Wall clock time and date at job start Tue Mar 31 2020 01:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09001 * 109.47468 * 54.72848 * 3 2 1 5 5 C 1.53003 * 109.46770 * 174.72498 * 3 2 1 6 6 N 1.46497 * 109.47102 * 294.72058 * 3 2 1 7 7 C 1.33364 * 117.33434 * 125.96685 * 6 3 2 8 8 O 1.21274 * 118.76846 * 359.91773 * 7 6 3 9 9 C 1.50327 * 122.46184 * 179.90147 * 7 6 3 10 10 C 1.52890 * 109.36271 * 338.48794 * 9 7 6 11 11 C 1.53114 * 109.30552 * 52.61309 * 10 9 7 12 12 H 1.09010 * 112.35199 * 60.45329 * 11 10 9 13 13 C 1.44677 * 117.34089 * 305.94540 * 6 3 2 14 14 H 1.09004 * 110.00797 * 47.02175 * 13 6 3 15 15 C 1.54158 * 110.97645 * 285.26726 * 13 6 3 16 16 C 1.54087 * 105.00272 * 217.94186 * 15 13 6 17 17 N 1.47911 * 107.02559 * 358.27930 * 16 15 13 18 18 C 1.46905 * 111.00034 * 145.70920 * 17 16 15 19 19 C 1.50695 * 109.47118 * 52.47279 * 18 17 16 20 20 H 1.08002 * 120.00420 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99840 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48512 * 109.47032 * 90.00189 * 23 21 19 25 25 H 1.48500 * 109.47149 * 209.99830 * 23 21 19 26 26 H 1.48493 * 109.47431 * 329.99994 * 23 21 19 27 27 H 1.09002 * 109.46937 * 304.98230 * 1 2 3 28 28 H 1.08994 * 109.46730 * 64.98168 * 1 2 3 29 29 H 1.08998 * 109.47088 * 184.98243 * 1 2 3 30 30 H 1.09000 * 109.47035 * 239.99539 * 2 1 3 31 31 H 1.09002 * 109.46999 * 119.99758 * 2 1 3 32 32 H 1.09003 * 109.47091 * 299.99765 * 5 3 2 33 33 H 1.08994 * 109.47492 * 59.99929 * 5 3 2 34 34 H 1.09004 * 109.47060 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.49405 * 98.43669 * 9 7 6 36 36 H 1.09001 * 109.49413 * 218.49105 * 9 7 6 37 37 H 1.09001 * 109.48379 * 292.66783 * 10 9 7 38 38 H 1.09005 * 109.50209 * 172.56749 * 10 9 7 39 39 H 1.09000 * 110.33369 * 336.82030 * 15 13 6 40 40 H 1.08994 * 110.33130 * 99.06001 * 15 13 6 41 41 H 1.09000 * 109.92474 * 117.62174 * 16 15 13 42 42 H 1.09001 * 109.92243 * 238.73337 * 16 15 13 43 43 H 1.09002 * 109.47146 * 172.47894 * 18 17 16 44 44 H 1.08998 * 109.46809 * 292.47623 * 18 17 16 45 45 H 0.96996 * 119.99833 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5643 1.4445 0.1326 6 7 1.6582 2.0954 -1.2546 7 6 0.9875 3.2448 -1.1674 8 8 0.7282 3.6873 -0.0684 9 6 0.5412 4.0126 -2.3803 10 6 1.3940 3.6033 -3.5814 11 6 1.3732 2.0787 -3.7210 12 1 0.3670 1.6906 -3.8803 13 6 2.0398 1.4410 -2.4872 14 1 1.7912 0.3808 -2.4391 15 6 3.5474 1.6129 -2.7594 16 6 3.6577 1.8095 -4.2837 17 7 2.2884 1.7080 -4.8336 18 6 2.1138 2.6085 -5.9811 19 6 3.2126 2.3642 -6.9831 20 1 3.9651 1.6146 -6.7873 21 6 3.2572 3.0975 -8.1498 22 7 2.3411 4.0106 -8.3880 23 14 4.6188 2.7942 -9.3921 24 1 4.1855 1.7514 -10.3567 25 1 4.9116 4.0534 -10.1229 26 1 5.8415 2.3367 -8.6846 27 1 -0.3633 0.5892 0.8420 28 1 -0.3632 0.4346 -0.9312 29 1 -0.3633 -1.0238 0.0893 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8484 0.9586 1.0661 33 1 4.0027 0.9041 -0.7063 34 1 3.9276 2.4722 0.1331 35 1 -0.5061 3.7912 -2.5859 36 1 0.6581 5.0809 -2.1979 37 1 2.4194 3.9411 -3.4313 38 1 0.9896 4.0571 -4.4863 39 1 3.9294 2.4893 -2.2359 40 1 4.0919 0.7200 -2.4523 41 1 4.0737 2.7930 -4.5022 42 1 4.2921 1.0342 -4.7133 43 1 1.1473 2.4187 -6.4481 44 1 2.1559 3.6431 -5.6407 45 1 2.3727 4.5268 -9.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:00 Heat of formation + Delta-G solvation = -46.439699 kcal Electronic energy + Delta-G solvation = -23913.014254 eV Core-core repulsion = 20736.477841 eV Total energy + Delta-G solvation = -3176.536413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34366 -39.75045 -37.76805 -35.42560 -34.42128 -33.40848 -31.69899 -30.74647 -29.33313 -27.98142 -25.35600 -24.73460 -24.66432 -22.62007 -22.00332 -20.98626 -19.08048 -18.34138 -17.94990 -17.72233 -16.96773 -16.43890 -16.14924 -15.59344 -15.41594 -15.19785 -14.85077 -14.60110 -14.43702 -14.22935 -14.07565 -13.59682 -13.55616 -13.33372 -13.11491 -12.88194 -12.73804 -12.62428 -12.41395 -12.34399 -12.24950 -12.08821 -11.97600 -11.79984 -11.73645 -11.50979 -11.40755 -11.16470 -10.63271 -10.53394 -9.70017 -9.02328 -8.19560 -6.27443 1.42370 1.42935 1.53242 1.55522 1.95624 2.41500 3.14883 3.26292 3.43757 3.57759 3.69731 3.82706 3.99023 4.08472 4.13264 4.20227 4.22292 4.32092 4.41238 4.47957 4.55272 4.64895 4.72255 4.77317 4.80317 4.84822 4.92684 4.95250 5.03978 5.10548 5.11050 5.18106 5.19296 5.24356 5.31498 5.37083 5.42649 5.43687 5.61173 5.65502 5.98794 6.26583 6.44009 6.55334 6.88684 7.10880 7.41762 8.91872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.004745 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.788999 B = 5899.098323 C = 6299.273738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.119 3.881 4 H 0.085 0.915 5 C -0.164 4.164 6 N -0.576 5.576 7 C 0.520 3.480 8 O -0.592 6.592 9 C -0.126 4.126 10 C -0.138 4.138 11 C 0.057 3.943 12 H 0.100 0.900 13 C 0.153 3.847 14 H 0.112 0.888 15 C -0.130 4.130 16 C 0.054 3.946 17 N -0.516 5.516 18 C 0.194 3.806 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.005 3.995 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.264 1.264 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.002 0.998 44 H -0.008 1.008 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -7.504 15.845 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.222 4.222 6 N -0.306 5.306 7 C 0.310 3.690 8 O -0.475 6.475 9 C -0.166 4.166 10 C -0.177 4.177 11 C -0.052 4.052 12 H 0.118 0.882 13 C 0.048 3.952 14 H 0.129 0.871 15 C -0.169 4.169 16 C -0.075 4.075 17 N -0.240 5.240 18 C 0.067 3.933 19 C -0.565 4.565 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.572 5.572 23 Si 0.787 3.213 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.188 1.188 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.020 0.980 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.043 -7.685 16.038 17.784 hybrid contribution 0.560 1.333 -1.017 1.768 sum 0.516 -6.352 15.021 16.317 Atomic orbital electron populations 1.21706 0.95988 1.01916 1.00943 1.21881 0.96082 0.94612 1.04019 1.21385 0.96189 0.94287 0.86556 0.89667 1.22343 0.93971 1.01918 1.03944 1.47026 1.54168 1.21847 1.07538 1.20356 0.76933 0.80892 0.90837 1.90643 1.58513 1.68662 1.29635 1.21591 1.02214 1.01125 0.91700 1.22053 1.00000 0.97718 0.97976 1.22985 0.98418 0.92963 0.90845 0.88221 1.21332 0.94266 0.97915 0.81648 0.87080 1.22994 0.96053 1.03187 0.94647 1.22605 0.91568 0.99808 0.93490 1.64797 1.03533 1.50672 1.04951 1.19655 0.95817 0.89844 0.87945 1.21533 1.11509 1.19763 1.03681 0.91859 1.25813 0.98487 0.94857 1.00153 1.70067 1.36132 1.24366 1.26629 0.85487 0.79494 0.77434 0.78854 1.20053 1.21114 1.18843 0.93691 0.94220 0.91264 0.90491 0.88802 0.89781 0.90466 0.93962 0.86971 0.88064 0.92621 0.91323 0.91373 0.87989 0.95814 0.91104 0.97996 0.99039 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.74 71.98 0.70 -2.02 16 2 C -0.13 -2.10 5.16 30.60 0.16 -1.94 16 3 C 0.12 2.51 2.49 44.99 0.11 2.62 16 4 H 0.09 2.18 6.58 -2.39 -0.02 2.17 16 5 C -0.16 -2.93 8.24 71.98 0.59 -2.34 16 6 N -0.58 -14.46 2.02 -776.60 -1.57 -16.02 16 7 C 0.52 15.50 7.48 87.76 0.66 16.16 16 8 O -0.59 -20.98 15.97 -3.01 -0.05 -21.03 16 9 C -0.13 -3.52 6.07 29.69 0.18 -3.34 16 10 C -0.14 -4.51 3.94 30.60 0.12 -4.39 16 11 C 0.06 1.80 3.45 44.95 0.15 1.96 16 12 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 13 C 0.15 3.85 2.87 46.08 0.13 3.98 16 14 H 0.11 2.49 6.10 -2.38 -0.01 2.48 16 15 C -0.13 -3.31 4.17 31.35 0.13 -3.18 16 16 C 0.05 1.88 4.79 86.48 0.41 2.29 16 17 N -0.52 -20.26 5.38 -863.52 -4.64 -24.91 16 18 C 0.19 9.64 4.17 85.55 0.36 9.99 16 19 C -0.53 -28.43 8.42 25.60 0.22 -28.21 16 20 H 0.06 3.33 6.84 -2.91 -0.02 3.31 16 21 C 0.01 0.29 5.46 84.65 0.46 0.75 16 22 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 23 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.84 7.90 -2.39 -0.02 0.82 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.19 6.27 -2.39 -0.01 1.18 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.26 5.04 -2.39 -0.01 1.25 16 34 H 0.04 0.89 8.12 -2.38 -0.02 0.87 16 35 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.06 1.95 6.91 -2.39 -0.02 1.93 16 38 H 0.07 2.57 6.33 -2.38 -0.02 2.56 16 39 H 0.07 1.77 7.46 -2.39 -0.02 1.76 16 40 H 0.10 2.04 6.82 -2.39 -0.02 2.03 16 41 H 0.02 0.94 7.37 -2.39 -0.02 0.93 16 42 H 0.07 2.49 7.73 -2.39 -0.02 2.47 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H -0.01 -0.42 5.56 -2.39 -0.01 -0.43 16 45 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -64.00 332.43 1.41 -62.59 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.96 Total: 16.07 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.39 Total: -7.66 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -5.93 Total: -95.10 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -64.00 1.41 -62.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.153 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds