Wall clock time and date at job start Tue Mar 31 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46685 * 2 1 4 4 N 1.46890 * 109.47494 * 120.00114 * 2 1 3 5 5 C 1.48628 * 111.00342 * 181.22155 * 4 2 1 6 6 C 1.55163 * 103.35946 * 200.85493 * 5 4 2 7 7 C 1.53608 * 102.66238 * 36.58430 * 6 5 4 8 8 C 1.53631 * 110.83288 * 99.45856 * 7 6 5 9 9 C 1.54704 * 101.54369 * 144.61411 * 8 7 6 10 10 N 1.46944 * 105.48771 * 335.51222 * 9 8 7 11 11 C 1.46501 * 124.35327 * 196.79603 * 10 9 8 12 12 C 1.53005 * 109.46802 * 269.94840 * 11 10 9 13 13 C 1.50697 * 109.47275 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99597 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00049 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00216 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99627 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47145 * 60.00259 * 17 15 13 19 19 H 1.48503 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47415 * 299.99881 * 17 15 13 21 21 C 1.34747 * 111.27592 * 16.77026 * 10 9 8 22 22 O 1.21274 * 125.13651 * 179.03071 * 21 10 9 23 23 C 1.48193 * 110.99862 * 63.76971 * 4 2 1 24 24 H 1.09000 * 109.47262 * 299.99589 * 1 2 3 25 25 H 1.08998 * 109.47543 * 59.99542 * 1 2 3 26 26 H 1.08998 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46576 * 240.00711 * 2 1 3 28 28 H 1.09004 * 109.47094 * 185.77500 * 3 2 1 29 29 H 1.09001 * 109.47708 * 305.77380 * 3 2 1 30 30 H 1.08998 * 109.47082 * 65.78024 * 3 2 1 31 31 H 1.09003 * 110.64027 * 319.32251 * 5 4 2 32 32 H 1.08999 * 110.64111 * 82.21914 * 5 4 2 33 33 H 1.09010 * 110.76960 * 278.29469 * 6 5 4 34 34 H 1.08991 * 110.77173 * 154.88188 * 6 5 4 35 35 H 1.09003 * 111.01200 * 262.68811 * 8 7 6 36 36 H 1.08998 * 111.01686 * 26.53288 * 8 7 6 37 37 H 1.08996 * 110.24096 * 94.50004 * 9 8 7 38 38 H 1.09003 * 110.23513 * 216.47253 * 9 8 7 39 39 H 1.08999 * 109.47183 * 29.94607 * 11 10 9 40 40 H 1.09000 * 109.47220 * 149.95192 * 11 10 9 41 41 H 1.09000 * 109.47188 * 300.00381 * 12 11 10 42 42 H 1.09000 * 109.46946 * 60.00184 * 12 11 10 43 43 H 0.96996 * 120.00105 * 180.02562 * 16 15 13 44 44 H 1.08999 * 110.01908 * 26.34736 * 23 4 2 45 45 H 1.08996 * 110.05643 * 264.96738 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.5052 -0.6867 1.2485 6 6 3.8368 -1.8632 2.2043 7 6 2.7588 -2.8987 1.8503 8 6 3.3207 -3.9706 0.9040 9 6 2.5730 -5.2350 1.3897 10 7 2.2079 -4.9625 2.7867 11 6 1.8044 -5.9890 3.7509 12 6 0.2866 -6.1736 3.6940 13 6 -0.1286 -7.2291 4.6863 14 1 0.6156 -7.7189 5.2968 15 6 -1.4587 -7.5687 4.8155 16 7 -2.3649 -6.9719 4.0725 17 14 -1.9732 -8.8775 6.0451 18 1 -1.5762 -8.4556 7.4124 19 1 -3.4463 -9.0566 5.9899 20 1 -1.3061 -10.1612 5.7099 21 6 2.2926 -3.6472 3.0666 22 8 2.0317 -3.1435 4.1385 23 6 1.6203 -2.1195 1.1889 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 3.1250 1.4443 -0.1034 29 1 1.5946 1.9854 -0.8338 30 1 1.7635 1.9256 0.9372 31 1 3.9231 -0.8667 0.2580 32 1 3.8726 0.2561 1.6537 33 1 3.7473 -1.5525 3.2453 34 1 4.8326 -2.2570 2.0015 35 1 3.0737 -3.7446 -0.1333 36 1 4.3976 -4.0797 1.0324 37 1 1.6770 -5.3966 0.7905 38 1 3.2273 -6.1050 1.3330 39 1 2.2945 -6.9311 3.5051 40 1 2.0953 -5.6791 4.7547 41 1 -0.2035 -5.2315 3.9397 42 1 -0.0043 -6.4836 2.6903 43 1 -3.3006 -7.2105 4.1637 44 1 1.4814 -2.4606 0.1630 45 1 0.6983 -2.2537 1.7546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273916242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:59 Heat of formation + Delta-G solvation = -37.606706 kcal Electronic energy + Delta-G solvation = -22924.803354 eV Core-core repulsion = 19748.649968 eV Total energy + Delta-G solvation = -3176.153386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94166 -38.39152 -35.97034 -34.87427 -33.26597 -31.58935 -29.49266 -29.14282 -27.99751 -26.92205 -25.00180 -23.62450 -22.26178 -21.80078 -20.22000 -20.03654 -18.56120 -16.67837 -16.45266 -15.80889 -15.48429 -15.37021 -14.78591 -14.55780 -14.28661 -13.86843 -13.59257 -13.11826 -12.96955 -12.80680 -12.62208 -12.39974 -12.36154 -12.20393 -12.14664 -11.84244 -11.56709 -11.30516 -11.27475 -11.09339 -10.92883 -10.91313 -10.84896 -10.68685 -10.61115 -9.97348 -9.83650 -9.32576 -9.05915 -8.45062 -8.35615 -7.98644 -6.00754 -4.04383 3.03257 3.33960 3.38129 3.40230 3.56329 3.81783 4.34493 4.40761 4.46722 4.52359 4.81781 4.83614 4.91779 5.11673 5.14100 5.18951 5.33604 5.35318 5.43166 5.44362 5.53779 5.62647 5.68274 5.69016 5.74037 5.77232 5.77980 5.83521 5.96505 6.05164 6.05788 6.10406 6.16052 6.21659 6.47773 6.78859 6.82943 7.01606 7.04862 7.53248 7.68378 7.87351 7.99099 8.35338 8.72787 9.02189 9.59567 11.10645 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.003937 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.610522 B = 7110.023558 C = 7677.812722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 C -0.144 4.144 4 N -0.509 5.509 5 C 0.040 3.960 6 C -0.103 4.103 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.102 3.898 10 N -0.613 5.613 11 C 0.128 3.872 12 C 0.012 3.988 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.528 3.472 22 O -0.522 6.522 23 C 0.065 3.935 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.054 0.946 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.684 11.939 -12.667 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 C -0.202 4.202 4 N -0.234 5.234 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.160 4.160 9 C -0.021 4.021 10 N -0.346 5.346 11 C 0.008 3.992 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.314 3.686 22 O -0.398 6.398 23 C -0.063 4.063 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.085 12.410 -11.634 20.867 hybrid contribution -0.184 -1.302 -0.195 1.330 sum 11.901 11.108 -11.830 20.124 Atomic orbital electron populations 1.21855 0.94051 1.02409 1.02138 1.21812 0.96177 0.95236 0.90822 1.21851 1.00624 0.95282 1.02433 1.64950 1.08904 1.12060 1.37466 1.23241 0.88367 0.99173 0.98034 1.22415 0.96578 0.93722 1.01444 1.21534 0.97460 0.96249 0.95888 1.22751 1.00425 0.93866 0.99008 1.22068 0.99282 0.97668 0.83125 1.48655 1.66519 1.07812 1.11634 1.21800 0.99219 0.87790 0.90353 1.19401 0.88419 0.97448 0.97321 1.21054 0.92673 1.21107 1.21381 0.92546 1.24995 0.96656 0.96559 0.96004 1.69961 1.01326 1.42142 1.39715 0.86613 0.77374 0.81936 0.81814 1.20125 1.21251 1.20214 1.20083 0.77477 0.82614 0.88461 1.90700 1.50412 1.71980 1.26665 1.22608 0.97692 0.86875 0.99094 0.91571 0.92380 0.92443 0.94243 0.92871 0.92305 0.91572 0.93825 0.89877 0.89419 0.90578 0.89711 0.89936 0.91137 0.90577 0.91695 0.91176 0.96073 0.96520 0.92884 0.92774 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.16 37.16 0.34 -1.19 16 2 C 0.07 0.70 2.37 -67.72 -0.16 0.54 16 3 C -0.14 -1.23 8.87 37.16 0.33 -0.91 16 4 N -0.51 -6.32 5.12 -222.66 -1.14 -7.46 16 5 C 0.04 0.41 5.40 -1.72 -0.01 0.40 16 6 C -0.10 -1.24 6.20 -25.27 -0.16 -1.40 16 7 C -0.11 -1.48 0.77 -155.24 -0.12 -1.60 16 8 C -0.12 -1.31 6.24 -25.51 -0.16 -1.47 16 9 C 0.10 1.38 7.37 -2.90 -0.02 1.36 16 10 N -0.61 -11.33 2.95 -172.48 -0.51 -11.83 16 11 C 0.13 2.77 5.88 -4.04 -0.02 2.74 16 12 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 17 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.53 10.08 6.64 -11.22 -0.07 10.01 16 22 O -0.52 -12.27 17.09 5.56 0.10 -12.18 16 23 C 0.07 0.89 4.87 -3.11 -0.02 0.88 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.65 7.28 -51.93 -0.38 0.27 16 27 H 0.04 0.38 7.98 -51.93 -0.41 -0.03 16 28 H 0.05 0.41 7.23 -51.93 -0.38 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 32 H 0.08 0.81 7.80 -51.93 -0.41 0.40 16 33 H 0.09 1.27 7.53 -51.92 -0.39 0.88 16 34 H 0.08 0.74 7.44 -51.93 -0.39 0.36 16 35 H 0.08 0.74 7.41 -51.93 -0.38 0.35 16 36 H 0.08 0.75 7.50 -51.93 -0.39 0.36 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.60 7.95 -51.93 -0.41 1.18 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.05 0.64 6.80 -51.93 -0.35 0.29 16 45 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.59 352.94 -9.20 -42.79 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.05 Total: -2.82 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.63 Total: -4.16 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.91 Total: -45.84 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.10 Total: -12.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.59 -9.20 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273916242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.182 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds