Wall clock time and date at job start Tue Mar 31 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 H 1.08998 * 109.47174 * 304.99234 * 3 2 1 5 5 C 1.53010 * 109.47034 * 184.99872 * 3 2 1 6 6 N 1.46491 * 109.47526 * 65.00013 * 3 2 1 7 7 C 1.46911 * 124.37619 * 240.02917 * 6 3 2 8 8 C 1.54770 * 105.53231 * 196.76703 * 7 6 3 9 9 C 1.53361 * 101.43875 * 335.69673 * 8 7 6 10 10 C 1.53316 * 111.50188 * 145.73817 * 9 8 7 11 11 C 1.54286 * 104.79186 * 141.01764 * 10 9 8 12 12 N 1.48009 * 107.20289 * 1.88683 * 11 10 9 13 13 C 1.46895 * 110.99987 * 214.51427 * 12 11 10 14 14 C 1.50701 * 109.47362 * 175.75207 * 13 12 11 15 15 H 1.07999 * 119.99652 * 5.22532 * 14 13 12 16 16 C 1.37873 * 120.00431 * 185.22131 * 14 13 12 17 17 N 1.31517 * 119.99671 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00241 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46857 * 90.00391 * 18 16 14 20 20 H 1.48501 * 109.47033 * 210.00131 * 18 16 14 21 21 H 1.48500 * 109.47179 * 330.00195 * 18 16 14 22 22 C 1.49065 * 105.86123 * 335.27894 * 12 11 10 23 23 C 1.34839 * 124.37554 * 60.02112 * 6 3 2 24 24 O 1.21279 * 125.19199 * 358.88685 * 23 6 3 25 25 H 1.09005 * 109.46554 * 60.00105 * 1 2 3 26 26 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47034 * 300.00785 * 1 2 3 28 28 H 1.09004 * 109.47316 * 239.99681 * 2 1 3 29 29 H 1.09000 * 109.46945 * 119.99629 * 2 1 3 30 30 H 1.08998 * 109.46619 * 299.99702 * 5 3 2 31 31 H 1.09004 * 109.47152 * 59.99724 * 5 3 2 32 32 H 1.08993 * 109.46954 * 179.97438 * 5 3 2 33 33 H 1.08998 * 110.23286 * 315.77617 * 7 6 3 34 34 H 1.08992 * 110.23846 * 77.66493 * 7 6 3 35 35 H 1.09006 * 111.02758 * 217.65596 * 8 7 6 36 36 H 1.08994 * 111.03534 * 93.74281 * 8 7 6 37 37 H 1.08995 * 110.37381 * 22.18805 * 10 9 8 38 38 H 1.08997 * 110.46402 * 259.89211 * 10 9 8 39 39 H 1.08999 * 109.92220 * 121.32860 * 11 10 9 40 40 H 1.08993 * 109.92215 * 242.43542 * 11 10 9 41 41 H 1.08996 * 109.47193 * 295.75220 * 13 12 11 42 42 H 1.09000 * 109.47117 * 55.75466 * 13 12 11 43 43 H 0.97006 * 119.99905 * 180.02562 * 17 16 14 44 44 H 1.08994 * 110.53489 * 279.14446 * 22 12 11 45 45 H 1.09001 * 110.72297 * 156.04445 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2517 7 6 0.8064 3.2957 1.3335 8 6 1.0229 3.8594 2.7586 9 6 1.4685 2.6037 3.5179 10 6 2.4962 2.9394 4.6050 11 6 2.1211 2.0322 5.7952 12 7 0.9726 1.2021 5.3681 13 6 0.0581 0.9516 6.4900 14 6 -1.1477 0.1946 5.9959 15 1 -1.1884 -0.1472 4.9722 16 6 -2.1987 -0.0618 6.8506 17 7 -2.1493 0.3549 8.0970 18 14 -3.6936 -0.9995 6.2378 19 1 -3.4881 -2.4542 6.4537 20 1 -4.8977 -0.5536 6.9840 21 1 -3.8835 -0.7360 4.7888 22 6 0.2968 1.9691 4.2832 23 6 2.0262 1.6785 2.4776 24 8 2.7097 0.7027 2.7046 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 3.9994 0.9052 0.7162 31 1 3.8533 0.9568 -1.0571 32 1 3.9282 2.4718 -0.1262 33 1 1.1162 4.0276 0.5876 34 1 -0.2402 3.0290 1.1873 35 1 0.0934 4.2551 3.1681 36 1 1.8052 4.6183 2.7644 37 1 2.4192 3.9890 4.8888 38 1 3.5047 2.7136 4.2587 39 1 2.9649 1.3930 6.0553 40 1 1.8396 2.6426 6.6532 41 1 0.5697 0.3628 7.2513 42 1 -0.2602 1.9019 6.9186 43 1 -2.8886 0.1742 8.6985 44 1 -0.3497 2.7387 4.7046 45 1 -0.2701 1.3014 3.6343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:51 Heat of formation + Delta-G solvation = -56.407115 kcal Electronic energy + Delta-G solvation = -23678.058707 eV Core-core repulsion = 20501.090075 eV Total energy + Delta-G solvation = -3176.968633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10832 -39.17991 -37.42492 -36.31897 -34.90031 -32.75874 -31.33395 -30.14272 -29.01751 -28.28320 -25.71215 -24.77275 -23.82171 -22.83323 -21.94170 -21.43152 -19.53247 -18.46632 -17.59517 -16.91716 -16.78469 -16.53502 -15.97876 -15.67772 -15.42306 -14.92451 -14.71497 -14.58725 -14.35850 -14.26301 -13.95022 -13.75180 -13.57458 -13.42327 -12.99848 -12.96024 -12.81932 -12.67776 -12.59899 -12.52315 -12.23552 -12.09678 -11.92516 -11.90290 -11.81478 -11.63439 -11.53440 -11.24586 -10.66790 -10.32244 -9.52159 -9.05898 -8.25134 -6.35655 1.36313 1.38902 1.49542 1.69907 2.13260 2.36700 3.07664 3.22550 3.46425 3.54185 3.69574 3.89392 3.97371 4.09518 4.13646 4.23435 4.26350 4.46022 4.46414 4.59503 4.67283 4.70525 4.73162 4.73598 4.77783 4.84981 4.88299 4.96483 4.97308 5.02133 5.07140 5.10878 5.15352 5.22863 5.26566 5.27946 5.30912 5.36931 5.59286 5.88142 5.95914 6.20661 6.29328 6.53683 6.80330 7.34601 7.39005 8.86668 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.005641 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.604312 B = 4962.577616 C = 5796.451913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.155 3.845 4 H 0.121 0.879 5 C -0.160 4.160 6 N -0.617 5.617 7 C 0.102 3.898 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.092 4.092 11 C 0.034 3.966 12 N -0.534 5.534 13 C 0.202 3.798 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.264 1.264 22 C 0.089 3.911 23 C 0.534 3.466 24 O -0.555 6.555 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.036 0.964 41 H -0.005 1.005 42 H -0.025 1.025 43 H 0.266 0.734 44 H 0.048 0.952 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 10.707 -19.538 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.053 3.947 4 H 0.139 0.861 5 C -0.218 4.218 6 N -0.351 5.351 7 C -0.020 4.020 8 C -0.151 4.151 9 C -0.110 4.110 10 C -0.130 4.130 11 C -0.095 4.095 12 N -0.259 5.259 13 C 0.076 3.924 14 C -0.565 4.565 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.189 1.189 22 C -0.039 4.039 23 C 0.321 3.679 24 O -0.432 6.432 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.013 0.987 42 H -0.007 1.007 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.049 9.649 -19.518 22.886 hybrid contribution -1.035 -0.366 1.062 1.528 sum 6.014 9.283 -18.456 21.517 Atomic orbital electron populations 1.21680 0.95376 1.01407 1.01648 1.21934 0.96546 0.97163 1.02270 1.21160 0.95340 0.92833 0.85363 0.86100 1.22115 0.94851 1.02511 1.02367 1.48651 1.50912 1.30094 1.05453 1.22384 0.94962 0.86260 0.98412 1.22635 1.04324 0.94698 0.93428 1.21521 0.96902 0.97166 0.95398 1.22138 0.98117 1.00206 0.92583 1.22890 0.94455 0.94754 0.97374 1.64782 1.08518 1.42138 1.10417 1.19511 0.90413 0.93896 0.88624 1.21360 1.01960 1.35764 0.97424 0.92841 1.25878 1.01718 0.96692 0.94887 1.70081 1.33556 1.47495 1.05957 0.85422 0.78153 0.78605 0.78700 1.20176 1.19989 1.18872 1.22576 0.93899 0.94971 0.92447 1.20347 0.78698 0.84236 0.84580 1.90640 1.39977 1.28570 1.84032 0.90258 0.93496 0.94960 0.89099 0.94467 0.94630 0.89602 0.91495 0.86838 0.90835 0.88024 0.87216 0.87749 0.91005 0.92276 0.94554 0.98715 1.00689 0.92501 0.93337 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.80 71.98 0.71 -2.66 16 2 C -0.14 -3.37 5.36 30.59 0.16 -3.21 16 3 C 0.15 3.08 2.87 45.00 0.13 3.21 16 4 H 0.12 1.54 8.07 -2.39 -0.02 1.52 16 5 C -0.16 -3.14 9.20 71.99 0.66 -2.48 16 6 N -0.62 -14.75 2.30 -794.23 -1.82 -16.58 16 7 C 0.10 1.68 7.32 86.90 0.64 2.32 16 8 C -0.11 -2.12 6.17 31.32 0.19 -1.92 16 9 C -0.11 -3.23 0.73 -52.71 -0.04 -3.26 16 10 C -0.09 -2.78 5.97 31.14 0.19 -2.59 16 11 C 0.03 1.34 6.72 86.53 0.58 1.92 16 12 N -0.53 -25.88 5.35 -887.86 -4.75 -30.63 16 13 C 0.20 11.54 4.60 85.56 0.39 11.93 16 14 C -0.53 -31.45 8.55 25.60 0.22 -31.23 16 15 H 0.05 3.20 7.07 -2.91 -0.02 3.18 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 18 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.09 3.63 4.65 86.11 0.40 4.03 16 23 C 0.53 17.85 6.05 87.42 0.53 18.37 16 24 O -0.55 -23.71 14.97 -3.02 -0.05 -23.75 16 25 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 0.90 7.75 -2.39 -0.02 0.88 16 28 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.24 6.63 -2.39 -0.02 1.22 16 30 H 0.03 0.97 6.84 -2.39 -0.02 0.95 16 31 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.76 7.64 -2.38 -0.02 1.75 16 36 H 0.11 1.49 7.90 -2.39 -0.02 1.47 16 37 H 0.10 2.41 7.82 -2.39 -0.02 2.39 16 38 H 0.07 2.14 7.83 -2.39 -0.02 2.13 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.04 1.44 7.66 -2.39 -0.02 1.42 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H -0.02 -1.47 7.98 -2.39 -0.02 -1.48 16 43 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 44 H 0.05 1.96 7.64 -2.39 -0.02 1.94 16 45 H 0.05 2.28 7.40 -2.39 -0.02 2.26 16 Total: -1.00 -76.92 350.03 1.85 -75.07 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.94 Total: 9.98 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.22 Total: -4.71 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -6.29 Total: -104.08 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.92 1.85 -75.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.667 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds