Wall clock time and date at job start Tue Mar 31 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46885 * 2 1 4 4 H 1.08995 * 109.47158 * 305.43866 * 3 2 1 5 5 C 1.53000 * 109.46798 * 185.44206 * 3 2 1 6 6 N 1.46503 * 109.47164 * 65.44377 * 3 2 1 7 7 C 1.46855 * 124.36457 * 247.02764 * 6 3 2 8 8 C 1.54647 * 105.50030 * 196.87024 * 7 6 3 9 9 C 1.53867 * 101.58511 * 335.24325 * 8 7 6 10 10 C 1.53243 * 110.58582 * 144.20513 * 9 8 7 11 11 C 1.54797 * 104.81279 * 122.08393 * 10 9 8 12 12 C 1.55001 * 102.93611 * 21.93241 * 11 10 9 13 13 N 1.47078 * 110.69300 * 263.77769 * 9 8 7 14 14 C 1.46899 * 111.00114 * 93.80307 * 13 9 8 15 15 C 1.50696 * 109.47269 * 74.27998 * 14 13 9 16 16 H 1.07997 * 119.99963 * 356.97101 * 15 14 13 17 17 C 1.37881 * 120.00105 * 176.97107 * 15 14 13 18 18 N 1.31512 * 120.00085 * 159.41869 * 17 15 14 19 19 Si 1.86798 * 119.99955 * 339.41504 * 17 15 14 20 20 H 1.48499 * 109.47237 * 94.10162 * 19 17 15 21 21 H 1.48496 * 109.47406 * 214.10483 * 19 17 15 22 22 H 1.48507 * 109.47280 * 334.10083 * 19 17 15 23 23 C 1.34661 * 124.36742 * 66.72638 * 6 3 2 24 24 O 1.21279 * 125.08332 * 359.11457 * 23 6 3 25 25 H 1.08995 * 109.47230 * 183.26864 * 1 2 3 26 26 H 1.08994 * 109.47303 * 303.27437 * 1 2 3 27 27 H 1.09004 * 109.46772 * 63.27023 * 1 2 3 28 28 H 1.09002 * 109.47215 * 240.00426 * 2 1 3 29 29 H 1.08992 * 109.47111 * 120.00118 * 2 1 3 30 30 H 1.09003 * 109.47252 * 299.99733 * 5 3 2 31 31 H 1.09005 * 109.47129 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47864 * 60.00250 * 5 3 2 33 33 H 1.08998 * 110.23726 * 315.87834 * 7 6 3 34 34 H 1.09003 * 110.23845 * 77.86500 * 7 6 3 35 35 H 1.09002 * 111.00516 * 93.32053 * 8 7 6 36 36 H 1.09001 * 111.00367 * 217.17344 * 8 7 6 37 37 H 1.09004 * 110.36817 * 240.91824 * 10 9 8 38 38 H 1.08994 * 110.37348 * 3.24927 * 10 9 8 39 39 H 1.08996 * 110.72194 * 263.56620 * 11 10 9 40 40 H 1.09001 * 110.72270 * 140.29154 * 11 10 9 41 41 H 1.09000 * 110.63973 * 204.57235 * 12 11 10 42 42 H 1.09000 * 110.78652 * 81.57624 * 12 11 10 43 43 H 1.08998 * 109.46999 * 194.28218 * 14 13 9 44 44 H 1.09006 * 109.46794 * 314.28131 * 14 13 9 45 45 H 0.97000 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5993 1.9837 -0.8372 5 6 3.5638 1.4447 -0.1368 6 7 1.6615 2.0943 1.2563 7 6 0.7008 3.2001 1.3599 8 6 0.9440 3.8300 2.7512 9 6 1.5566 2.6480 3.5226 10 6 2.6298 3.1404 4.4994 11 6 2.1546 2.6512 5.8890 12 6 1.2051 1.4775 5.5377 13 7 0.5253 1.9442 4.2999 14 6 -0.0240 0.8120 3.5421 15 6 0.9804 -0.3112 3.5185 16 1 1.9504 -0.1779 3.9743 17 6 0.6611 -1.5091 2.9149 18 7 1.6166 -2.3266 2.5297 19 14 -1.1286 -1.9707 2.6443 20 1 -1.5458 -1.5570 1.2805 21 1 -1.2876 -3.4403 2.7861 22 1 -1.9752 -1.2818 3.6513 23 6 2.1454 1.7528 2.4657 24 8 2.9389 0.8591 2.6720 25 1 -0.3633 -1.0259 0.0586 26 1 -0.3633 0.5638 0.8591 27 1 -0.3633 0.4623 -0.9179 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0046 0.9035 0.7005 31 1 3.9272 2.4724 -0.1364 32 1 3.8455 0.9598 -1.0715 33 1 0.8853 3.9346 0.5759 34 1 -0.3190 2.8214 1.2904 35 1 1.6467 4.6607 2.6865 36 1 0.0056 4.1485 3.2053 37 1 3.5969 2.7020 4.2531 38 1 2.6897 4.2285 4.4804 39 1 1.6148 3.4407 6.4120 40 1 2.9980 2.3001 6.4836 41 1 0.4810 1.3168 6.3364 42 1 1.7713 0.5663 5.3449 43 1 -0.9425 0.4680 4.0175 44 1 -0.2394 1.1283 2.5215 45 1 1.3919 -3.1691 2.1047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:39 Heat of formation + Delta-G solvation = 2.486207 kcal Electronic energy + Delta-G solvation = -25600.586671 eV Core-core repulsion = 22426.171845 eV Total energy + Delta-G solvation = -3174.414827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73413 -37.22845 -35.47642 -34.23788 -32.86016 -31.15858 -30.11864 -28.74147 -27.10781 -26.51888 -23.67812 -23.14081 -21.91021 -21.30171 -20.32392 -19.59069 -17.51014 -16.97169 -16.21214 -15.42047 -15.00675 -14.52193 -14.20427 -13.97213 -13.60535 -13.34723 -13.12442 -12.77917 -12.70062 -12.36647 -12.18496 -12.07573 -11.83543 -11.64403 -11.45123 -11.21252 -11.06154 -10.95651 -10.73547 -10.54440 -10.43480 -10.31063 -10.21435 -10.12647 -10.03965 -9.83721 -9.65833 -9.32735 -8.52985 -8.05602 -7.64499 -7.21947 -5.93890 -3.82707 3.30047 3.41454 3.46981 3.73589 3.83827 4.52299 4.81812 4.98352 5.09358 5.27935 5.34046 5.41441 5.54661 5.57828 5.70299 5.74166 5.76804 5.84666 5.91564 6.05209 6.14628 6.18064 6.21088 6.26914 6.28339 6.38544 6.39876 6.47514 6.53987 6.55876 6.64140 6.78143 6.80011 6.89482 7.00813 7.06654 7.22363 7.43849 7.63819 7.72785 7.89952 8.03596 8.12796 8.57463 9.22078 9.44057 9.69600 11.15288 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.011611 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.735867 B = 2411.023648 C = 3312.717584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.153 4.153 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.164 4.164 6 N -0.621 5.621 7 C 0.108 3.892 8 C -0.117 4.117 9 C 0.066 3.934 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.028 3.972 13 N -0.488 5.488 14 C 0.126 3.874 15 C -0.550 4.550 16 H 0.109 0.891 17 C 0.095 3.905 18 N -0.870 5.870 19 Si 0.829 3.171 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.526 3.474 24 O -0.471 6.471 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.034 0.966 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 12.027 -2.477 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.066 3.934 4 H 0.084 0.916 5 C -0.222 4.222 6 N -0.359 5.359 7 C -0.016 4.016 8 C -0.156 4.156 9 C -0.028 4.028 10 C -0.147 4.147 11 C -0.160 4.160 12 C -0.099 4.099 13 N -0.212 5.212 14 C 0.000 4.000 15 C -0.587 4.587 16 H 0.126 0.874 17 C -0.108 4.108 18 N -0.507 5.507 19 Si 0.657 3.343 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.196 1.196 23 C 0.311 3.689 24 O -0.340 6.340 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.250 11.643 -2.403 11.891 hybrid contribution -0.769 -1.084 -0.622 1.467 sum -1.020 10.559 -3.025 11.031 Atomic orbital electron populations 1.21935 0.96712 1.01556 0.99889 1.22169 0.95817 0.95954 1.05127 1.20753 0.94374 0.93818 0.84500 0.91635 1.22138 0.96006 1.01205 1.02841 1.48220 1.44797 1.35974 1.06882 1.21969 0.93324 0.88821 0.97513 1.22586 1.02270 0.96394 0.94302 1.21923 0.92702 0.94576 0.93646 1.22243 0.98021 0.99857 0.94603 1.22504 0.98879 0.98466 0.96116 1.23438 0.96257 0.98054 0.92153 1.65147 1.26187 1.25391 1.04478 1.20580 0.96461 0.89183 0.93816 1.22011 1.02004 0.97020 1.37691 0.87416 1.24697 0.95050 0.96806 0.94279 1.70089 1.31337 1.10969 1.38287 0.87684 0.89504 0.77725 0.79407 1.18942 1.21963 1.19576 1.20330 0.81618 0.83719 0.83251 1.90703 1.33281 1.28049 1.81953 0.92940 0.92049 0.95240 0.93378 0.85233 0.90149 0.93576 0.92576 0.91928 0.92171 0.90821 0.89116 0.91127 0.91591 0.91899 0.91848 0.91553 0.89586 0.95474 0.94850 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.35 37.16 0.31 -2.60 16 2 C -0.15 -3.14 5.43 -26.73 -0.15 -3.29 16 3 C 0.17 2.99 2.87 -67.93 -0.19 2.80 16 4 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 5 C -0.16 -2.79 9.10 37.16 0.34 -2.45 16 6 N -0.62 -11.41 1.87 -164.92 -0.31 -11.72 16 7 C 0.11 1.62 6.51 -2.98 -0.02 1.61 16 8 C -0.12 -1.71 6.34 -25.41 -0.16 -1.87 16 9 C 0.07 1.20 0.79 -132.17 -0.10 1.10 16 10 C -0.11 -1.79 6.19 -25.66 -0.16 -1.95 16 11 C -0.12 -1.94 7.08 -24.73 -0.17 -2.12 16 12 C 0.03 0.56 6.27 -1.76 -0.01 0.55 16 13 N -0.49 -9.89 5.17 -218.19 -1.13 -11.02 16 14 C 0.13 2.95 4.32 -4.98 -0.02 2.93 16 15 C -0.55 -14.52 5.37 -34.44 -0.18 -14.70 16 16 H 0.11 3.18 4.00 -52.49 -0.21 2.97 16 17 C 0.09 2.60 4.19 -17.82 -0.07 2.52 16 18 N -0.87 -25.34 13.10 55.43 0.73 -24.61 16 19 Si 0.83 20.61 25.81 -169.99 -4.39 16.22 16 20 H -0.26 -6.23 5.14 56.52 0.29 -5.94 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.27 -6.73 6.47 56.52 0.37 -6.36 16 23 C 0.53 11.05 3.52 -11.13 -0.04 11.01 16 24 O -0.47 -11.87 11.31 5.56 0.06 -11.80 16 25 H 0.05 1.14 5.62 -51.93 -0.29 0.85 16 26 H 0.06 1.31 4.57 -51.93 -0.24 1.08 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.13 3.27 4.76 -51.93 -0.25 3.02 16 30 H 0.08 1.65 6.40 -51.93 -0.33 1.32 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.95 7.04 -51.93 -0.37 0.58 16 35 H 0.07 0.91 7.57 -51.93 -0.39 0.52 16 36 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 37 H 0.07 1.27 7.46 -51.93 -0.39 0.88 16 38 H 0.07 0.90 7.40 -51.93 -0.38 0.51 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.01 5.12 -51.93 -0.27 1.75 16 43 H 0.03 0.68 6.50 -51.93 -0.34 0.34 16 44 H 0.03 0.78 3.17 -51.93 -0.16 0.62 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -29.86 311.47 -8.10 -37.96 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.12 Total: 6.74 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.64 Total: -6.47 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.71 Total: -47.35 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.80 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.39 Total: 16.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.86 -8.10 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.443 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds