Wall clock time and date at job start Tue Mar 31 2020 01:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 H 1.08998 * 109.47174 * 304.99234 * 3 2 1 5 5 C 1.53010 * 109.47034 * 184.99872 * 3 2 1 6 6 N 1.46491 * 109.47526 * 65.00013 * 3 2 1 7 7 C 1.46911 * 124.37619 * 240.02917 * 6 3 2 8 8 C 1.54770 * 105.53231 * 196.76703 * 7 6 3 9 9 C 1.53361 * 101.43875 * 335.69673 * 8 7 6 10 10 C 1.53316 * 111.50188 * 145.73817 * 9 8 7 11 11 C 1.54286 * 104.79186 * 141.01764 * 10 9 8 12 12 N 1.48009 * 107.20289 * 1.88683 * 11 10 9 13 13 C 1.46895 * 110.99987 * 214.51427 * 12 11 10 14 14 C 1.50701 * 109.47362 * 175.75207 * 13 12 11 15 15 H 1.07999 * 119.99652 * 5.22532 * 14 13 12 16 16 C 1.37873 * 120.00431 * 185.22131 * 14 13 12 17 17 N 1.31517 * 119.99671 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00241 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46857 * 90.00391 * 18 16 14 20 20 H 1.48501 * 109.47033 * 210.00131 * 18 16 14 21 21 H 1.48500 * 109.47179 * 330.00195 * 18 16 14 22 22 C 1.49065 * 105.86123 * 335.27894 * 12 11 10 23 23 C 1.34839 * 124.37554 * 60.02112 * 6 3 2 24 24 O 1.21279 * 125.19199 * 358.88685 * 23 6 3 25 25 H 1.09005 * 109.46554 * 60.00105 * 1 2 3 26 26 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47034 * 300.00785 * 1 2 3 28 28 H 1.09004 * 109.47316 * 239.99681 * 2 1 3 29 29 H 1.09000 * 109.46945 * 119.99629 * 2 1 3 30 30 H 1.08998 * 109.46619 * 299.99702 * 5 3 2 31 31 H 1.09004 * 109.47152 * 59.99724 * 5 3 2 32 32 H 1.08993 * 109.46954 * 179.97438 * 5 3 2 33 33 H 1.08998 * 110.23286 * 315.77617 * 7 6 3 34 34 H 1.08992 * 110.23846 * 77.66493 * 7 6 3 35 35 H 1.09006 * 111.02758 * 217.65596 * 8 7 6 36 36 H 1.08994 * 111.03534 * 93.74281 * 8 7 6 37 37 H 1.08995 * 110.37381 * 22.18805 * 10 9 8 38 38 H 1.08997 * 110.46402 * 259.89211 * 10 9 8 39 39 H 1.08999 * 109.92220 * 121.32860 * 11 10 9 40 40 H 1.08993 * 109.92215 * 242.43542 * 11 10 9 41 41 H 1.08996 * 109.47193 * 295.75220 * 13 12 11 42 42 H 1.09000 * 109.47117 * 55.75466 * 13 12 11 43 43 H 0.97006 * 119.99905 * 180.02562 * 17 16 14 44 44 H 1.08994 * 110.53489 * 279.14446 * 22 12 11 45 45 H 1.09001 * 110.72297 * 156.04445 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 0.8064 3.2957 1.3335 8 6 1.0229 3.8594 2.7586 9 6 1.4685 2.6037 3.5179 10 6 2.4962 2.9394 4.6050 11 6 2.1211 2.0322 5.7952 12 7 0.9726 1.2021 5.3681 13 6 0.0581 0.9516 6.4900 14 6 -1.1477 0.1946 5.9959 15 1 -1.1884 -0.1472 4.9722 16 6 -2.1987 -0.0618 6.8506 17 7 -2.1493 0.3549 8.0970 18 14 -3.6936 -0.9995 6.2378 19 1 -3.4881 -2.4542 6.4537 20 1 -4.8977 -0.5536 6.9840 21 1 -3.8835 -0.7360 4.7888 22 6 0.2968 1.9691 4.2832 23 6 2.0262 1.6785 2.4776 24 8 2.7097 0.7027 2.7046 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 3.9994 0.9052 0.7162 31 1 3.8533 0.9568 -1.0571 32 1 3.9282 2.4718 -0.1262 33 1 1.1162 4.0276 0.5876 34 1 -0.2402 3.0290 1.1873 35 1 0.0934 4.2551 3.1681 36 1 1.8052 4.6183 2.7644 37 1 2.4192 3.9890 4.8888 38 1 3.5047 2.7136 4.2587 39 1 2.9649 1.3930 6.0553 40 1 1.8396 2.6426 6.6532 41 1 0.5697 0.3628 7.2513 42 1 -0.2602 1.9019 6.9186 43 1 -2.8886 0.1742 8.6985 44 1 -0.3497 2.7387 4.7046 45 1 -0.2701 1.3014 3.6343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:52 Heat of formation + Delta-G solvation = -34.531449 kcal Electronic energy + Delta-G solvation = -23677.110107 eV Core-core repulsion = 20501.090075 eV Total energy + Delta-G solvation = -3176.020033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90655 -37.74873 -36.18432 -35.05321 -32.91143 -31.27352 -30.14833 -28.93102 -27.75367 -26.37373 -24.30998 -23.66812 -22.22647 -21.80516 -20.39077 -20.05208 -18.29448 -16.59560 -16.18860 -15.84178 -15.20487 -14.87722 -14.77440 -14.14766 -13.97506 -13.77835 -13.49094 -13.36297 -13.24082 -12.75883 -12.60012 -12.34827 -12.12623 -11.98454 -11.87892 -11.75284 -11.50671 -11.17531 -11.03782 -10.95874 -10.88910 -10.78555 -10.60292 -10.57062 -10.43495 -10.24182 -9.84122 -9.10568 -9.05407 -8.49011 -8.43139 -7.20749 -6.01706 -4.02853 2.97927 3.11330 3.32702 3.38583 3.41915 4.41348 4.45077 4.56133 4.74483 4.81790 4.98268 5.04085 5.12802 5.28170 5.31366 5.35920 5.36574 5.45124 5.48801 5.59606 5.61711 5.66768 5.69572 5.86581 5.89084 5.96065 6.02473 6.04154 6.16228 6.18531 6.27535 6.34161 6.38805 6.41836 6.57457 6.64711 6.85784 7.24124 7.34554 7.38926 7.80262 8.02655 8.22218 8.55945 8.59590 9.05681 9.61731 11.09526 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.005641 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.604312 B = 4962.577616 C = 5796.451913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.160 3.840 4 H 0.082 0.918 5 C -0.167 4.167 6 N -0.625 5.625 7 C 0.106 3.894 8 C -0.122 4.122 9 C -0.107 4.107 10 C -0.103 4.103 11 C 0.038 3.962 12 N -0.510 5.510 13 C 0.184 3.816 14 C -0.508 4.508 15 H 0.061 0.939 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.084 3.916 23 C 0.545 3.455 24 O -0.504 6.504 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.030 0.970 42 H -0.004 1.004 43 H 0.261 0.739 44 H 0.051 0.949 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 8.649 -16.449 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.057 3.943 4 H 0.100 0.900 5 C -0.225 4.225 6 N -0.361 5.361 7 C -0.017 4.017 8 C -0.161 4.161 9 C -0.111 4.111 10 C -0.141 4.141 11 C -0.090 4.090 12 N -0.234 5.234 13 C 0.059 3.941 14 C -0.547 4.547 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.045 4.045 23 C 0.332 3.668 24 O -0.378 6.378 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.014 0.986 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.728 7.553 -16.390 19.631 hybrid contribution -1.281 0.314 0.101 1.323 sum 6.447 7.867 -16.289 19.203 Atomic orbital electron populations 1.21709 0.95508 1.01755 1.01529 1.21956 0.96502 0.96175 1.03390 1.20904 0.94815 0.93405 0.85151 0.90031 1.22171 0.95392 1.02065 1.02835 1.48536 1.51891 1.29672 1.06030 1.22093 0.95032 0.86721 0.97862 1.22569 1.02993 0.96547 0.93945 1.21545 0.98924 0.95218 0.95419 1.22156 0.98087 0.99343 0.94550 1.22836 0.96230 0.94540 0.95411 1.64954 1.08078 1.39393 1.11011 1.19899 0.90410 0.95731 0.88105 1.21155 1.00863 1.35051 0.97618 0.92058 1.24976 0.98582 0.96039 0.94867 1.69963 1.32376 1.46660 1.04772 0.86530 0.82087 0.80251 0.78748 1.20583 1.21297 1.19904 1.22699 0.92497 0.95807 0.93489 1.20100 0.78941 0.84697 0.83019 1.90666 1.37528 1.26537 1.83037 0.93337 0.92740 0.92383 0.91417 0.89901 0.90925 0.91832 0.92752 0.91006 0.91269 0.89014 0.90166 0.91246 0.91311 0.91289 0.94470 0.95231 0.98585 0.92949 0.93118 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.80 37.15 0.36 -1.45 16 2 C -0.14 -1.76 5.36 -26.73 -0.14 -1.91 16 3 C 0.16 1.81 2.87 -67.93 -0.20 1.61 16 4 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 5 C -0.17 -1.81 9.20 37.16 0.34 -1.47 16 6 N -0.62 -8.14 2.30 -164.98 -0.38 -8.52 16 7 C 0.11 1.09 7.32 -2.89 -0.02 1.07 16 8 C -0.12 -1.37 6.17 -25.61 -0.16 -1.53 16 9 C -0.11 -1.68 0.73 -155.32 -0.11 -1.79 16 10 C -0.10 -1.60 5.97 -25.89 -0.15 -1.75 16 11 C 0.04 0.74 6.72 -2.54 -0.02 0.72 16 12 N -0.51 -11.73 5.35 -231.98 -1.24 -12.97 16 13 C 0.18 4.95 4.60 -4.98 -0.02 4.93 16 14 C -0.51 -14.58 8.55 -34.44 -0.29 -14.87 16 15 H 0.06 1.76 7.07 -52.49 -0.37 1.39 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 18 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.08 1.65 4.65 -2.28 -0.01 1.64 16 23 C 0.54 9.14 6.05 -11.31 -0.07 9.07 16 24 O -0.50 -10.31 14.97 5.56 0.08 -10.22 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.83 7.75 -51.93 -0.40 0.42 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.33 6.63 -51.93 -0.34 0.98 16 30 H 0.07 1.00 6.84 -51.93 -0.36 0.64 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.96 7.64 -51.93 -0.40 0.56 16 36 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 37 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 38 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.00 -0.10 7.98 -51.93 -0.41 -0.52 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.05 1.01 7.64 -51.93 -0.40 0.61 16 45 H 0.08 1.61 7.40 -51.93 -0.38 1.22 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -32.72 350.03 -9.18 -41.90 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.04 Total: -1.98 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.59 Total: -4.19 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.88 Total: -47.69 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.72 -9.18 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.366 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds