Wall clock time and date at job start Tue Mar 31 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09001 * 109.47468 * 54.72848 * 3 2 1 5 5 C 1.53003 * 109.46770 * 174.72498 * 3 2 1 6 6 N 1.46497 * 109.47102 * 294.72058 * 3 2 1 7 7 C 1.33364 * 117.33434 * 125.96685 * 6 3 2 8 8 O 1.21274 * 118.76846 * 359.91773 * 7 6 3 9 9 C 1.50327 * 122.46184 * 179.90147 * 7 6 3 10 10 C 1.52890 * 109.36271 * 338.48794 * 9 7 6 11 11 C 1.53114 * 109.30552 * 52.61309 * 10 9 7 12 12 H 1.09010 * 112.35199 * 60.45329 * 11 10 9 13 13 C 1.44677 * 117.34089 * 305.94540 * 6 3 2 14 14 H 1.09004 * 110.00797 * 47.02175 * 13 6 3 15 15 C 1.54158 * 110.97645 * 285.26726 * 13 6 3 16 16 C 1.54087 * 105.00272 * 217.94186 * 15 13 6 17 17 N 1.47911 * 107.02559 * 358.27930 * 16 15 13 18 18 C 1.46905 * 111.00034 * 145.70920 * 17 16 15 19 19 C 1.50695 * 109.47118 * 52.47279 * 18 17 16 20 20 H 1.08002 * 120.00420 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99840 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48512 * 109.47032 * 90.00189 * 23 21 19 25 25 H 1.48500 * 109.47149 * 209.99830 * 23 21 19 26 26 H 1.48493 * 109.47431 * 329.99994 * 23 21 19 27 27 H 1.09002 * 109.46937 * 304.98230 * 1 2 3 28 28 H 1.08994 * 109.46730 * 64.98168 * 1 2 3 29 29 H 1.08998 * 109.47088 * 184.98243 * 1 2 3 30 30 H 1.09000 * 109.47035 * 239.99539 * 2 1 3 31 31 H 1.09002 * 109.46999 * 119.99758 * 2 1 3 32 32 H 1.09003 * 109.47091 * 299.99765 * 5 3 2 33 33 H 1.08994 * 109.47492 * 59.99929 * 5 3 2 34 34 H 1.09004 * 109.47060 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.49405 * 98.43669 * 9 7 6 36 36 H 1.09001 * 109.49413 * 218.49105 * 9 7 6 37 37 H 1.09001 * 109.48379 * 292.66783 * 10 9 7 38 38 H 1.09005 * 109.50209 * 172.56749 * 10 9 7 39 39 H 1.09000 * 110.33369 * 336.82030 * 15 13 6 40 40 H 1.08994 * 110.33130 * 99.06001 * 15 13 6 41 41 H 1.09000 * 109.92474 * 117.62174 * 16 15 13 42 42 H 1.09001 * 109.92243 * 238.73337 * 16 15 13 43 43 H 1.09002 * 109.47146 * 172.47894 * 18 17 16 44 44 H 1.08998 * 109.46809 * 292.47623 * 18 17 16 45 45 H 0.96996 * 119.99833 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5643 1.4445 0.1326 6 7 1.6582 2.0954 -1.2546 7 6 0.9875 3.2448 -1.1674 8 8 0.7282 3.6873 -0.0684 9 6 0.5412 4.0126 -2.3803 10 6 1.3940 3.6033 -3.5814 11 6 1.3732 2.0787 -3.7210 12 1 0.3670 1.6906 -3.8803 13 6 2.0398 1.4410 -2.4872 14 1 1.7912 0.3808 -2.4391 15 6 3.5474 1.6129 -2.7594 16 6 3.6577 1.8095 -4.2837 17 7 2.2884 1.7080 -4.8336 18 6 2.1138 2.6085 -5.9811 19 6 3.2126 2.3642 -6.9831 20 1 3.9651 1.6146 -6.7873 21 6 3.2572 3.0975 -8.1498 22 7 2.3411 4.0106 -8.3880 23 14 4.6188 2.7942 -9.3921 24 1 4.1855 1.7514 -10.3567 25 1 4.9116 4.0534 -10.1229 26 1 5.8415 2.3367 -8.6846 27 1 -0.3633 0.5892 0.8420 28 1 -0.3632 0.4346 -0.9312 29 1 -0.3633 -1.0238 0.0893 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8484 0.9586 1.0661 33 1 4.0027 0.9041 -0.7063 34 1 3.9276 2.4722 0.1331 35 1 -0.5061 3.7912 -2.5859 36 1 0.6581 5.0809 -2.1979 37 1 2.4194 3.9411 -3.4313 38 1 0.9896 4.0571 -4.4863 39 1 3.9294 2.4893 -2.2359 40 1 4.0919 0.7200 -2.4523 41 1 4.0737 2.7930 -4.5022 42 1 4.2921 1.0342 -4.7133 43 1 1.1473 2.4187 -6.4481 44 1 2.1559 3.6431 -5.6407 45 1 2.3727 4.5268 -9.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:01 Heat of formation + Delta-G solvation = -28.487993 kcal Electronic energy + Delta-G solvation = -23912.235810 eV Core-core repulsion = 20736.477841 eV Total energy + Delta-G solvation = -3175.757969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12052 -38.36826 -36.66148 -33.86749 -32.75123 -32.20184 -30.28485 -29.80805 -27.93905 -26.20899 -24.16664 -23.74572 -22.91176 -21.43065 -20.88017 -19.53373 -17.85166 -16.85531 -16.59472 -16.18333 -15.64144 -14.94523 -14.63349 -14.35087 -14.18673 -13.87670 -13.63339 -13.55589 -13.11982 -13.04966 -12.49847 -12.46835 -12.25272 -11.89396 -11.79430 -11.69946 -11.27432 -11.19642 -11.11888 -11.05512 -11.02247 -10.70923 -10.66758 -10.55462 -10.37787 -10.18680 -9.93274 -9.32460 -9.17080 -8.58122 -8.51414 -7.37572 -6.10399 -4.11569 2.77219 3.08195 3.27524 3.34125 3.36719 4.36169 4.53104 4.65297 4.85723 4.87642 4.95525 5.00806 5.02872 5.21583 5.27799 5.32867 5.39175 5.44802 5.45983 5.52106 5.57017 5.66019 5.77469 5.81098 5.85746 5.87846 5.92219 5.98337 6.09184 6.13344 6.18923 6.26725 6.32329 6.54000 6.57845 6.64024 6.66958 7.09139 7.30083 7.61962 7.67377 7.90103 8.07804 8.30177 8.40526 8.95233 9.52967 11.00722 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.004745 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.788999 B = 5899.098323 C = 6299.273738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.122 3.878 4 H 0.103 0.897 5 C -0.169 4.169 6 N -0.583 5.583 7 C 0.522 3.478 8 O -0.564 6.564 9 C -0.133 4.133 10 C -0.150 4.150 11 C 0.060 3.940 12 H 0.094 0.906 13 C 0.141 3.859 14 H 0.092 0.908 15 C -0.144 4.144 16 C 0.053 3.947 17 N -0.509 5.509 18 C 0.178 3.822 19 C -0.515 4.515 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.008 0.992 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -5.622 14.699 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.019 3.981 4 H 0.121 0.879 5 C -0.227 4.227 6 N -0.314 5.314 7 C 0.312 3.688 8 O -0.444 6.444 9 C -0.173 4.173 10 C -0.189 4.189 11 C -0.049 4.049 12 H 0.112 0.888 13 C 0.036 3.964 14 H 0.110 0.890 15 C -0.183 4.183 16 C -0.076 4.076 17 N -0.233 5.233 18 C 0.053 3.947 19 C -0.553 4.553 20 H 0.080 0.920 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.138 -5.772 14.876 15.998 hybrid contribution 0.932 0.752 -0.696 1.385 sum -0.206 -5.021 14.180 15.044 Atomic orbital electron populations 1.21713 0.95459 1.01245 1.02192 1.21888 0.96632 0.96066 1.02608 1.21215 0.95155 0.93446 0.88298 0.87901 1.22378 0.95378 1.02465 1.02444 1.47024 1.55039 1.22416 1.06891 1.20274 0.76875 0.80467 0.91193 1.90650 1.57161 1.67836 1.28759 1.21632 1.01799 1.00819 0.93063 1.22261 1.00639 0.97836 0.98161 1.22888 0.98515 0.92755 0.90739 0.88785 1.21439 0.94814 0.97376 0.82747 0.89017 1.23062 0.95666 1.01684 0.97921 1.22630 0.92900 1.01353 0.90672 1.64956 1.01731 1.51964 1.04653 1.20042 0.98083 0.89925 0.86698 1.21177 1.11060 1.20045 1.03029 0.91954 1.24961 0.96208 0.95080 0.98121 1.69943 1.34292 1.23314 1.25976 0.86522 0.82140 0.77554 0.81347 1.20591 1.21303 1.19891 0.92782 0.92653 0.92842 0.91191 0.91032 0.91990 0.91160 0.92466 0.88516 0.88590 0.91244 0.88903 0.91426 0.91075 0.93194 0.90937 0.94945 0.97396 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.74 37.16 0.36 -1.18 16 2 C -0.13 -1.33 5.16 -26.73 -0.14 -1.46 16 3 C 0.12 1.44 2.49 -67.93 -0.17 1.27 16 4 H 0.10 1.39 6.58 -51.93 -0.34 1.05 16 5 C -0.17 -1.77 8.24 37.16 0.31 -1.46 16 6 N -0.58 -7.80 2.02 -159.15 -0.32 -8.12 16 7 C 0.52 7.99 7.48 -11.79 -0.09 7.90 16 8 O -0.56 -10.13 15.97 5.56 0.09 -10.04 16 9 C -0.13 -1.87 6.07 -28.12 -0.17 -2.04 16 10 C -0.15 -2.39 3.94 -26.73 -0.11 -2.50 16 11 C 0.06 0.97 3.45 -66.07 -0.23 0.74 16 12 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 13 C 0.14 1.92 2.87 -67.75 -0.19 1.73 16 14 H 0.09 1.19 6.10 -51.93 -0.32 0.88 16 15 C -0.14 -2.00 4.17 -25.56 -0.11 -2.11 16 16 C 0.05 0.94 4.79 -2.70 -0.01 0.93 16 17 N -0.51 -9.97 5.38 -224.29 -1.21 -11.18 16 18 C 0.18 4.27 4.17 -4.98 -0.02 4.25 16 19 C -0.51 -13.67 8.42 -34.44 -0.29 -13.96 16 20 H 0.06 1.64 6.84 -52.49 -0.36 1.28 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 23 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.69 6.27 -51.93 -0.33 0.37 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.72 5.04 -51.93 -0.26 0.46 16 34 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.18 6.91 -51.93 -0.36 0.82 16 38 H 0.09 1.65 6.33 -51.93 -0.33 1.32 16 39 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 40 H 0.07 0.86 6.82 -51.93 -0.35 0.51 16 41 H 0.05 0.98 7.37 -51.93 -0.38 0.60 16 42 H 0.07 1.31 7.73 -51.93 -0.40 0.91 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.01 0.21 5.56 -51.93 -0.29 -0.08 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -29.20 332.43 -9.12 -38.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.46 Total: 1.32 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.95 Total: -6.40 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.79 Total: -44.16 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.20 -9.12 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.836 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds