Wall clock time and date at job start Tue Mar 31 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46876 * 2 1 4 4 H 1.08995 * 109.47509 * 305.00476 * 3 2 1 5 5 C 1.52999 * 109.47046 * 184.99845 * 3 2 1 6 6 N 1.46498 * 109.46820 * 65.00437 * 3 2 1 7 7 C 1.46878 * 124.37274 * 240.00098 * 6 3 2 8 8 C 1.54708 * 105.52385 * 163.17708 * 7 6 3 9 9 C 1.53602 * 101.50818 * 24.52501 * 8 7 6 10 10 C 1.53253 * 111.08795 * 214.99208 * 9 8 7 11 11 C 1.54640 * 104.77261 * 239.48119 * 10 9 8 12 12 N 1.48840 * 104.54521 * 336.44079 * 11 10 9 13 13 C 1.46896 * 111.01636 * 158.43450 * 12 11 10 14 14 C 1.50702 * 109.47292 * 74.28543 * 13 12 11 15 15 H 1.07996 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99740 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00422 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46752 * 60.00278 * 18 16 14 20 20 H 1.48498 * 109.47537 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47190 * 300.00575 * 18 16 14 22 22 C 1.48800 * 104.45203 * 38.72837 * 12 11 10 23 23 C 1.34757 * 124.37336 * 59.99714 * 6 3 2 24 24 O 1.21282 * 125.13701 * 1.02682 * 23 6 3 25 25 H 1.09004 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47357 * 299.99542 * 1 2 3 27 27 H 1.09002 * 109.47433 * 60.00037 * 1 2 3 28 28 H 1.09003 * 109.47178 * 240.00785 * 2 1 3 29 29 H 1.08994 * 109.47555 * 120.00188 * 2 1 3 30 30 H 1.09001 * 109.46834 * 60.00656 * 5 3 2 31 31 H 1.09004 * 109.46838 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47482 * 300.00648 * 5 3 2 33 33 H 1.08999 * 110.23993 * 44.15980 * 7 6 3 34 34 H 1.09004 * 110.23537 * 282.18613 * 7 6 3 35 35 H 1.09010 * 111.01628 * 266.47261 * 8 7 6 36 36 H 1.08993 * 111.02008 * 142.58344 * 8 7 6 37 37 H 1.09002 * 110.39607 * 358.33832 * 10 9 8 38 38 H 1.09004 * 110.39868 * 120.62486 * 10 9 8 39 39 H 1.09000 * 110.40737 * 95.15020 * 11 10 9 40 40 H 1.09004 * 110.40648 * 217.57079 * 11 10 9 41 41 H 1.09008 * 109.46786 * 194.28117 * 13 12 11 42 42 H 1.08993 * 109.47640 * 314.28086 * 13 12 11 43 43 H 0.96998 * 119.99896 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.45322 * 202.80157 * 22 12 11 45 45 H 1.08996 * 110.56314 * 80.29729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5648 1.4445 -0.1257 6 7 1.6524 2.0975 1.2519 7 6 0.8068 3.2956 1.3337 8 6 0.3217 3.3606 2.8013 9 6 1.4248 2.5728 3.5239 10 6 0.8510 1.7690 4.6957 11 6 1.5982 2.2997 5.9413 12 7 2.8663 2.8641 5.4041 13 6 3.4464 3.8387 6.3377 14 6 4.0559 3.1115 7.5085 15 1 4.0160 2.0333 7.5547 16 6 4.6644 3.8229 8.5208 17 7 4.7126 5.1360 8.4648 18 14 5.4194 2.9216 9.9724 19 1 6.4833 2.0059 9.4876 20 1 6.0069 3.9067 10.9156 21 1 4.3687 2.1356 10.6677 22 6 2.4702 3.5186 4.1278 23 6 2.0256 1.6783 2.4770 24 8 2.7391 0.7234 2.7007 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8531 0.9572 -1.0571 31 1 3.9281 2.4722 -0.1252 32 1 3.9994 0.9054 0.7160 33 1 -0.0442 3.2034 0.6590 34 1 1.3881 4.1847 1.0891 35 1 -0.6461 2.8720 2.9152 36 1 0.2817 4.3909 3.1547 37 1 -0.2201 1.9476 4.7906 38 1 1.0474 0.7055 4.5593 39 1 1.0140 3.0782 6.4319 40 1 1.8064 1.4853 6.6353 41 1 4.2173 4.4163 5.8275 42 1 2.6652 4.5102 6.6938 43 1 5.1405 5.6364 9.1772 44 1 3.3298 3.6102 3.4639 45 1 2.0322 4.4981 4.3197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:49 Heat of formation + Delta-G solvation = -56.110764 kcal Electronic energy + Delta-G solvation = -23303.673169 eV Core-core repulsion = 20126.717387 eV Total energy + Delta-G solvation = -3176.955782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14393 -39.21162 -37.48867 -36.31451 -34.86683 -32.78034 -31.24805 -30.09992 -29.29283 -28.27460 -25.37580 -24.78577 -23.96272 -22.89654 -22.04904 -21.35562 -19.52967 -18.50382 -17.63171 -16.81848 -16.75446 -16.58265 -16.17467 -15.76484 -15.29784 -14.92844 -14.68352 -14.65861 -14.39421 -14.30041 -14.08142 -13.65883 -13.45449 -13.36778 -13.09378 -12.96249 -12.76883 -12.65801 -12.64577 -12.48051 -12.22308 -12.06892 -11.92302 -11.89181 -11.85012 -11.66006 -11.50447 -11.31392 -10.62806 -10.39039 -9.56226 -9.14999 -8.23335 -6.33368 1.37856 1.41733 1.49782 1.64313 2.09019 2.38520 3.08402 3.20511 3.39798 3.55287 3.66097 3.87625 3.99295 4.06965 4.12978 4.22922 4.28216 4.45105 4.48095 4.57910 4.61834 4.64352 4.71056 4.73578 4.76089 4.81489 4.87542 4.96145 5.00316 5.02164 5.08303 5.11385 5.13264 5.18328 5.24407 5.27939 5.30313 5.40487 5.61200 5.84433 5.98550 6.22780 6.24059 6.49785 6.81040 7.33186 7.36223 8.87537 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.004055 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.154717 B = 6903.929736 C = 7059.970015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.154 3.846 4 H 0.123 0.877 5 C -0.167 4.167 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.114 4.114 9 C -0.099 4.099 10 C -0.092 4.092 11 C 0.047 3.953 12 N -0.528 5.528 13 C 0.201 3.799 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.266 1.266 22 C 0.061 3.939 23 C 0.531 3.469 24 O -0.560 6.560 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.058 0.942 41 H -0.001 1.001 42 H -0.024 1.024 43 H 0.266 0.734 44 H 0.053 0.947 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 -3.683 -20.263 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.053 3.947 4 H 0.140 0.860 5 C -0.225 4.225 6 N -0.348 5.348 7 C -0.020 4.020 8 C -0.152 4.152 9 C -0.103 4.103 10 C -0.131 4.131 11 C -0.081 4.081 12 N -0.253 5.253 13 C 0.074 3.926 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.068 4.068 23 C 0.319 3.681 24 O -0.438 6.438 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.017 0.983 42 H -0.006 1.006 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.007 -4.460 -20.226 24.458 hybrid contribution 0.588 0.397 1.369 1.542 sum -12.419 -4.063 -18.857 22.942 Atomic orbital electron populations 1.21673 0.94227 1.01807 1.02162 1.21917 0.97478 0.96111 1.02291 1.21174 0.94559 0.93636 0.85352 0.85967 1.22166 0.96003 1.01971 1.02370 1.48633 1.51276 1.29557 1.05341 1.22395 0.95042 0.86785 0.97772 1.22784 0.97095 1.01920 0.93397 1.21433 0.97178 0.96319 0.95412 1.22192 1.00241 0.99099 0.91525 1.22983 0.89625 0.98523 0.96935 1.65433 1.24161 1.31680 1.03985 1.19498 0.92857 0.89754 0.90449 1.21375 1.36623 0.93446 1.05114 0.92885 1.25873 0.96454 0.95686 1.01301 1.70058 1.45286 1.07004 1.34851 0.85458 0.78792 0.78198 0.78303 1.19874 1.20191 1.19108 1.22784 0.96433 0.95505 0.92079 1.20487 0.79262 0.83552 0.84849 1.90656 1.38534 1.30317 1.84297 0.92866 0.93670 0.90616 0.89466 0.94228 0.89410 0.92645 0.94850 0.86936 0.90257 0.87482 0.87808 0.87392 0.92271 0.94294 0.92319 0.98337 1.00613 0.92517 0.92814 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.80 71.98 0.71 -1.42 16 2 C -0.14 -2.68 5.36 30.60 0.16 -2.52 16 3 C 0.15 2.85 2.87 44.99 0.13 2.98 16 4 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 5 C -0.17 -3.66 9.20 71.98 0.66 -3.00 16 6 N -0.61 -13.60 2.29 -794.18 -1.82 -15.42 16 7 C 0.10 1.47 7.32 86.89 0.64 2.10 16 8 C -0.11 -1.97 6.19 31.38 0.19 -1.78 16 9 C -0.10 -2.92 0.83 -52.66 -0.04 -2.96 16 10 C -0.09 -2.87 6.27 31.24 0.20 -2.68 16 11 C 0.05 1.94 6.16 86.49 0.53 2.47 16 12 N -0.53 -25.24 5.33 -886.13 -4.72 -29.96 16 13 C 0.20 11.34 4.59 85.56 0.39 11.74 16 14 C -0.53 -31.92 8.97 25.60 0.23 -31.69 16 15 H 0.05 3.24 7.81 -2.91 -0.02 3.21 16 16 C 0.01 0.30 5.46 84.65 0.46 0.76 16 17 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 18 Si 0.97 46.26 29.54 68.60 2.03 48.28 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 C 0.06 2.28 5.63 86.06 0.48 2.77 16 23 C 0.53 17.02 5.97 87.51 0.52 17.54 16 24 O -0.56 -23.52 14.67 -3.04 -0.04 -23.56 16 25 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.10 6.68 -2.39 -0.02 1.08 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.03 1.01 6.77 -2.39 -0.02 0.99 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.38 7.60 -2.38 -0.02 1.36 16 36 H 0.10 1.59 7.46 -2.39 -0.02 1.58 16 37 H 0.11 2.47 7.43 -2.39 -0.02 2.45 16 38 H 0.06 2.04 7.47 -2.38 -0.02 2.02 16 39 H 0.04 1.56 7.75 -2.39 -0.02 1.54 16 40 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 42 H -0.02 -1.39 7.77 -2.39 -0.02 -1.41 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.05 2.15 7.85 -2.39 -0.02 2.13 16 45 H 0.06 2.01 7.32 -2.39 -0.02 2.00 16 Total: -1.00 -77.57 350.33 1.93 -75.64 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.94 Total: 7.78 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.27 Total: -5.67 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -6.26 Total: -102.47 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.57 1.93 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.531 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds