Wall clock time and date at job start Tue Mar 31 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46885 * 2 1 4 4 H 1.08995 * 109.47158 * 305.43866 * 3 2 1 5 5 C 1.53000 * 109.46798 * 185.44206 * 3 2 1 6 6 N 1.46503 * 109.47164 * 65.44377 * 3 2 1 7 7 C 1.46855 * 124.36457 * 247.02764 * 6 3 2 8 8 C 1.54647 * 105.50030 * 196.87024 * 7 6 3 9 9 C 1.53867 * 101.58511 * 335.24325 * 8 7 6 10 10 C 1.53243 * 110.58582 * 144.20513 * 9 8 7 11 11 C 1.54797 * 104.81279 * 122.08393 * 10 9 8 12 12 C 1.55001 * 102.93611 * 21.93241 * 11 10 9 13 13 N 1.47078 * 110.69300 * 263.77769 * 9 8 7 14 14 C 1.46899 * 111.00114 * 93.80307 * 13 9 8 15 15 C 1.50696 * 109.47269 * 74.27998 * 14 13 9 16 16 H 1.07997 * 119.99963 * 356.97101 * 15 14 13 17 17 C 1.37881 * 120.00105 * 176.97107 * 15 14 13 18 18 N 1.31512 * 120.00085 * 159.41869 * 17 15 14 19 19 Si 1.86798 * 119.99955 * 339.41504 * 17 15 14 20 20 H 1.48499 * 109.47237 * 94.10162 * 19 17 15 21 21 H 1.48496 * 109.47406 * 214.10483 * 19 17 15 22 22 H 1.48507 * 109.47280 * 334.10083 * 19 17 15 23 23 C 1.34661 * 124.36742 * 66.72638 * 6 3 2 24 24 O 1.21279 * 125.08332 * 359.11457 * 23 6 3 25 25 H 1.08995 * 109.47230 * 183.26864 * 1 2 3 26 26 H 1.08994 * 109.47303 * 303.27437 * 1 2 3 27 27 H 1.09004 * 109.46772 * 63.27023 * 1 2 3 28 28 H 1.09002 * 109.47215 * 240.00426 * 2 1 3 29 29 H 1.08992 * 109.47111 * 120.00118 * 2 1 3 30 30 H 1.09003 * 109.47252 * 299.99733 * 5 3 2 31 31 H 1.09005 * 109.47129 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47864 * 60.00250 * 5 3 2 33 33 H 1.08998 * 110.23726 * 315.87834 * 7 6 3 34 34 H 1.09003 * 110.23845 * 77.86500 * 7 6 3 35 35 H 1.09002 * 111.00516 * 93.32053 * 8 7 6 36 36 H 1.09001 * 111.00367 * 217.17344 * 8 7 6 37 37 H 1.09004 * 110.36817 * 240.91824 * 10 9 8 38 38 H 1.08994 * 110.37348 * 3.24927 * 10 9 8 39 39 H 1.08996 * 110.72194 * 263.56620 * 11 10 9 40 40 H 1.09001 * 110.72270 * 140.29154 * 11 10 9 41 41 H 1.09000 * 110.63973 * 204.57235 * 12 11 10 42 42 H 1.09000 * 110.78652 * 81.57624 * 12 11 10 43 43 H 1.08998 * 109.46999 * 194.28218 * 14 13 9 44 44 H 1.09006 * 109.46794 * 314.28131 * 14 13 9 45 45 H 0.97000 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5993 1.9837 -0.8372 5 6 3.5638 1.4447 -0.1368 6 7 1.6615 2.0943 1.2563 7 6 0.7008 3.2001 1.3599 8 6 0.9440 3.8300 2.7512 9 6 1.5566 2.6480 3.5226 10 6 2.6298 3.1404 4.4994 11 6 2.1546 2.6512 5.8890 12 6 1.2051 1.4775 5.5377 13 7 0.5253 1.9442 4.2999 14 6 -0.0240 0.8120 3.5421 15 6 0.9804 -0.3112 3.5185 16 1 1.9504 -0.1779 3.9743 17 6 0.6611 -1.5091 2.9149 18 7 1.6166 -2.3266 2.5297 19 14 -1.1286 -1.9707 2.6443 20 1 -1.5458 -1.5570 1.2805 21 1 -1.2876 -3.4403 2.7861 22 1 -1.9752 -1.2818 3.6513 23 6 2.1454 1.7528 2.4657 24 8 2.9389 0.8591 2.6720 25 1 -0.3633 -1.0259 0.0586 26 1 -0.3633 0.5638 0.8591 27 1 -0.3633 0.4623 -0.9179 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0046 0.9035 0.7005 31 1 3.9272 2.4724 -0.1364 32 1 3.8455 0.9598 -1.0715 33 1 0.8853 3.9346 0.5759 34 1 -0.3190 2.8214 1.2904 35 1 1.6467 4.6607 2.6865 36 1 0.0056 4.1485 3.2053 37 1 3.5969 2.7020 4.2531 38 1 2.6897 4.2285 4.4804 39 1 1.6148 3.4407 6.4120 40 1 2.9980 2.3001 6.4836 41 1 0.4810 1.3168 6.3364 42 1 1.7713 0.5663 5.3449 43 1 -0.9425 0.4680 4.0175 44 1 -0.2394 1.1283 2.5215 45 1 1.3919 -3.1691 2.1047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:38 Heat of formation + Delta-G solvation = -18.325856 kcal Electronic energy + Delta-G solvation = -25601.489150 eV Core-core repulsion = 22426.171845 eV Total energy + Delta-G solvation = -3175.317305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21958 -38.71925 -37.08995 -35.80888 -34.64317 -32.94037 -31.62323 -30.14128 -28.45917 -28.38025 -25.18962 -24.69994 -23.55244 -22.68199 -21.88031 -21.10040 -19.07736 -18.92016 -17.69413 -16.90288 -16.59021 -16.29121 -15.72008 -15.51619 -15.12936 -14.95668 -14.70632 -14.42134 -14.15326 -14.00012 -13.82935 -13.52823 -13.41633 -13.13076 -12.96666 -12.82155 -12.62490 -12.48375 -12.31158 -12.12046 -11.97776 -11.89677 -11.80407 -11.75514 -11.57866 -11.35881 -11.27946 -11.16877 -10.45658 -9.88762 -9.15748 -8.94744 -8.06916 -5.96410 1.28398 1.36394 1.41517 2.19899 2.43370 2.44501 3.20236 3.35648 3.67245 3.80801 3.91424 4.08099 4.16920 4.25180 4.32160 4.39320 4.44123 4.52844 4.54825 4.69888 4.76920 4.79126 4.85072 4.87922 4.97302 4.99454 5.02963 5.05017 5.10539 5.15702 5.21005 5.22129 5.34379 5.35107 5.38012 5.46431 5.52815 5.68861 5.87019 6.17404 6.23106 6.26385 6.48767 6.67054 7.10862 7.56900 7.88552 9.05101 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.011611 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.735867 B = 2411.023648 C = 3312.717584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C 0.167 3.833 4 H 0.105 0.895 5 C -0.155 4.155 6 N -0.621 5.621 7 C 0.100 3.900 8 C -0.105 4.105 9 C 0.053 3.947 10 C -0.106 4.106 11 C -0.110 4.110 12 C 0.023 3.977 13 N -0.480 5.480 14 C 0.136 3.864 15 C -0.527 4.527 16 H 0.072 0.928 17 C 0.055 3.945 18 N -0.911 5.911 19 Si 0.874 3.126 20 H -0.243 1.243 21 H -0.305 1.305 22 H -0.268 1.268 23 C 0.515 3.485 24 O -0.526 6.526 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.014 0.986 44 H 0.041 0.959 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 15.886 -3.548 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.195 4.195 3 C 0.064 3.936 4 H 0.123 0.877 5 C -0.213 4.213 6 N -0.357 5.357 7 C -0.023 4.023 8 C -0.143 4.143 9 C -0.041 4.041 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.105 4.105 13 N -0.203 5.203 14 C 0.009 3.991 15 C -0.565 4.565 16 H 0.090 0.910 17 C -0.144 4.144 18 N -0.551 5.551 19 Si 0.701 3.299 20 H -0.167 1.167 21 H -0.232 1.232 22 H -0.193 1.193 23 C 0.301 3.699 24 O -0.400 6.400 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.774 15.554 -3.487 16.039 hybrid contribution -0.227 -2.283 -0.271 2.310 sum -2.001 13.271 -3.758 13.938 Atomic orbital electron populations 1.21825 0.96258 1.00101 1.01024 1.22102 0.96228 0.97865 1.03261 1.20845 0.94789 0.92416 0.85550 0.87687 1.22034 0.95560 1.01916 1.01787 1.48376 1.44650 1.36420 1.06303 1.22271 0.92161 0.88502 0.99338 1.22648 1.03416 0.95368 0.92888 1.22202 0.92969 0.95329 0.93596 1.22281 0.96147 1.02038 0.94014 1.22472 0.98362 0.97475 0.96437 1.23401 0.96729 0.97942 0.92410 1.65191 1.27132 1.23560 1.04453 1.20372 0.94994 0.89288 0.94471 1.22006 1.01062 0.97790 1.35637 0.91012 1.25174 0.97676 0.96990 0.94599 1.70238 1.33076 1.11387 1.40423 0.86961 0.85904 0.76605 0.80443 1.16704 1.23225 1.19264 1.20887 0.80967 0.83301 0.84744 1.90694 1.35748 1.30532 1.83005 0.95340 0.93440 0.91586 0.92634 0.89958 0.94642 0.91522 0.90827 0.87793 0.92645 0.87528 0.87756 0.93629 0.87548 0.88777 0.91299 0.90892 0.94346 0.96836 0.94101 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.35 71.98 0.60 -4.66 16 2 C -0.16 -6.39 5.43 30.60 0.17 -6.23 16 3 C 0.17 5.57 2.87 44.99 0.13 5.70 16 4 H 0.11 2.72 8.07 -2.39 -0.02 2.70 16 5 C -0.15 -5.11 9.10 71.98 0.65 -4.46 16 6 N -0.62 -21.55 1.87 -794.15 -1.49 -23.03 16 7 C 0.10 2.57 6.51 86.87 0.57 3.14 16 8 C -0.11 -2.57 6.34 31.45 0.20 -2.38 16 9 C 0.05 1.83 0.79 3.06 0.00 1.83 16 10 C -0.11 -3.27 6.19 31.29 0.19 -3.07 16 11 C -0.11 -3.30 7.08 31.89 0.23 -3.07 16 12 C 0.02 0.91 6.27 86.63 0.54 1.46 16 13 N -0.48 -18.95 5.17 -844.23 -4.36 -23.31 16 14 C 0.14 6.38 4.32 85.56 0.37 6.75 16 15 C -0.53 -28.99 5.37 25.60 0.14 -28.86 16 16 H 0.07 4.54 4.00 -2.91 -0.01 4.53 16 17 C 0.06 3.14 4.19 84.66 0.35 3.49 16 18 N -0.91 -56.26 13.10 21.45 0.28 -55.98 16 19 Si 0.87 43.49 25.81 68.60 1.77 45.26 16 20 H -0.24 -11.15 5.14 99.48 0.51 -10.64 16 21 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 22 H -0.27 -13.06 6.47 99.48 0.64 -12.42 16 23 C 0.51 21.56 3.52 87.61 0.31 21.87 16 24 O -0.53 -27.95 11.31 -3.03 -0.03 -27.98 16 25 H 0.03 1.21 5.62 -2.39 -0.01 1.19 16 26 H 0.05 1.95 4.57 -2.39 -0.01 1.94 16 27 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.08 4.30 4.76 -2.39 -0.01 4.29 16 30 H 0.03 1.49 6.40 -2.39 -0.02 1.48 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.51 7.04 -2.39 -0.02 1.49 16 35 H 0.11 1.96 7.57 -2.39 -0.02 1.94 16 36 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 37 H 0.04 1.62 7.46 -2.38 -0.02 1.61 16 38 H 0.11 2.39 7.40 -2.39 -0.02 2.37 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.70 16 42 H 0.04 1.91 5.12 -2.39 -0.01 1.90 16 43 H 0.01 0.68 6.50 -2.39 -0.02 0.66 16 44 H 0.04 1.87 3.17 -2.38 -0.01 1.87 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -71.55 311.47 1.35 -70.20 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.73 Total: 23.33 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.45 Total: -8.49 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.57 Total: -102.32 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.03 Total: -27.98 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.77 Total: 45.26 kcal Total: -71.55 1.35 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.879 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds