Wall clock time and date at job start Tue Mar 31 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99398 * 2 1 4 4 H 1.09006 * 109.47201 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46855 * 120.00315 * 3 2 1 6 6 C 1.52998 * 109.47122 * 294.99432 * 5 3 2 7 7 C 1.52999 * 109.46778 * 240.00068 * 3 2 1 8 8 C 1.50702 * 109.47229 * 65.00394 * 7 3 2 9 9 O 1.21277 * 119.99813 * 359.97438 * 8 7 3 10 10 N 1.34779 * 119.99761 * 179.97438 * 8 7 3 11 11 C 1.46502 * 119.99584 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47645 * 325.00135 * 11 10 8 13 13 C 1.52996 * 109.46882 * 85.00727 * 11 10 8 14 14 C 1.53000 * 109.46960 * 204.99961 * 11 10 8 15 15 C 1.53497 * 114.20787 * 180.02562 * 14 11 10 16 16 N 1.47062 * 87.98453 * 87.71861 * 15 14 11 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 H 1.08003 * 119.99756 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00573 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00165 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47757 * 54.99718 * 5 3 2 30 30 H 1.09003 * 109.46921 * 175.00241 * 5 3 2 31 31 H 1.09004 * 109.47086 * 60.00561 * 6 5 3 32 32 H 1.08999 * 109.47809 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47481 * 300.00604 * 6 5 3 34 34 H 1.08999 * 109.47356 * 305.00248 * 7 3 2 35 35 H 1.09001 * 109.47010 * 185.00013 * 7 3 2 36 36 H 0.96997 * 120.00244 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47365 * 179.97438 * 13 11 10 38 38 H 1.09010 * 109.47036 * 299.99304 * 13 11 10 39 39 H 1.08997 * 109.47848 * 59.99342 * 13 11 10 40 40 H 1.09001 * 113.28445 * 46.93871 * 14 11 10 41 41 H 1.09000 * 113.46436 * 332.93489 * 15 14 11 42 42 H 1.08997 * 113.51966 * 202.51274 * 15 14 11 43 43 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 44 44 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 45 45 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 2.0564 1.4308 2.4952 7 6 2.9430 1.3863 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3991 -2.3633 10 7 2.6300 1.5039 -3.7002 11 6 1.7809 1.5460 -4.8933 12 1 0.8971 0.9287 -4.7323 13 6 1.3524 2.9896 -5.1636 14 6 2.5634 1.0128 -6.0951 15 6 1.7717 1.0092 -7.4102 16 7 2.2298 2.3893 -7.6293 17 6 1.7612 3.4895 -8.2968 18 1 0.8248 3.4378 -8.8325 19 6 2.4929 4.6691 -8.2901 20 7 3.6343 4.7318 -7.6377 21 14 1.8576 6.1674 -9.2070 22 1 0.5624 5.8389 -9.8550 23 1 1.6633 7.2871 -8.2510 24 1 2.8422 6.5672 -10.2443 25 6 3.4156 2.0662 -6.8217 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 3.5905 0.5107 1.2951 30 1 3.5538 2.2880 1.2055 31 1 1.4455 0.5291 2.5389 32 1 2.6829 1.4890 3.3852 33 1 1.4088 2.3064 2.4494 34 1 3.5905 0.5107 -1.2952 35 1 3.5538 2.2880 -1.2057 36 1 3.5954 1.5291 -3.7908 37 1 0.7210 3.0211 -6.0516 38 1 0.7949 3.3695 -4.3074 39 1 2.2362 3.6069 -5.3246 40 1 3.0899 0.0812 -5.8876 41 1 0.6942 0.9267 -7.2679 42 1 2.1547 0.3026 -8.1465 43 1 4.1454 5.5562 -7.6327 44 1 4.2327 1.6382 -7.4024 45 1 3.7385 2.8845 -6.1782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276414591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:09 Heat of formation + Delta-G solvation = 11.330488 kcal Electronic energy + Delta-G solvation = -22584.879539 eV Core-core repulsion = 19410.848230 eV Total energy + Delta-G solvation = -3174.031310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19704 -40.05100 -37.62842 -35.67552 -34.13707 -32.57266 -32.00469 -30.32315 -29.51154 -26.41361 -26.15728 -25.32987 -23.13164 -22.44562 -21.21429 -20.44278 -20.00087 -18.67277 -17.77062 -17.04803 -16.85004 -16.41110 -16.17870 -15.72697 -15.51173 -15.33658 -14.75049 -14.46822 -14.45734 -14.08834 -13.70223 -13.50358 -13.04814 -12.96877 -12.91829 -12.76849 -12.71498 -12.53737 -12.34659 -12.12442 -12.00292 -11.98263 -11.69141 -11.63561 -11.46276 -11.30976 -10.96185 -10.79225 -10.63176 -10.02145 -9.80999 -8.76790 -7.84995 -5.14693 1.45248 1.46782 1.55036 1.59963 1.87387 2.36308 2.49821 3.37203 3.57233 3.73769 3.88088 3.90540 3.97674 4.01706 4.40203 4.42854 4.46770 4.50351 4.58686 4.66505 4.72928 4.74582 4.87052 4.88349 4.93373 5.04630 5.05277 5.10613 5.11774 5.14113 5.21916 5.23188 5.31416 5.43660 5.50545 5.56536 5.60199 5.75116 5.82254 5.88111 6.01439 6.12459 6.78679 6.98738 7.47905 7.66976 8.68307 9.31945 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.003622 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.227244 B = 7729.582422 C = 8060.208017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C -0.045 4.045 4 H 0.054 0.946 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.576 6.576 10 N -0.716 5.716 11 C 0.187 3.813 12 H 0.071 0.929 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.122 3.878 16 N -0.631 5.631 17 C -0.214 4.214 18 H 0.076 0.924 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.296 1.296 24 H -0.294 1.294 25 C 0.158 3.842 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.410 0.590 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.245 0.755 44 H 0.017 0.983 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -10.595 16.943 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.162 4.162 3 C -0.064 4.064 4 H 0.073 0.927 5 C -0.148 4.148 6 C -0.209 4.209 7 C -0.167 4.167 8 C 0.292 3.708 9 O -0.455 6.455 10 N -0.367 5.367 11 C 0.082 3.918 12 H 0.089 0.911 13 C -0.185 4.185 14 C -0.147 4.147 15 C -0.003 4.003 16 N -0.357 5.357 17 C -0.343 4.343 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.793 3.207 22 H -0.195 1.195 23 H -0.223 1.223 24 H -0.222 1.222 25 C 0.032 3.968 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.246 0.754 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.922 -10.288 16.884 19.793 hybrid contribution 0.027 1.224 -1.172 1.694 sum 0.948 -9.064 15.712 18.164 Atomic orbital electron populations 1.23681 0.96614 1.00778 1.01042 1.22842 0.95760 0.97981 0.99645 1.20150 0.96548 0.95803 0.93852 0.92741 1.21514 0.97556 1.03140 0.92560 1.21765 0.99903 1.01449 0.97796 1.21766 0.98250 1.06402 0.90283 1.21351 0.89216 0.74836 0.85434 1.90679 1.16710 1.51046 1.87100 1.46074 1.10842 1.74512 1.05314 1.20185 0.92671 0.95720 0.83211 0.91142 1.21894 1.01126 0.96667 0.98814 1.23123 0.98698 0.99412 0.93419 1.22545 0.97773 0.86522 0.93509 1.45917 1.22656 1.06560 1.60575 1.19150 1.02981 0.88142 1.23987 0.90576 1.25356 0.97460 1.00036 1.02252 1.69956 1.15490 1.26387 1.47375 0.85231 0.77583 0.80135 0.77769 1.19491 1.22310 1.22178 1.22162 0.89522 0.93867 0.91243 0.88542 0.90558 0.86486 0.90265 0.90883 0.92969 0.91668 0.93769 0.86133 0.87095 0.75446 0.92383 0.96325 0.93426 0.87465 0.93689 0.93088 0.94562 0.96539 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 13.22 67.78 0.90 -3.51 16 2 C -0.14 -3.02 6.76 25.64 0.17 -2.85 16 3 C -0.04 -0.87 1.82 -11.54 -0.02 -0.89 16 4 H 0.05 1.36 7.60 -2.38 -0.02 1.34 16 5 C -0.11 -1.55 5.39 30.59 0.16 -1.38 16 6 C -0.15 -2.21 9.73 71.98 0.70 -1.51 16 7 C -0.13 -2.34 5.16 29.85 0.15 -2.19 16 8 C 0.50 14.14 7.54 87.66 0.66 14.80 16 9 O -0.58 -20.76 13.83 -3.02 -0.04 -20.80 16 10 N -0.72 -20.11 5.08 -442.55 -2.25 -22.36 16 11 C 0.19 6.49 2.76 44.99 0.12 6.61 16 12 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 13 C -0.13 -5.44 8.07 71.98 0.58 -4.86 16 14 C -0.13 -4.27 4.24 -10.37 -0.04 -4.32 16 15 C 0.12 4.69 7.85 83.18 0.65 5.34 16 16 N -0.63 -30.61 2.18 -737.98 -1.61 -32.22 16 17 C -0.21 -11.67 9.60 84.03 0.81 -10.86 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 19 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.94 -54.70 11.50 21.65 0.25 -54.45 16 21 Si 0.96 45.68 29.55 68.60 2.03 47.71 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 C 0.16 6.86 6.41 83.27 0.53 7.39 16 26 H 0.10 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.08 2.08 7.83 -2.91 -0.02 2.06 16 28 H 0.12 2.03 8.06 -2.92 -0.02 2.01 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.81 7.38 -2.39 -0.02 0.79 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 9.47 8.60 -92.71 -0.80 8.67 16 37 H 0.06 2.76 5.95 -2.39 -0.01 2.74 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.05 2.31 6.33 -2.39 -0.02 2.29 16 40 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 2.52 5.72 -2.39 -0.01 2.51 16 Total: -1.00 -67.20 356.30 4.38 -62.83 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.15 Total: 20.25 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.85 Total: -0.96 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.61 Total: -109.02 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.04 Total: -20.80 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.20 4.38 -62.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276414591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.156 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds