Wall clock time and date at job start Tue Mar 31 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99398 * 2 1 4 4 H 1.09006 * 109.47201 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46855 * 120.00315 * 3 2 1 6 6 C 1.52998 * 109.47122 * 294.99432 * 5 3 2 7 7 C 1.52999 * 109.46778 * 240.00068 * 3 2 1 8 8 C 1.50702 * 109.47229 * 65.00394 * 7 3 2 9 9 O 1.21277 * 119.99813 * 359.97438 * 8 7 3 10 10 N 1.34779 * 119.99761 * 179.97438 * 8 7 3 11 11 C 1.46502 * 119.99584 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47645 * 325.00135 * 11 10 8 13 13 C 1.52996 * 109.46882 * 85.00727 * 11 10 8 14 14 C 1.53000 * 109.46960 * 204.99961 * 11 10 8 15 15 C 1.53497 * 114.20787 * 180.02562 * 14 11 10 16 16 N 1.47062 * 87.98453 * 87.71861 * 15 14 11 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 H 1.08003 * 119.99756 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00573 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00165 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47757 * 54.99718 * 5 3 2 30 30 H 1.09003 * 109.46921 * 175.00241 * 5 3 2 31 31 H 1.09004 * 109.47086 * 60.00561 * 6 5 3 32 32 H 1.08999 * 109.47809 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47481 * 300.00604 * 6 5 3 34 34 H 1.08999 * 109.47356 * 305.00248 * 7 3 2 35 35 H 1.09001 * 109.47010 * 185.00013 * 7 3 2 36 36 H 0.96997 * 120.00244 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47365 * 179.97438 * 13 11 10 38 38 H 1.09010 * 109.47036 * 299.99304 * 13 11 10 39 39 H 1.08997 * 109.47848 * 59.99342 * 13 11 10 40 40 H 1.09001 * 113.28445 * 46.93871 * 14 11 10 41 41 H 1.09000 * 113.46436 * 332.93489 * 15 14 11 42 42 H 1.08997 * 113.51966 * 202.51274 * 15 14 11 43 43 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 45 45 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 2.0564 1.4308 2.4952 7 6 2.9430 1.3863 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3991 -2.3633 10 7 2.6300 1.5039 -3.7002 11 6 1.7809 1.5460 -4.8933 12 1 0.8971 0.9287 -4.7323 13 6 1.3524 2.9896 -5.1636 14 6 2.5634 1.0128 -6.0951 15 6 1.7717 1.0092 -7.4102 16 7 2.2298 2.3893 -7.6293 17 6 1.7612 3.4895 -8.2968 18 1 0.8248 3.4378 -8.8325 19 6 2.4929 4.6691 -8.2901 20 7 3.6343 4.7318 -7.6377 21 14 1.8576 6.1674 -9.2070 22 1 0.5624 5.8389 -9.8550 23 1 1.6633 7.2871 -8.2510 24 1 2.8422 6.5672 -10.2443 25 6 3.4156 2.0662 -6.8217 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 3.5905 0.5107 1.2951 30 1 3.5538 2.2880 1.2055 31 1 1.4455 0.5291 2.5389 32 1 2.6829 1.4890 3.3852 33 1 1.4088 2.3064 2.4494 34 1 3.5905 0.5107 -1.2952 35 1 3.5538 2.2880 -1.2057 36 1 3.5954 1.5291 -3.7908 37 1 0.7210 3.0211 -6.0516 38 1 0.7949 3.3695 -4.3074 39 1 2.2362 3.6069 -5.3246 40 1 3.0899 0.0812 -5.8876 41 1 0.6942 0.9267 -7.2679 42 1 2.1547 0.3026 -8.1465 43 1 4.1454 5.5562 -7.6327 44 1 4.2327 1.6382 -7.4024 45 1 3.7385 2.8845 -6.1782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276414591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:10 Heat of formation + Delta-G solvation = 28.535203 kcal Electronic energy + Delta-G solvation = -22584.133487 eV Core-core repulsion = 19410.848230 eV Total energy + Delta-G solvation = -3173.285257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.83788 -38.58906 -36.68170 -34.23127 -32.18554 -31.77527 -30.83024 -29.02209 -27.63979 -24.93667 -24.66776 -23.85189 -21.78644 -21.38032 -20.00164 -19.49249 -18.46209 -16.81877 -16.53876 -15.64458 -15.43315 -14.90578 -14.81744 -14.55712 -14.25144 -13.95157 -13.76901 -13.27433 -13.06772 -12.58976 -12.32590 -12.20652 -11.97030 -11.66474 -11.35857 -11.28440 -11.12766 -11.01729 -10.95346 -10.87135 -10.75055 -10.52425 -10.51900 -10.27782 -9.86854 -9.68382 -9.56168 -9.14266 -9.01588 -8.72891 -8.48985 -6.81502 -5.77117 -3.08114 2.49980 3.04149 3.38852 3.45097 3.46745 3.56840 4.46436 4.69637 4.74195 4.89204 5.15806 5.19388 5.29999 5.32533 5.36332 5.41388 5.44122 5.47112 5.60259 5.69715 5.78983 5.80901 5.84970 6.00665 6.01068 6.11538 6.17115 6.24967 6.35970 6.48456 6.55110 6.66736 6.77362 6.79615 6.85865 6.99680 7.10100 7.26278 7.31243 7.52064 7.65273 7.96330 7.98814 8.65259 9.04395 9.70956 10.65115 11.40203 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.003622 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.227244 B = 7729.582422 C = 8060.208017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.509 3.491 9 O -0.539 6.539 10 N -0.722 5.722 11 C 0.177 3.823 12 H 0.073 0.927 13 C -0.146 4.146 14 C -0.160 4.160 15 C 0.126 3.874 16 N -0.604 5.604 17 C -0.212 4.212 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.292 1.292 25 C 0.158 3.842 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.397 0.603 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.252 0.748 44 H 0.022 0.978 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -8.980 15.991 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.295 3.705 9 O -0.417 6.417 10 N -0.372 5.372 11 C 0.073 3.927 12 H 0.091 0.909 13 C -0.204 4.204 14 C -0.180 4.180 15 C -0.001 4.001 16 N -0.330 5.330 17 C -0.339 4.339 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.032 3.968 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.150 -8.642 15.925 18.119 hybrid contribution 0.407 0.750 -0.893 1.235 sum 0.257 -7.892 15.032 16.980 Atomic orbital electron populations 1.23674 0.95954 1.01195 0.99311 1.22605 0.95957 0.97013 1.01228 1.20142 0.96586 0.97035 0.92509 0.90098 1.21542 0.97867 1.01895 0.94077 1.21759 0.99824 1.02121 0.97110 1.21723 0.98745 1.04094 0.93040 1.20540 0.89171 0.76210 0.84619 1.90680 1.14783 1.49578 1.86610 1.46201 1.10435 1.74541 1.06046 1.20506 0.92111 0.98276 0.81798 0.90852 1.22143 1.03145 0.94649 1.00426 1.23370 1.00547 0.99427 0.94668 1.22345 0.97106 0.88511 0.92152 1.45658 1.21426 1.05323 1.60600 1.18919 1.03211 0.86921 1.24855 0.90253 1.24715 0.96876 0.97737 1.00866 1.69810 1.14502 1.26330 1.45897 0.86115 0.77855 0.83141 0.79097 1.20510 1.21738 1.21887 1.22199 0.89686 0.93466 0.91434 0.89407 0.88642 0.88274 0.91936 0.91820 0.92453 0.93056 0.92814 0.89211 0.88947 0.77018 0.89848 0.95534 0.90610 0.91423 0.94106 0.94868 0.93835 0.96074 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 13.22 29.01 0.38 -1.60 16 2 C -0.15 -1.70 6.76 -36.02 -0.24 -1.94 16 3 C -0.04 -0.47 1.82 -91.77 -0.17 -0.64 16 4 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 5 C -0.12 -0.98 5.39 -26.74 -0.14 -1.12 16 6 C -0.15 -1.23 9.73 37.16 0.36 -0.87 16 7 C -0.14 -1.46 5.16 -27.88 -0.14 -1.60 16 8 C 0.51 7.60 7.54 -10.98 -0.08 7.52 16 9 O -0.54 -9.86 13.83 5.56 0.08 -9.79 16 10 N -0.72 -10.87 5.08 -53.81 -0.27 -11.15 16 11 C 0.18 3.18 2.76 -67.93 -0.19 2.99 16 12 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.15 -3.08 8.07 37.16 0.30 -2.78 16 14 C -0.16 -2.88 4.24 -89.97 -0.38 -3.26 16 15 C 0.13 2.52 7.85 -8.51 -0.07 2.45 16 16 N -0.60 -14.70 2.18 -184.61 -0.40 -15.11 16 17 C -0.21 -5.72 9.60 -15.06 -0.14 -5.86 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.13 11.50 55.49 0.64 -25.49 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 C 0.16 3.49 6.41 -8.37 -0.05 3.43 16 26 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.10 1.24 7.83 -52.49 -0.41 0.83 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.40 5.13 8.60 -40.82 -0.35 4.78 16 37 H 0.08 1.95 5.95 -51.93 -0.31 1.64 16 38 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.08 1.80 6.33 -51.93 -0.33 1.47 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.84 5.72 -51.93 -0.30 1.55 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -30.39 356.30 -8.19 -38.58 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.91 Total: 4.22 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.67 Total: -3.52 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.04 Total: -51.75 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.39 -8.19 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276414591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.118 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds