Wall clock time and date at job start Tue Mar 31 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47392 * 2 1 4 4 H 1.08999 * 109.46869 * 54.99755 * 3 2 1 5 5 C 1.53000 * 109.47303 * 174.99890 * 3 2 1 6 6 N 1.46501 * 109.46881 * 295.00119 * 3 2 1 7 7 C 1.46908 * 124.37628 * 120.03067 * 6 3 2 8 8 C 1.54759 * 105.53484 * 196.77423 * 7 6 3 9 9 C 1.53379 * 101.44005 * 335.68564 * 8 7 6 10 10 C 1.53881 * 111.13916 * 262.15725 * 9 8 7 11 11 C 1.55132 * 101.52709 * 205.20213 * 10 9 8 12 12 N 1.47953 * 104.94465 * 35.79471 * 11 10 9 13 13 C 1.46904 * 111.00132 * 213.89773 * 12 11 10 14 14 C 1.50706 * 109.46676 * 290.78263 * 13 12 11 15 15 H 1.08005 * 120.00138 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00073 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 119.99815 * 18 16 14 21 21 H 1.48498 * 109.47295 * 240.00422 * 18 16 14 22 22 C 1.47759 * 108.52253 * 336.13079 * 12 11 10 23 23 C 1.34829 * 124.37339 * 300.02067 * 6 3 2 24 24 O 1.21281 * 125.18884 * 358.82897 * 23 6 3 25 25 H 1.08996 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47206 * 300.00026 * 1 2 3 27 27 H 1.09005 * 109.47010 * 60.00137 * 1 2 3 28 28 H 1.08999 * 109.46513 * 239.99348 * 2 1 3 29 29 H 1.08999 * 109.46679 * 120.00055 * 2 1 3 30 30 H 1.08999 * 109.46818 * 300.00502 * 5 3 2 31 31 H 1.09006 * 109.46714 * 59.99759 * 5 3 2 32 32 H 1.08992 * 109.46986 * 179.97438 * 5 3 2 33 33 H 1.09006 * 110.23073 * 315.78154 * 7 6 3 34 34 H 1.08994 * 110.24230 * 77.66696 * 7 6 3 35 35 H 1.09003 * 111.03500 * 217.64884 * 8 7 6 36 36 H 1.08997 * 111.03571 * 93.72244 * 8 7 6 37 37 H 1.09007 * 111.01014 * 323.25996 * 10 9 8 38 38 H 1.08992 * 111.01868 * 87.09573 * 10 9 8 39 39 H 1.09006 * 110.34055 * 276.92667 * 11 10 9 40 40 H 1.08997 * 110.34829 * 154.66710 * 11 10 9 41 41 H 1.08996 * 109.47230 * 170.78811 * 13 12 11 42 42 H 1.08994 * 109.47304 * 50.78320 * 13 12 11 43 43 H 0.97000 * 119.99651 * 0.02562 * 17 16 14 44 44 H 1.08999 * 109.97866 * 121.22390 * 22 12 11 45 45 H 1.09003 * 109.98300 * 242.51505 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0974 -1.2518 7 6 0.8074 3.2963 -1.3336 8 6 0.3226 3.3622 -2.8018 9 6 1.4218 2.5704 -3.5211 10 6 2.4680 3.5123 -4.1426 11 6 3.0301 2.6356 -5.2924 12 7 1.8676 1.8672 -5.7896 13 6 2.2741 0.5283 -6.2372 14 6 3.1015 0.6477 -7.4912 15 1 3.3054 1.6208 -7.9131 16 6 3.5981 -0.4854 -8.0997 17 7 3.3494 -1.6704 -7.5863 18 14 4.6231 -0.3377 -9.6544 19 1 4.7564 1.0942 -10.0252 20 1 5.9707 -0.9141 -9.4156 21 1 3.9576 -1.0753 -10.7581 22 6 0.8641 1.7820 -4.7084 23 6 2.0255 1.6778 -2.4777 24 8 2.7405 0.7243 -2.7025 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8532 0.9568 1.0571 31 1 3.9995 0.9051 -0.7161 32 1 3.9282 2.4718 0.1253 33 1 -0.0441 3.2040 -0.6593 34 1 1.3885 4.1848 -1.0869 35 1 0.2871 4.3924 -3.1563 36 1 -0.6469 2.8774 -2.9159 37 1 1.9981 4.4150 -4.5332 38 1 3.2475 3.7603 -3.4224 39 1 3.7971 1.9601 -4.9136 40 1 3.4357 3.2645 -6.0849 41 1 1.3871 -0.0708 -6.4429 42 1 2.8642 0.0479 -5.4569 43 1 2.8163 -1.7472 -6.7796 44 1 -0.0770 2.2219 -5.0383 45 1 0.7098 0.7409 -4.4247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:58 Heat of formation + Delta-G solvation = -62.710024 kcal Electronic energy + Delta-G solvation = -23676.781147 eV Core-core repulsion = 20499.539200 eV Total energy + Delta-G solvation = -3177.241947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31485 -39.31290 -37.64484 -36.50660 -35.10049 -32.65726 -31.33599 -30.35449 -29.22042 -27.94417 -25.45975 -24.75508 -24.28484 -22.96355 -22.18642 -21.58437 -19.67504 -18.96324 -17.67856 -16.93042 -16.65640 -16.46434 -16.26230 -15.65067 -15.38958 -15.09865 -14.90555 -14.56232 -14.47823 -14.38205 -14.27164 -13.93382 -13.52359 -13.43279 -13.28588 -12.95483 -12.87720 -12.74254 -12.64217 -12.52290 -12.14538 -12.13608 -12.02700 -11.97927 -11.91395 -11.78022 -11.57634 -10.80730 -10.63304 -10.48522 -9.65633 -9.22227 -8.74792 -6.44659 1.48272 1.50267 1.60228 1.77192 2.00516 2.53120 3.09537 3.14674 3.26366 3.45417 3.51698 3.74583 3.93042 3.97900 4.02348 4.13686 4.28454 4.36823 4.40376 4.47019 4.54314 4.55396 4.61689 4.66280 4.71750 4.72530 4.77630 4.82376 4.87757 4.89497 4.98831 5.00259 5.08703 5.12574 5.16498 5.19113 5.20790 5.28100 5.71915 5.75659 5.89786 6.14808 6.23382 6.33469 6.53800 7.21319 7.38707 8.63315 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004786 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.040170 B = 5849.597603 C = 6291.601406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.144 4.144 3 C 0.155 3.845 4 H 0.130 0.870 5 C -0.165 4.165 6 N -0.612 5.612 7 C 0.101 3.899 8 C -0.107 4.107 9 C -0.118 4.118 10 C -0.086 4.086 11 C 0.055 3.945 12 N -0.522 5.522 13 C 0.198 3.802 14 C -0.597 4.597 15 H 0.058 0.942 16 C -0.044 4.044 17 N -0.939 5.939 18 Si 1.132 2.868 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.274 1.274 22 C 0.063 3.937 23 C 0.518 3.482 24 O -0.573 6.573 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.002 0.998 40 H 0.074 0.926 41 H -0.013 1.013 42 H -0.053 1.053 43 H 0.247 0.753 44 H 0.104 0.896 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 15.450 19.628 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.054 3.946 4 H 0.148 0.852 5 C -0.223 4.223 6 N -0.346 5.346 7 C -0.020 4.020 8 C -0.144 4.144 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.073 4.073 12 N -0.246 5.246 13 C 0.071 3.929 14 C -0.635 4.635 15 H 0.076 0.924 16 C -0.240 4.240 17 N -0.577 5.577 18 Si 0.952 3.048 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.199 1.199 22 C -0.065 4.065 23 C 0.306 3.694 24 O -0.452 6.452 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.020 0.980 40 H 0.092 0.908 41 H 0.005 0.995 42 H -0.035 1.035 43 H 0.057 0.943 44 H 0.122 0.878 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.910 14.308 18.061 24.055 hybrid contribution -0.179 -0.777 1.594 1.782 sum -7.089 13.531 19.655 24.894 Atomic orbital electron populations 1.21668 0.94251 1.01663 1.02206 1.21947 0.97530 0.96865 1.01840 1.21172 0.94796 0.93081 0.85573 0.85226 1.22151 0.95710 1.02348 1.02098 1.48685 1.51158 1.29723 1.05006 1.22498 0.95048 0.86711 0.97751 1.22629 0.96302 1.02416 0.93086 1.21807 0.99042 0.96818 0.94564 1.22537 0.96957 0.97511 0.95420 1.22905 0.92276 0.95320 0.96828 1.63744 1.11423 1.15933 1.33458 1.19601 0.92807 0.86446 0.94058 1.22339 1.34640 0.95638 1.10894 0.92415 1.27680 0.98494 0.91624 1.06234 1.70864 1.38907 1.25737 1.22155 0.82781 0.74546 0.76539 0.70956 1.18935 1.20562 1.19894 1.22698 0.97287 0.97319 0.89223 1.20749 0.79479 0.83639 0.85526 1.90732 1.39304 1.30652 1.84482 0.93338 0.89778 0.94164 0.95444 0.89293 0.89480 0.95579 0.91605 0.87383 0.88680 0.85569 0.89019 0.86083 0.90223 0.97954 0.90753 0.99526 1.03529 0.94349 0.87810 0.96924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 71.98 0.71 -2.00 16 2 C -0.14 -3.34 5.36 30.59 0.16 -3.18 16 3 C 0.16 3.08 2.87 44.99 0.13 3.21 16 4 H 0.13 1.48 8.07 -2.39 -0.02 1.46 16 5 C -0.17 -3.70 9.20 71.98 0.66 -3.04 16 6 N -0.61 -14.00 2.30 -794.24 -1.82 -15.82 16 7 C 0.10 1.29 7.32 86.90 0.64 1.93 16 8 C -0.11 -1.68 6.15 31.32 0.19 -1.48 16 9 C -0.12 -3.46 0.66 -52.71 -0.03 -3.49 16 10 C -0.09 -2.48 6.02 31.62 0.19 -2.29 16 11 C 0.05 2.36 6.09 86.83 0.53 2.89 16 12 N -0.52 -25.26 5.17 -891.05 -4.60 -29.86 16 13 C 0.20 12.07 3.64 85.56 0.31 12.39 16 14 C -0.60 -37.70 8.81 25.60 0.23 -37.48 16 15 H 0.06 3.55 7.77 -2.91 -0.02 3.53 16 16 C -0.04 -2.79 5.46 84.65 0.46 -2.33 16 17 N -0.94 -63.83 13.65 21.45 0.29 -63.54 16 18 Si 1.13 54.21 29.90 68.60 2.05 56.27 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 C 0.06 2.46 5.95 86.16 0.51 2.97 16 23 C 0.52 17.85 5.95 87.43 0.52 18.37 16 24 O -0.57 -27.31 14.98 -3.03 -0.05 -27.35 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.88 7.75 -2.38 -0.02 0.86 16 28 H 0.03 0.93 6.69 -2.39 -0.02 0.91 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.02 0.83 6.77 -2.38 -0.02 0.82 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.13 1.23 7.62 -2.39 -0.02 1.21 16 36 H 0.09 1.34 7.90 -2.39 -0.02 1.32 16 37 H 0.12 2.59 7.76 -2.38 -0.02 2.57 16 38 H 0.08 2.11 8.00 -2.39 -0.02 2.09 16 39 H 0.00 0.10 7.62 -2.38 -0.02 0.08 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H -0.01 -0.86 7.91 -2.39 -0.02 -0.88 16 42 H -0.05 -3.66 7.71 -2.39 -0.02 -3.67 16 43 H 0.25 17.49 7.22 -92.71 -0.67 16.82 16 44 H 0.10 3.37 7.79 -2.39 -0.02 3.35 16 45 H 0.01 0.56 7.24 -2.39 -0.02 0.55 16 Total: -1.00 -88.66 349.56 2.11 -86.55 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.04 Total: 7.29 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.21 Total: -13.53 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -6.13 Total: -109.22 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 54.21 SS G_CDS: 2.05 Total: 56.27 kcal Total: -88.66 2.11 -86.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.840 kcal (2) G-P(sol) polarization free energy of solvation -88.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds