Wall clock time and date at job start Tue Mar 31 2020 01:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00118 * 2 1 4 4 H 1.09003 * 109.47193 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47170 * 240.00369 * 3 2 1 6 6 C 1.52992 * 109.47235 * 64.99741 * 5 3 2 7 7 C 1.53000 * 109.47299 * 120.00113 * 3 2 1 8 8 C 1.50708 * 109.46935 * 294.99899 * 7 3 2 9 9 O 1.21278 * 119.99795 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99771 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99741 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47131 * 35.00703 * 11 10 8 13 13 C 1.53003 * 109.47103 * 275.00497 * 11 10 8 14 14 C 1.52995 * 109.46852 * 155.00429 * 11 10 8 15 15 C 1.53945 * 113.74455 * 276.67427 * 14 11 10 16 16 N 1.47582 * 86.11941 * 222.05042 * 15 14 11 17 17 C 1.36935 * 134.49007 * 204.63920 * 16 15 14 18 18 H 1.08005 * 120.00023 * 173.47932 * 17 16 15 19 19 C 1.38812 * 120.00183 * 353.48308 * 17 16 15 20 20 N 1.31619 * 120.00104 * 5.06627 * 19 17 16 21 21 Si 1.86806 * 119.99790 * 185.06299 * 19 17 16 22 22 H 1.48501 * 109.46991 * 94.98968 * 21 19 17 23 23 H 1.48500 * 109.46873 * 214.98864 * 21 19 17 24 24 H 1.48496 * 109.47101 * 334.98497 * 21 19 17 25 25 C 1.47585 * 91.01361 * 24.63880 * 16 15 14 26 26 H 1.07997 * 119.99985 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99734 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00201 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47153 * 185.00359 * 5 3 2 30 30 H 1.09002 * 109.46891 * 304.98999 * 5 3 2 31 31 H 1.08996 * 109.47569 * 299.99820 * 6 5 3 32 32 H 1.08993 * 109.47243 * 60.00403 * 6 5 3 33 33 H 1.09006 * 109.46719 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.46831 * 54.99923 * 7 3 2 35 35 H 1.09000 * 109.47245 * 175.00485 * 7 3 2 36 36 H 0.96998 * 120.00068 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.46737 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47295 * 300.00105 * 13 11 10 39 39 H 1.08995 * 109.47186 * 60.00466 * 13 11 10 40 40 H 1.08997 * 112.94814 * 48.41237 * 14 11 10 41 41 H 1.09001 * 113.76431 * 336.35277 * 15 14 11 42 42 H 1.09000 * 113.77032 * 107.74426 * 15 14 11 43 43 H 0.97001 * 119.99908 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.76584 * 221.06032 * 25 16 15 45 45 H 1.08998 * 113.86742 * 89.67474 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 6 2.0564 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3990 2.3633 10 7 2.6302 1.5027 3.7002 11 6 1.7812 1.5448 4.8933 12 1 0.8970 0.9282 4.7321 13 6 1.3535 2.9887 5.1643 14 6 2.5633 1.0106 6.0948 15 6 2.5547 -0.5247 6.2070 16 7 2.3522 -0.3177 7.6542 17 6 2.6106 -1.0604 8.7752 18 1 2.4577 -0.6311 9.7544 19 6 3.0691 -2.3649 8.6532 20 7 3.3506 -2.8550 7.4645 21 14 3.2867 -3.4247 10.1760 22 1 2.0685 -4.2479 10.3844 23 1 4.4612 -4.3153 9.9955 24 1 3.5036 -2.5532 11.3587 25 6 1.7593 1.0111 7.4077 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5541 2.2878 -1.2056 30 1 3.5907 0.5105 -1.2951 31 1 1.4455 0.5290 -2.5390 32 1 1.4090 2.3063 -2.4494 33 1 2.6831 1.4889 -3.3852 34 1 3.5906 0.5104 1.2951 35 1 3.5540 2.2878 1.2056 36 1 3.5956 1.5271 3.7908 37 1 0.7215 3.0199 6.0518 38 1 2.2377 3.6054 5.3255 39 1 0.7963 3.3693 4.3083 40 1 3.5549 1.4535 6.1875 41 1 1.7085 -0.9969 5.7081 42 1 3.5093 -0.9887 5.9589 43 1 3.6714 -3.7665 7.3793 44 1 2.0788 1.7734 8.1182 45 1 0.6793 0.9920 7.2614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276414592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:13 Heat of formation + Delta-G solvation = 15.080465 kcal Electronic energy + Delta-G solvation = -22185.188345 eV Core-core repulsion = 19011.319646 eV Total energy + Delta-G solvation = -3173.868699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85150 -38.23233 -36.72139 -34.61795 -32.23352 -31.77294 -31.08356 -29.53135 -27.49108 -25.24352 -24.51785 -23.76320 -21.78205 -21.24326 -20.20629 -19.56399 -18.91670 -16.83988 -16.57938 -16.03844 -15.49594 -14.87692 -14.78129 -14.59794 -14.05778 -13.82766 -13.74476 -13.38054 -13.23522 -12.86924 -12.43008 -12.25721 -12.15145 -11.84757 -11.62767 -11.45188 -11.30785 -11.26703 -11.23322 -10.90765 -10.88856 -10.71612 -10.52822 -10.31208 -9.93336 -9.74535 -9.59560 -9.38440 -9.03171 -8.77642 -8.65623 -6.84476 -5.76897 -3.07989 2.51877 2.93204 3.39539 3.43273 3.45296 3.46649 4.46653 4.66906 4.69505 4.82462 5.08141 5.14517 5.19138 5.29477 5.32129 5.34263 5.42346 5.46344 5.56071 5.61518 5.70764 5.76360 5.78229 5.81846 5.86627 5.97771 6.00619 6.08186 6.09967 6.22583 6.29455 6.40428 6.44835 6.63487 6.72160 6.81077 6.89739 7.00549 7.25417 7.38092 7.58342 7.80827 7.99411 8.52687 9.05977 9.72032 10.62847 11.40749 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.003406 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.604271 B = 8219.146513 C = 8826.537388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.043 4.043 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.537 6.537 10 N -0.722 5.722 11 C 0.151 3.849 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.147 4.147 15 C 0.175 3.825 16 N -0.613 5.613 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.129 3.871 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 11.064 -16.542 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.061 4.061 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.177 4.177 8 C 0.296 3.704 9 O -0.414 6.414 10 N -0.372 5.372 11 C 0.046 3.954 12 H 0.104 0.896 13 C -0.215 4.215 14 C -0.167 4.167 15 C 0.049 3.951 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.002 3.998 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.468 10.749 -16.423 19.633 hybrid contribution 0.531 -0.797 1.000 1.385 sum 0.063 9.952 -15.423 18.355 Atomic orbital electron populations 1.23668 0.95937 1.01191 0.99269 1.22629 0.96013 0.97098 1.01235 1.20131 0.96492 0.97045 0.92469 0.90239 1.21547 0.97879 1.01899 0.94084 1.21756 0.99817 1.02133 0.97108 1.21732 0.98785 1.04184 0.92956 1.20593 0.89199 0.75937 0.84657 1.90688 1.14799 1.49256 1.86634 1.46142 1.10325 1.74931 1.05850 1.21031 0.94223 0.96356 0.83761 0.89641 1.22121 1.01151 0.96585 1.01672 1.23816 0.99096 1.00324 0.93427 1.22183 0.99713 0.88874 0.84318 1.45948 1.69355 1.16296 1.02303 1.19032 1.37843 0.93502 0.84754 0.90252 1.24824 1.01983 0.96806 0.96822 1.69839 1.50007 1.15654 1.21097 0.86141 0.77301 0.80526 0.82081 1.21634 1.21720 1.20560 1.22505 0.95283 0.89378 0.92597 0.88767 0.89277 0.88060 0.91936 0.91801 0.92357 0.92896 0.93043 0.88846 0.89100 0.76890 0.91600 0.92891 0.92895 0.89535 0.95548 0.91547 0.93684 0.93878 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 13.22 29.01 0.38 -1.64 16 2 C -0.15 -1.77 6.76 -36.03 -0.24 -2.02 16 3 C -0.04 -0.43 1.82 -91.77 -0.17 -0.60 16 4 H 0.08 0.91 7.60 -51.93 -0.39 0.51 16 5 C -0.12 -0.93 5.39 -26.74 -0.14 -1.07 16 6 C -0.15 -1.17 9.73 37.15 0.36 -0.81 16 7 C -0.14 -1.36 5.16 -27.88 -0.14 -1.50 16 8 C 0.51 7.02 7.54 -10.98 -0.08 6.93 16 9 O -0.54 -9.19 13.83 5.56 0.08 -9.11 16 10 N -0.72 -9.65 5.08 -53.80 -0.27 -9.92 16 11 C 0.15 2.36 2.42 -67.93 -0.16 2.19 16 12 H 0.09 1.57 7.37 -51.93 -0.38 1.19 16 13 C -0.16 -2.13 9.29 37.16 0.35 -1.78 16 14 C -0.15 -2.64 3.50 -89.70 -0.31 -2.96 16 15 C 0.17 4.11 6.98 -2.97 -0.02 4.09 16 16 N -0.61 -15.92 3.70 -177.89 -0.66 -16.58 16 17 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.56 11.51 55.49 0.64 -26.92 16 21 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.63 7.56 -2.97 -0.02 2.60 16 26 H 0.09 1.20 7.83 -52.49 -0.41 0.79 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.10 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.40 4.43 8.60 -40.82 -0.35 4.07 16 37 H 0.07 0.88 7.43 -51.93 -0.39 0.49 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 42 H 0.07 1.71 7.35 -51.93 -0.38 1.33 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -32.71 363.81 -8.37 -41.07 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.14 Total: 2.07 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.47 Total: -3.41 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.29 Total: -53.42 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.71 -8.37 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276414592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.155 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds