Wall clock time and date at job start Tue Mar 31 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46876 * 2 1 4 4 H 1.08995 * 109.47509 * 305.00476 * 3 2 1 5 5 C 1.52999 * 109.47046 * 184.99845 * 3 2 1 6 6 N 1.46498 * 109.46820 * 65.00437 * 3 2 1 7 7 C 1.46878 * 124.37274 * 240.00098 * 6 3 2 8 8 C 1.54708 * 105.52385 * 163.17708 * 7 6 3 9 9 C 1.53602 * 101.50818 * 24.52501 * 8 7 6 10 10 C 1.53253 * 111.08795 * 214.99208 * 9 8 7 11 11 C 1.54640 * 104.77261 * 239.48119 * 10 9 8 12 12 N 1.48840 * 104.54521 * 336.44079 * 11 10 9 13 13 C 1.46896 * 111.01636 * 158.43450 * 12 11 10 14 14 C 1.50702 * 109.47292 * 74.28543 * 13 12 11 15 15 H 1.07996 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99740 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00422 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46752 * 60.00278 * 18 16 14 20 20 H 1.48498 * 109.47537 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47190 * 300.00575 * 18 16 14 22 22 C 1.48800 * 104.45203 * 38.72837 * 12 11 10 23 23 C 1.34757 * 124.37336 * 59.99714 * 6 3 2 24 24 O 1.21282 * 125.13701 * 1.02682 * 23 6 3 25 25 H 1.09004 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47357 * 299.99542 * 1 2 3 27 27 H 1.09002 * 109.47433 * 60.00037 * 1 2 3 28 28 H 1.09003 * 109.47178 * 240.00785 * 2 1 3 29 29 H 1.08994 * 109.47555 * 120.00188 * 2 1 3 30 30 H 1.09001 * 109.46834 * 60.00656 * 5 3 2 31 31 H 1.09004 * 109.46838 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47482 * 300.00648 * 5 3 2 33 33 H 1.08999 * 110.23993 * 44.15980 * 7 6 3 34 34 H 1.09004 * 110.23537 * 282.18613 * 7 6 3 35 35 H 1.09010 * 111.01628 * 266.47261 * 8 7 6 36 36 H 1.08993 * 111.02008 * 142.58344 * 8 7 6 37 37 H 1.09002 * 110.39607 * 358.33832 * 10 9 8 38 38 H 1.09004 * 110.39868 * 120.62486 * 10 9 8 39 39 H 1.09000 * 110.40737 * 95.15020 * 11 10 9 40 40 H 1.09004 * 110.40648 * 217.57079 * 11 10 9 41 41 H 1.09008 * 109.46786 * 194.28117 * 13 12 11 42 42 H 1.08993 * 109.47640 * 314.28086 * 13 12 11 43 43 H 0.96998 * 119.99896 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.45322 * 202.80157 * 22 12 11 45 45 H 1.08996 * 110.56314 * 80.29729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5648 1.4445 -0.1257 6 7 1.6524 2.0975 1.2519 7 6 0.8068 3.2956 1.3337 8 6 0.3217 3.3606 2.8013 9 6 1.4248 2.5728 3.5239 10 6 0.8510 1.7690 4.6957 11 6 1.5982 2.2997 5.9413 12 7 2.8663 2.8641 5.4041 13 6 3.4464 3.8387 6.3377 14 6 4.0559 3.1115 7.5085 15 1 4.0160 2.0333 7.5547 16 6 4.6644 3.8229 8.5208 17 7 4.7126 5.1360 8.4648 18 14 5.4194 2.9216 9.9724 19 1 6.4833 2.0059 9.4876 20 1 6.0069 3.9067 10.9156 21 1 4.3687 2.1356 10.6677 22 6 2.4702 3.5186 4.1278 23 6 2.0256 1.6783 2.4770 24 8 2.7391 0.7234 2.7007 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8531 0.9572 -1.0571 31 1 3.9281 2.4722 -0.1252 32 1 3.9994 0.9054 0.7160 33 1 -0.0442 3.2034 0.6590 34 1 1.3881 4.1847 1.0891 35 1 -0.6461 2.8720 2.9152 36 1 0.2817 4.3909 3.1547 37 1 -0.2201 1.9476 4.7906 38 1 1.0474 0.7055 4.5593 39 1 1.0140 3.0782 6.4319 40 1 1.8064 1.4853 6.6353 41 1 4.2173 4.4163 5.8275 42 1 2.6652 4.5102 6.6938 43 1 5.1405 5.6364 9.1772 44 1 3.3298 3.6102 3.4639 45 1 2.0322 4.4981 4.3197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:49 Heat of formation + Delta-G solvation = -33.959915 kcal Electronic energy + Delta-G solvation = -23302.712636 eV Core-core repulsion = 20126.717387 eV Total energy + Delta-G solvation = -3175.995249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99745 -37.81602 -36.31207 -35.10858 -32.89345 -31.38022 -30.16631 -28.89846 -27.93798 -26.53762 -24.13838 -23.58226 -22.40238 -22.02467 -20.46746 -20.04790 -18.37855 -16.62820 -16.19649 -15.83882 -15.42805 -15.04240 -14.83808 -14.07145 -14.06299 -13.79496 -13.60243 -13.45162 -13.21661 -13.04334 -12.68234 -12.39327 -12.27133 -12.02767 -11.81059 -11.67387 -11.46478 -11.25696 -11.17579 -11.08421 -10.97606 -10.85065 -10.74987 -10.53841 -10.33140 -10.25792 -9.76784 -9.24658 -9.12036 -8.59302 -8.37918 -7.32885 -5.98339 -3.98922 2.86680 3.01951 3.38216 3.41232 3.45722 4.32250 4.45573 4.50243 4.67305 4.71971 4.89538 4.92363 5.03654 5.20354 5.22120 5.28812 5.34442 5.38857 5.45704 5.48404 5.51680 5.63703 5.70714 5.77573 5.81041 5.87482 5.90118 5.99168 6.03463 6.11975 6.16500 6.17910 6.24364 6.30449 6.59416 6.67439 6.76685 7.16544 7.25924 7.29967 7.82135 8.02852 8.20491 8.48112 8.55079 9.08989 9.65146 11.12761 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.004055 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.154717 B = 6903.929736 C = 7059.970015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.159 3.841 4 H 0.082 0.918 5 C -0.170 4.170 6 N -0.624 5.624 7 C 0.106 3.894 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.104 4.104 11 C 0.049 3.951 12 N -0.501 5.501 13 C 0.183 3.817 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.059 3.941 23 C 0.541 3.459 24 O -0.507 6.507 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.029 0.971 42 H -0.005 1.005 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -3.985 -18.473 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.057 3.943 4 H 0.101 0.899 5 C -0.228 4.228 6 N -0.360 5.360 7 C -0.018 4.018 8 C -0.162 4.162 9 C -0.103 4.103 10 C -0.143 4.143 11 C -0.079 4.079 12 N -0.225 5.225 13 C 0.057 3.943 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.070 4.070 23 C 0.328 3.672 24 O -0.381 6.381 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.012 0.988 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.753 -4.784 -18.391 21.835 hybrid contribution -0.134 0.483 0.880 1.013 sum -10.888 -4.302 -17.511 21.064 Atomic orbital electron populations 1.21708 0.95734 1.01445 1.01506 1.21954 0.96218 0.96402 1.03427 1.20918 0.95183 0.93107 0.85114 0.89937 1.22191 0.95101 1.02525 1.02938 1.48530 1.52149 1.29273 1.06031 1.22090 0.94100 0.87813 0.97758 1.22731 0.98021 1.01842 0.93599 1.21451 0.96662 0.96708 0.95503 1.22256 0.98513 1.00136 0.93384 1.22994 0.90413 0.99284 0.95255 1.65599 1.21788 1.32106 1.03048 1.19886 0.94170 0.89768 0.90460 1.21101 1.35637 0.93717 1.03702 0.91896 1.24983 0.96342 0.94845 0.98470 1.69950 1.44848 1.05566 1.33789 0.86548 0.79577 0.79274 0.81948 1.20141 1.21406 1.20264 1.22793 0.95710 0.94227 0.94292 1.20280 0.79598 0.84024 0.83270 1.90682 1.36149 1.27956 1.83281 0.92894 0.92684 0.93148 0.91185 0.90163 0.91822 0.92478 0.90676 0.90855 0.91347 0.90007 0.89096 0.91424 0.90727 0.94399 0.90266 0.95317 0.98758 0.92944 0.91211 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.80 37.16 0.36 -0.96 16 2 C -0.14 -1.47 5.36 -26.73 -0.14 -1.62 16 3 C 0.16 1.66 2.87 -67.93 -0.19 1.47 16 4 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 5 C -0.17 -1.91 9.20 37.16 0.34 -1.57 16 6 N -0.62 -7.56 2.29 -164.95 -0.38 -7.94 16 7 C 0.11 0.99 7.32 -2.94 -0.02 0.96 16 8 C -0.12 -1.30 6.19 -25.52 -0.16 -1.46 16 9 C -0.10 -1.50 0.83 -155.25 -0.13 -1.63 16 10 C -0.10 -1.66 6.27 -25.74 -0.16 -1.82 16 11 C 0.05 0.97 6.16 -1.89 -0.01 0.96 16 12 N -0.50 -11.43 5.33 -231.44 -1.23 -12.67 16 13 C 0.18 4.90 4.59 -4.98 -0.02 4.88 16 14 C -0.50 -14.65 8.97 -34.44 -0.31 -14.96 16 15 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.06 1.09 5.63 -2.58 -0.01 1.07 16 23 C 0.54 8.67 5.97 -11.22 -0.07 8.61 16 24 O -0.51 -10.10 14.67 5.56 0.08 -10.02 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.09 6.68 -51.93 -0.35 0.74 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.74 7.60 -51.92 -0.39 0.35 16 36 H 0.09 0.88 7.46 -51.93 -0.39 0.50 16 37 H 0.07 0.87 7.43 -51.93 -0.39 0.49 16 38 H 0.07 1.27 7.47 -51.93 -0.39 0.88 16 39 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.03 0.82 8.08 -51.92 -0.42 0.40 16 42 H -0.01 -0.15 7.77 -51.93 -0.40 -0.55 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 1.34 7.85 -51.93 -0.41 0.93 16 45 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -33.09 350.33 -9.18 -42.27 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -8.02 Total: -3.10 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.62 Total: -4.58 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.87 Total: -47.08 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.09 -9.18 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.309 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds