Wall clock time and date at job start Tue Mar 31 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46685 * 2 1 4 4 N 1.46890 * 109.47494 * 120.00114 * 2 1 3 5 5 C 1.48628 * 111.00342 * 181.22155 * 4 2 1 6 6 C 1.55163 * 103.35946 * 200.85493 * 5 4 2 7 7 C 1.53608 * 102.66238 * 36.58430 * 6 5 4 8 8 C 1.53631 * 110.83288 * 99.45856 * 7 6 5 9 9 C 1.54704 * 101.54369 * 144.61411 * 8 7 6 10 10 N 1.46944 * 105.48771 * 335.51222 * 9 8 7 11 11 C 1.46501 * 124.35327 * 196.79603 * 10 9 8 12 12 C 1.53005 * 109.46802 * 269.94840 * 11 10 9 13 13 C 1.50697 * 109.47275 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99597 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00049 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00216 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99627 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47145 * 60.00259 * 17 15 13 19 19 H 1.48503 * 109.46793 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47415 * 299.99881 * 17 15 13 21 21 C 1.34747 * 111.27592 * 16.77026 * 10 9 8 22 22 O 1.21274 * 125.13651 * 179.03071 * 21 10 9 23 23 C 1.48193 * 110.99862 * 63.76971 * 4 2 1 24 24 H 1.09000 * 109.47262 * 299.99589 * 1 2 3 25 25 H 1.08998 * 109.47543 * 59.99542 * 1 2 3 26 26 H 1.08998 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46576 * 240.00711 * 2 1 3 28 28 H 1.09004 * 109.47094 * 185.77500 * 3 2 1 29 29 H 1.09001 * 109.47708 * 305.77380 * 3 2 1 30 30 H 1.08998 * 109.47082 * 65.78024 * 3 2 1 31 31 H 1.09003 * 110.64027 * 319.32251 * 5 4 2 32 32 H 1.08999 * 110.64111 * 82.21914 * 5 4 2 33 33 H 1.09010 * 110.76960 * 278.29469 * 6 5 4 34 34 H 1.08991 * 110.77173 * 154.88188 * 6 5 4 35 35 H 1.09003 * 111.01200 * 262.68811 * 8 7 6 36 36 H 1.08998 * 111.01686 * 26.53288 * 8 7 6 37 37 H 1.08996 * 110.24096 * 94.50004 * 9 8 7 38 38 H 1.09003 * 110.23513 * 216.47253 * 9 8 7 39 39 H 1.08999 * 109.47183 * 29.94607 * 11 10 9 40 40 H 1.09000 * 109.47220 * 149.95192 * 11 10 9 41 41 H 1.09000 * 109.47188 * 300.00381 * 12 11 10 42 42 H 1.09000 * 109.46946 * 60.00184 * 12 11 10 43 43 H 0.96996 * 120.00105 * 180.02562 * 16 15 13 44 44 H 1.08999 * 110.01908 * 26.34736 * 23 4 2 45 45 H 1.08996 * 110.05643 * 264.96738 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.5052 -0.6867 1.2485 6 6 3.8368 -1.8632 2.2043 7 6 2.7588 -2.8987 1.8503 8 6 3.3207 -3.9706 0.9040 9 6 2.5730 -5.2350 1.3897 10 7 2.2079 -4.9625 2.7867 11 6 1.8044 -5.9890 3.7509 12 6 0.2866 -6.1736 3.6940 13 6 -0.1286 -7.2291 4.6863 14 1 0.6156 -7.7189 5.2968 15 6 -1.4587 -7.5687 4.8155 16 7 -2.3649 -6.9719 4.0725 17 14 -1.9732 -8.8775 6.0451 18 1 -1.5762 -8.4556 7.4124 19 1 -3.4463 -9.0566 5.9899 20 1 -1.3061 -10.1612 5.7099 21 6 2.2926 -3.6472 3.0666 22 8 2.0317 -3.1435 4.1385 23 6 1.6203 -2.1195 1.1889 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 3.1250 1.4443 -0.1034 29 1 1.5946 1.9854 -0.8338 30 1 1.7635 1.9256 0.9372 31 1 3.9231 -0.8667 0.2580 32 1 3.8726 0.2561 1.6537 33 1 3.7473 -1.5525 3.2453 34 1 4.8326 -2.2570 2.0015 35 1 3.0737 -3.7446 -0.1333 36 1 4.3976 -4.0797 1.0324 37 1 1.6770 -5.3966 0.7905 38 1 3.2273 -6.1050 1.3330 39 1 2.2945 -6.9311 3.5051 40 1 2.0953 -5.6791 4.7547 41 1 -0.2035 -5.2315 3.9397 42 1 -0.0043 -6.4836 2.6903 43 1 -3.3006 -7.2105 4.1637 44 1 1.4814 -2.4606 0.1630 45 1 0.6983 -2.2537 1.7546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273916242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:59 Heat of formation + Delta-G solvation = -60.768260 kcal Electronic energy + Delta-G solvation = -22925.807715 eV Core-core repulsion = 19748.649968 eV Total energy + Delta-G solvation = -3177.157746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15939 -39.52195 -37.49073 -36.21651 -35.06368 -33.12580 -30.75934 -30.38259 -29.15060 -27.78713 -26.91305 -24.75815 -23.61472 -23.16819 -21.51432 -20.97287 -19.93680 -18.69954 -17.62607 -17.12870 -16.93448 -16.54881 -16.36525 -15.82244 -15.47061 -15.23314 -14.72942 -14.53622 -14.35372 -14.09219 -13.94638 -13.82053 -13.56806 -13.21947 -13.06292 -12.98134 -12.90965 -12.84106 -12.56592 -12.53853 -12.16756 -12.02105 -11.97440 -11.91186 -11.72678 -11.67479 -11.56274 -11.43751 -10.67615 -10.60289 -9.58335 -9.32350 -8.25524 -6.39147 1.37452 1.42193 1.49605 1.55897 2.12460 2.40165 2.93617 3.07762 3.19431 3.43892 3.54037 3.90154 4.03069 4.07219 4.13930 4.26548 4.27567 4.35801 4.41501 4.44798 4.58525 4.61416 4.69271 4.74403 4.80580 4.84089 4.86371 4.93265 4.95172 4.98650 5.00910 5.03210 5.12922 5.16008 5.29627 5.33342 5.40016 5.43483 5.57978 5.79747 5.91519 6.12927 6.19038 6.28477 6.76111 7.21768 7.31075 8.86608 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.003937 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.610522 B = 7110.023558 C = 7677.812722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.139 4.139 4 N -0.535 5.535 5 C 0.047 3.953 6 C -0.101 4.101 7 C -0.102 4.102 8 C -0.103 4.103 9 C 0.091 3.909 10 N -0.620 5.620 11 C 0.142 3.858 12 C 0.024 3.976 13 C -0.548 4.548 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.258 1.258 21 C 0.511 3.489 22 O -0.583 6.583 23 C 0.071 3.929 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.050 0.950 41 H -0.032 1.032 42 H 0.000 1.000 43 H 0.265 0.735 44 H 0.077 0.923 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 11.349 -14.834 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 C -0.197 4.197 4 N -0.260 5.260 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.106 4.106 8 C -0.140 4.140 9 C -0.030 4.030 10 N -0.352 5.352 11 C 0.020 3.980 12 C -0.014 4.014 13 C -0.586 4.586 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.796 3.204 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.182 1.182 21 C 0.299 3.701 22 O -0.463 6.463 23 C -0.057 4.057 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.069 0.931 41 H -0.013 1.013 42 H 0.018 0.982 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.508 11.814 -13.849 23.278 hybrid contribution -0.995 -1.072 0.482 1.540 sum 13.513 10.742 -13.368 21.833 Atomic orbital electron populations 1.21871 0.94968 1.01380 1.02273 1.21901 0.95515 0.96194 0.90468 1.21819 1.01545 0.93986 1.02322 1.64876 1.10662 1.11148 1.39350 1.23275 0.86888 0.98782 0.99048 1.22445 0.97511 0.93968 1.00010 1.21553 0.98086 0.97059 0.93906 1.22824 1.01534 0.90088 0.99558 1.22449 1.00131 1.00556 0.79894 1.48791 1.65816 1.07203 1.13380 1.21369 0.95721 0.90038 0.90855 1.19205 0.91797 0.94437 0.95938 1.21530 0.93488 1.21602 1.21977 0.91415 1.26050 0.96637 0.99050 0.98065 1.70115 1.01788 1.43854 1.41541 0.85400 0.77107 0.79129 0.78804 1.19523 1.20756 1.18221 1.21175 0.76378 0.83156 0.89346 1.90644 1.52927 1.73170 1.29602 1.22450 0.95693 0.88279 0.99319 0.93446 0.90211 0.94065 0.92500 0.91504 0.90698 0.93090 0.90750 0.89098 0.92884 0.87293 0.86399 0.86912 0.91651 0.87814 0.88793 0.93116 1.01322 0.98153 0.92670 0.90466 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.16 71.98 0.66 -2.38 16 2 C 0.07 1.24 2.37 44.92 0.11 1.35 16 3 C -0.14 -2.05 8.87 71.98 0.64 -1.41 16 4 N -0.53 -12.85 5.12 -858.37 -4.39 -17.24 16 5 C 0.05 0.85 5.40 86.71 0.47 1.32 16 6 C -0.10 -2.26 6.20 31.54 0.20 -2.06 16 7 C -0.10 -2.72 0.77 -52.66 -0.04 -2.76 16 8 C -0.10 -1.80 6.24 31.39 0.20 -1.60 16 9 C 0.09 2.29 7.37 86.88 0.64 2.93 16 10 N -0.62 -23.34 2.95 -818.00 -2.41 -25.75 16 11 C 0.14 6.32 5.88 86.38 0.51 6.83 16 12 C 0.02 1.37 5.30 29.85 0.16 1.52 16 13 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 14 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -58.96 13.29 21.45 0.28 -58.67 16 17 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 C 0.51 20.41 6.64 87.52 0.58 20.99 16 22 O -0.58 -29.72 17.09 -3.01 -0.05 -29.78 16 23 C 0.07 1.95 4.87 86.05 0.42 2.36 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 0.96 7.28 -2.39 -0.02 0.94 16 27 H 0.06 0.89 7.98 -2.39 -0.02 0.87 16 28 H 0.07 0.81 7.23 -2.38 -0.02 0.79 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 32 H 0.09 1.52 7.80 -2.39 -0.02 1.51 16 33 H 0.05 1.57 7.53 -2.38 -0.02 1.55 16 34 H 0.11 1.69 7.44 -2.39 -0.02 1.68 16 35 H 0.12 1.39 7.41 -2.39 -0.02 1.37 16 36 H 0.11 1.39 7.50 -2.39 -0.02 1.37 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.05 2.43 7.95 -2.39 -0.02 2.41 16 41 H -0.03 -2.09 8.14 -2.39 -0.02 -2.11 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.08 1.70 6.80 -2.39 -0.02 1.69 16 45 H 0.04 1.32 7.74 -2.39 -0.02 1.31 16 Total: -1.00 -80.16 352.94 1.62 -78.55 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.94 Total: 10.09 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.23 Total: -4.51 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -6.52 Total: -101.67 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -80.16 1.62 -78.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273916242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.779 kcal (2) G-P(sol) polarization free energy of solvation -80.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds