Wall clock time and date at job start Tue Mar 31 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00118 * 2 1 4 4 H 1.09003 * 109.47193 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47170 * 240.00369 * 3 2 1 6 6 C 1.52992 * 109.47235 * 64.99741 * 5 3 2 7 7 C 1.53000 * 109.47299 * 120.00113 * 3 2 1 8 8 C 1.50708 * 109.46935 * 294.99899 * 7 3 2 9 9 O 1.21278 * 119.99795 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99771 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99741 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47131 * 35.00703 * 11 10 8 13 13 C 1.53003 * 109.47103 * 275.00497 * 11 10 8 14 14 C 1.52995 * 109.46852 * 155.00429 * 11 10 8 15 15 C 1.53945 * 113.74455 * 276.67427 * 14 11 10 16 16 N 1.47582 * 86.11941 * 222.05042 * 15 14 11 17 17 C 1.36935 * 134.49007 * 204.63920 * 16 15 14 18 18 H 1.08005 * 120.00023 * 173.47932 * 17 16 15 19 19 C 1.38812 * 120.00183 * 353.48308 * 17 16 15 20 20 N 1.31619 * 120.00104 * 5.06627 * 19 17 16 21 21 Si 1.86806 * 119.99790 * 185.06299 * 19 17 16 22 22 H 1.48501 * 109.46991 * 94.98968 * 21 19 17 23 23 H 1.48500 * 109.46873 * 214.98864 * 21 19 17 24 24 H 1.48496 * 109.47101 * 334.98497 * 21 19 17 25 25 C 1.47585 * 91.01361 * 24.63880 * 16 15 14 26 26 H 1.07997 * 119.99985 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99734 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00201 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47153 * 185.00359 * 5 3 2 30 30 H 1.09002 * 109.46891 * 304.98999 * 5 3 2 31 31 H 1.08996 * 109.47569 * 299.99820 * 6 5 3 32 32 H 1.08993 * 109.47243 * 60.00403 * 6 5 3 33 33 H 1.09006 * 109.46719 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.46831 * 54.99923 * 7 3 2 35 35 H 1.09000 * 109.47245 * 175.00485 * 7 3 2 36 36 H 0.96998 * 120.00068 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.46737 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47295 * 300.00105 * 13 11 10 39 39 H 1.08995 * 109.47186 * 60.00466 * 13 11 10 40 40 H 1.08997 * 112.94814 * 48.41237 * 14 11 10 41 41 H 1.09001 * 113.76431 * 336.35277 * 15 14 11 42 42 H 1.09000 * 113.77032 * 107.74426 * 15 14 11 43 43 H 0.97001 * 119.99908 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.76584 * 221.06032 * 25 16 15 45 45 H 1.08998 * 113.86742 * 89.67474 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 6 2.0564 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3990 2.3633 10 7 2.6302 1.5027 3.7002 11 6 1.7812 1.5448 4.8933 12 1 0.8970 0.9282 4.7321 13 6 1.3535 2.9887 5.1643 14 6 2.5633 1.0106 6.0948 15 6 2.5547 -0.5247 6.2070 16 7 2.3522 -0.3177 7.6542 17 6 2.6106 -1.0604 8.7752 18 1 2.4577 -0.6311 9.7544 19 6 3.0691 -2.3649 8.6532 20 7 3.3506 -2.8550 7.4645 21 14 3.2867 -3.4247 10.1760 22 1 2.0685 -4.2479 10.3844 23 1 4.4612 -4.3153 9.9955 24 1 3.5036 -2.5532 11.3587 25 6 1.7593 1.0111 7.4077 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5541 2.2878 -1.2056 30 1 3.5907 0.5105 -1.2951 31 1 1.4455 0.5290 -2.5390 32 1 1.4090 2.3063 -2.4494 33 1 2.6831 1.4889 -3.3852 34 1 3.5906 0.5104 1.2951 35 1 3.5540 2.2878 1.2056 36 1 3.5956 1.5271 3.7908 37 1 0.7215 3.0199 6.0518 38 1 2.2377 3.6054 5.3255 39 1 0.7963 3.3693 4.3083 40 1 3.5549 1.4535 6.1875 41 1 1.7085 -0.9969 5.7081 42 1 3.5093 -0.9887 5.9589 43 1 3.6714 -3.7665 7.3793 44 1 2.0788 1.7734 8.1182 45 1 0.6793 0.9920 7.2614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276414592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:12 Heat of formation + Delta-G solvation = -5.112798 kcal Electronic energy + Delta-G solvation = -22186.063990 eV Core-core repulsion = 19011.319646 eV Total energy + Delta-G solvation = -3174.744344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03382 -39.77521 -37.67118 -35.97872 -34.17477 -32.60548 -32.26352 -30.57463 -29.32747 -26.70536 -25.85752 -25.30406 -22.88843 -22.43339 -21.37676 -20.65869 -20.27494 -18.76123 -17.80148 -17.31167 -16.90583 -16.40711 -15.85237 -15.71237 -15.49556 -15.09298 -14.79281 -14.67533 -14.44046 -14.10350 -13.86971 -13.43016 -13.28234 -13.09594 -12.97220 -12.89460 -12.79382 -12.67923 -12.52274 -12.11800 -12.01592 -11.96522 -11.72375 -11.63637 -11.47192 -11.32604 -11.22813 -10.88700 -10.70057 -10.03771 -9.82877 -8.92078 -7.93244 -5.25912 1.43784 1.46283 1.54965 1.56878 1.86334 2.35872 2.46480 3.27361 3.39615 3.72090 3.87973 3.93056 3.96152 4.02128 4.32383 4.40493 4.43950 4.49037 4.55454 4.60816 4.65551 4.72353 4.74622 4.83632 4.86167 4.90800 5.02314 5.04948 5.09279 5.10818 5.17510 5.22165 5.24754 5.35172 5.43685 5.50122 5.51342 5.60511 5.72702 5.87425 5.92560 6.07424 6.75907 6.90616 7.47017 7.59403 8.56301 9.24332 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.003406 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.604271 B = 8219.146513 C = 8826.537388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C -0.041 4.041 4 H 0.065 0.935 5 C -0.111 4.111 6 C -0.152 4.152 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.575 6.575 10 N -0.717 5.717 11 C 0.161 3.839 12 H 0.053 0.947 13 C -0.147 4.147 14 C -0.108 4.108 15 C 0.172 3.828 16 N -0.645 5.645 17 C -0.237 4.237 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.264 1.264 25 C 0.128 3.872 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.000 1.000 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 12.776 -16.541 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.060 4.060 4 H 0.083 0.917 5 C -0.148 4.148 6 C -0.209 4.209 7 C -0.169 4.169 8 C 0.292 3.708 9 O -0.454 6.454 10 N -0.369 5.369 11 C 0.055 3.945 12 H 0.071 0.929 13 C -0.205 4.205 14 C -0.127 4.127 15 C 0.046 3.954 16 N -0.371 5.371 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.189 1.189 25 C 0.003 3.997 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.974 12.504 -16.420 20.662 hybrid contribution 0.041 -1.315 0.988 1.645 sum 1.015 11.189 -15.433 19.089 Atomic orbital electron populations 1.23676 0.96524 1.00846 1.00941 1.22885 0.95940 0.98238 0.99766 1.20138 0.96568 0.95412 0.93882 0.91691 1.21521 0.97549 1.03131 0.92597 1.21763 0.99916 1.01469 0.97776 1.21778 0.98270 1.06428 0.90377 1.21327 0.89193 0.74782 0.85547 1.90683 1.16715 1.50881 1.87160 1.46063 1.10876 1.74728 1.05216 1.20717 0.92920 0.97223 0.83646 0.92920 1.22021 1.02057 0.94811 1.01638 1.23441 0.99955 0.95807 0.93528 1.22057 0.97098 0.92631 0.83565 1.46389 1.70183 1.18116 1.02444 1.19462 1.36915 0.94121 0.86010 0.89703 1.25687 1.02486 0.98205 0.99779 1.70027 1.51398 1.15543 1.23168 0.85072 0.76713 0.78597 0.79062 1.21801 1.21929 1.18857 1.22693 0.95686 0.87244 0.94074 0.89608 0.89315 0.87687 0.90111 0.91074 0.93478 0.93178 0.91722 0.87429 0.85786 0.75257 0.91284 0.90698 0.93276 0.87575 0.98235 0.94344 0.94304 0.91724 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.71 13.22 67.78 0.90 -3.81 16 2 C -0.15 -3.49 6.76 25.64 0.17 -3.31 16 3 C -0.04 -0.78 1.82 -11.54 -0.02 -0.80 16 4 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16 5 C -0.11 -1.49 5.39 30.59 0.16 -1.33 16 6 C -0.15 -2.14 9.73 71.98 0.70 -1.44 16 7 C -0.13 -2.24 5.16 29.85 0.15 -2.08 16 8 C 0.50 13.24 7.54 87.66 0.66 13.90 16 9 O -0.58 -19.74 13.83 -3.02 -0.04 -19.78 16 10 N -0.72 -17.98 5.08 -442.53 -2.25 -20.23 16 11 C 0.16 4.83 2.42 44.99 0.11 4.94 16 12 H 0.05 1.97 7.37 -2.39 -0.02 1.95 16 13 C -0.15 -3.64 9.29 71.98 0.67 -2.97 16 14 C -0.11 -3.74 3.50 -10.14 -0.04 -3.78 16 15 C 0.17 8.29 6.98 86.48 0.60 8.89 16 16 N -0.64 -33.59 3.70 -716.71 -2.65 -36.24 16 17 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 18 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 20 N -0.95 -58.52 11.51 21.65 0.25 -58.27 16 21 Si 0.98 46.27 29.56 68.60 2.03 48.29 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 C 0.13 5.05 7.56 86.48 0.65 5.70 16 26 H 0.09 2.31 7.83 -2.91 -0.02 2.29 16 27 H 0.09 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.11 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.76 7.38 -2.39 -0.02 0.74 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.41 8.08 8.60 -92.71 -0.80 7.28 16 37 H 0.07 1.67 7.43 -2.38 -0.02 1.65 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 42 H 0.04 2.04 7.35 -2.39 -0.02 2.02 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.04 1.53 8.06 -2.39 -0.02 1.51 16 Total: -1.00 -72.73 363.81 3.57 -69.16 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.14 Total: 19.25 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 6.09 Total: -2.19 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -4.65 Total: -114.74 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.04 Total: -19.78 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.73 3.57 -69.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276414592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds