Wall clock time and date at job start Tue Mar 31 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47392 * 2 1 4 4 H 1.08999 * 109.46869 * 54.99755 * 3 2 1 5 5 C 1.53000 * 109.47303 * 174.99890 * 3 2 1 6 6 N 1.46501 * 109.46881 * 295.00119 * 3 2 1 7 7 C 1.46908 * 124.37628 * 120.03067 * 6 3 2 8 8 C 1.54759 * 105.53484 * 196.77423 * 7 6 3 9 9 C 1.53379 * 101.44005 * 335.68564 * 8 7 6 10 10 C 1.53881 * 111.13916 * 262.15725 * 9 8 7 11 11 C 1.55132 * 101.52709 * 205.20213 * 10 9 8 12 12 N 1.47953 * 104.94465 * 35.79471 * 11 10 9 13 13 C 1.46904 * 111.00132 * 213.89773 * 12 11 10 14 14 C 1.50706 * 109.46676 * 290.78263 * 13 12 11 15 15 H 1.08005 * 120.00138 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00073 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 119.99815 * 18 16 14 21 21 H 1.48498 * 109.47295 * 240.00422 * 18 16 14 22 22 C 1.47759 * 108.52253 * 336.13079 * 12 11 10 23 23 C 1.34829 * 124.37339 * 300.02067 * 6 3 2 24 24 O 1.21281 * 125.18884 * 358.82897 * 23 6 3 25 25 H 1.08996 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47206 * 300.00026 * 1 2 3 27 27 H 1.09005 * 109.47010 * 60.00137 * 1 2 3 28 28 H 1.08999 * 109.46513 * 239.99348 * 2 1 3 29 29 H 1.08999 * 109.46679 * 120.00055 * 2 1 3 30 30 H 1.08999 * 109.46818 * 300.00502 * 5 3 2 31 31 H 1.09006 * 109.46714 * 59.99759 * 5 3 2 32 32 H 1.08992 * 109.46986 * 179.97438 * 5 3 2 33 33 H 1.09006 * 110.23073 * 315.78154 * 7 6 3 34 34 H 1.08994 * 110.24230 * 77.66696 * 7 6 3 35 35 H 1.09003 * 111.03500 * 217.64884 * 8 7 6 36 36 H 1.08997 * 111.03571 * 93.72244 * 8 7 6 37 37 H 1.09007 * 111.01014 * 323.25996 * 10 9 8 38 38 H 1.08992 * 111.01868 * 87.09573 * 10 9 8 39 39 H 1.09006 * 110.34055 * 276.92667 * 11 10 9 40 40 H 1.08997 * 110.34829 * 154.66710 * 11 10 9 41 41 H 1.08996 * 109.47230 * 170.78811 * 13 12 11 42 42 H 1.08994 * 109.47304 * 50.78320 * 13 12 11 43 43 H 0.97000 * 119.99651 * 0.02562 * 17 16 14 44 44 H 1.08999 * 109.97866 * 121.22390 * 22 12 11 45 45 H 1.09003 * 109.98300 * 242.51505 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0974 -1.2518 7 6 0.8074 3.2963 -1.3336 8 6 0.3226 3.3622 -2.8018 9 6 1.4218 2.5704 -3.5211 10 6 2.4680 3.5123 -4.1426 11 6 3.0301 2.6356 -5.2924 12 7 1.8676 1.8672 -5.7896 13 6 2.2741 0.5283 -6.2372 14 6 3.1015 0.6477 -7.4912 15 1 3.3054 1.6208 -7.9131 16 6 3.5981 -0.4854 -8.0997 17 7 3.3494 -1.6704 -7.5863 18 14 4.6231 -0.3377 -9.6544 19 1 4.7564 1.0942 -10.0252 20 1 5.9707 -0.9141 -9.4156 21 1 3.9576 -1.0753 -10.7581 22 6 0.8641 1.7820 -4.7084 23 6 2.0255 1.6778 -2.4777 24 8 2.7405 0.7243 -2.7025 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8532 0.9568 1.0571 31 1 3.9995 0.9051 -0.7161 32 1 3.9282 2.4718 0.1253 33 1 -0.0441 3.2040 -0.6593 34 1 1.3885 4.1848 -1.0869 35 1 0.2871 4.3924 -3.1563 36 1 -0.6469 2.8774 -2.9159 37 1 1.9981 4.4150 -4.5332 38 1 3.2475 3.7603 -3.4224 39 1 3.7971 1.9601 -4.9136 40 1 3.4357 3.2645 -6.0849 41 1 1.3871 -0.0708 -6.4429 42 1 2.8642 0.0479 -5.4569 43 1 2.8163 -1.7472 -6.7796 44 1 -0.0770 2.2219 -5.0383 45 1 0.7098 0.7409 -4.4247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:58 Heat of formation + Delta-G solvation = -37.498318 kcal Electronic energy + Delta-G solvation = -23675.687886 eV Core-core repulsion = 20499.539200 eV Total energy + Delta-G solvation = -3176.148686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12316 -37.86993 -36.38169 -35.19683 -33.04675 -31.27291 -30.11235 -29.09333 -27.97007 -26.04395 -24.18191 -23.43528 -22.46439 -22.08245 -20.70226 -20.13031 -18.44777 -16.84824 -16.47955 -15.92190 -15.39384 -14.93097 -14.81149 -13.99727 -13.90708 -13.72545 -13.59741 -13.47174 -13.32795 -12.96633 -12.74081 -12.38889 -12.32908 -12.23663 -12.05204 -11.83509 -11.46383 -11.23713 -11.10130 -11.07729 -10.97102 -10.79188 -10.66565 -10.51175 -10.42436 -10.13996 -10.01660 -9.23901 -8.65782 -8.51322 -8.25105 -7.24546 -6.24234 -3.91715 2.76249 2.95938 3.51033 3.56090 3.69604 4.28122 4.41157 4.60621 4.63591 4.68468 4.84241 4.87523 4.95286 5.14803 5.19461 5.21980 5.27172 5.41462 5.44121 5.50542 5.53198 5.57846 5.68314 5.74142 5.76479 5.81486 5.85689 5.91578 6.01560 6.04651 6.15249 6.16494 6.23131 6.31693 6.61939 6.67845 6.70518 7.07074 7.18157 7.32449 7.86185 8.07620 8.39627 8.43016 8.71734 9.00512 9.79417 11.15400 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004786 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.040170 B = 5849.597603 C = 6291.601406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.159 3.841 4 H 0.083 0.917 5 C -0.169 4.169 6 N -0.622 5.622 7 C 0.106 3.894 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.516 5.516 13 C 0.178 3.822 14 C -0.585 4.585 15 H 0.055 0.945 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 1.078 2.922 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.066 3.934 23 C 0.533 3.467 24 O -0.505 6.505 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.014 0.986 42 H -0.007 1.007 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 11.572 18.014 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.057 3.943 4 H 0.101 0.899 5 C -0.227 4.227 6 N -0.359 5.359 7 C -0.018 4.018 8 C -0.156 4.156 9 C -0.123 4.123 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.240 5.240 13 C 0.052 3.948 14 C -0.624 4.624 15 H 0.074 0.926 16 C -0.192 4.192 17 N -0.554 5.554 18 Si 0.907 3.093 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.063 4.063 23 C 0.321 3.679 24 O -0.378 6.378 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.469 10.369 16.383 20.145 hybrid contribution -0.582 0.457 2.006 2.138 sum -6.051 10.826 18.390 22.181 Atomic orbital electron populations 1.21704 0.95627 1.01635 1.01405 1.21961 0.96350 0.96267 1.03559 1.20930 0.95116 0.93250 0.85002 0.89868 1.22187 0.95159 1.02282 1.03064 1.48549 1.52134 1.29198 1.05977 1.22109 0.94116 0.87620 0.97910 1.22536 0.98229 1.01581 0.93259 1.21815 0.97345 0.97109 0.95992 1.22566 0.96643 0.97542 0.97641 1.22890 0.93725 0.95558 0.94616 1.63809 1.10082 1.19272 1.30834 1.20033 0.95004 0.84146 0.95640 1.22016 1.34477 0.95435 1.10431 0.92620 1.25831 0.97920 0.92348 1.03053 1.70706 1.37889 1.24480 1.22357 0.83429 0.75993 0.74917 0.75002 1.21503 1.21541 1.21437 1.22587 0.97157 0.98225 0.88290 1.20330 0.79920 0.84175 0.83525 1.90751 1.36178 1.27677 1.83242 0.92737 0.93138 0.92742 0.90131 0.91087 0.91682 0.90767 0.92631 0.90806 0.91470 0.88993 0.89904 0.90004 0.91637 0.93299 0.90793 0.96767 0.98881 0.92212 0.90806 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.80 37.16 0.36 -1.15 16 2 C -0.14 -1.67 5.36 -26.73 -0.14 -1.81 16 3 C 0.16 1.74 2.87 -67.93 -0.20 1.55 16 4 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 5 C -0.17 -1.93 9.20 37.16 0.34 -1.59 16 6 N -0.62 -7.72 2.30 -164.98 -0.38 -8.10 16 7 C 0.11 0.96 7.32 -2.89 -0.02 0.93 16 8 C -0.12 -1.20 6.15 -25.61 -0.16 -1.36 16 9 C -0.12 -1.80 0.66 -155.32 -0.10 -1.90 16 10 C -0.11 -1.62 6.02 -25.14 -0.15 -1.77 16 11 C 0.06 1.25 6.09 -2.12 -0.01 1.24 16 12 N -0.52 -11.91 5.17 -232.99 -1.20 -13.11 16 13 C 0.18 4.99 3.64 -4.97 -0.02 4.97 16 14 C -0.58 -17.61 8.81 -34.44 -0.30 -17.91 16 15 H 0.06 1.67 7.77 -52.48 -0.41 1.26 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 17 N -0.92 -29.60 13.65 55.43 0.76 -28.85 16 18 Si 1.08 26.67 29.90 -169.99 -5.08 21.59 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.07 1.26 5.95 -3.33 -0.02 1.24 16 23 C 0.53 8.91 5.95 -11.30 -0.07 8.85 16 24 O -0.51 -10.85 14.98 5.56 0.08 -10.77 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16 28 H 0.08 1.25 6.69 -51.93 -0.35 0.90 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.77 7.62 -51.93 -0.40 0.37 16 36 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 37 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 38 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 39 H 0.05 1.16 7.62 -51.93 -0.40 0.77 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.01 0.42 7.91 -51.93 -0.41 0.01 16 42 H -0.01 -0.20 7.71 -51.93 -0.40 -0.60 16 43 H 0.27 8.73 7.22 -40.82 -0.29 8.44 16 44 H 0.07 1.24 7.79 -51.93 -0.40 0.83 16 45 H 0.05 1.04 7.24 -51.93 -0.38 0.67 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -35.24 349.56 -9.15 -44.39 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.01 Total: -1.95 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.58 Total: -8.46 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.83 Total: -50.06 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -5.08 Total: 21.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.24 -9.15 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.892 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds