Wall clock time and date at job start Tue Mar 31 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 120.00339 * 2 1 4 4 H 1.09005 * 109.46655 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47241 * 240.00249 * 3 2 1 6 6 C 1.53001 * 109.47322 * 63.49435 * 5 3 2 7 7 C 1.52995 * 109.47571 * 119.99647 * 3 2 1 8 8 C 1.50693 * 109.47488 * 186.22964 * 7 3 2 9 9 O 1.21290 * 119.99958 * 6.26887 * 8 7 3 10 10 N 1.34780 * 120.00373 * 186.27388 * 8 7 3 11 11 C 1.46493 * 119.99642 * 4.95811 * 10 8 7 12 12 C 1.46498 * 119.99944 * 184.96069 * 10 8 7 13 13 C 1.52994 * 109.47393 * 265.85747 * 12 10 8 14 14 H 1.09000 * 112.73815 * 44.49619 * 13 12 10 15 15 C 1.53496 * 113.52197 * 273.70434 * 13 12 10 16 16 C 1.53757 * 83.25703 * 218.97185 * 15 13 12 17 17 N 1.47057 * 113.47186 * 175.23871 * 13 12 10 18 18 C 1.36939 * 136.05699 * 321.93056 * 17 13 12 19 19 H 1.08002 * 120.00357 * 30.81594 * 18 17 13 20 20 C 1.38814 * 119.99786 * 211.10236 * 18 17 13 21 21 N 1.31623 * 119.99645 * 188.63302 * 20 18 17 22 22 Si 1.86801 * 120.00355 * 8.62705 * 20 18 17 23 23 H 1.48501 * 109.46713 * 84.13474 * 22 20 18 24 24 H 1.48493 * 109.47470 * 204.13444 * 22 20 18 25 25 H 1.48502 * 109.47017 * 324.13844 * 22 20 18 26 26 H 1.07997 * 119.99929 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99759 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00120 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47312 * 183.49881 * 5 3 2 30 30 H 1.09000 * 109.46760 * 303.49841 * 5 3 2 31 31 H 1.09003 * 109.46902 * 300.00114 * 6 5 3 32 32 H 1.08997 * 109.47461 * 60.00021 * 6 5 3 33 33 H 1.08999 * 109.46986 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46860 * 66.22554 * 7 3 2 35 35 H 1.09002 * 109.46794 * 306.23296 * 7 3 2 36 36 H 1.09008 * 109.47400 * 270.00172 * 11 10 8 37 37 H 1.09002 * 109.47771 * 30.00364 * 11 10 8 38 38 H 1.08999 * 109.47277 * 150.00326 * 11 10 8 39 39 H 1.08998 * 109.46870 * 145.85553 * 12 10 8 40 40 H 1.09001 * 109.47341 * 25.85902 * 12 10 8 41 41 H 1.09004 * 114.20290 * 332.72637 * 15 13 12 42 42 H 1.09001 * 114.20928 * 105.35470 * 15 13 12 43 43 H 1.08996 * 113.46538 * 271.49796 * 16 15 13 44 44 H 1.09004 * 113.54878 * 140.98836 * 16 15 13 45 45 H 0.97002 * 119.99609 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0576 1.3930 -2.4969 7 6 2.9431 1.3862 1.2492 8 6 3.5783 2.7505 1.3287 9 8 3.2633 3.6132 0.5365 10 7 4.4966 3.0120 2.2800 11 6 4.9572 1.9413 3.1674 12 6 5.0339 4.3670 2.4266 13 6 6.3331 4.4896 1.6280 14 1 6.2604 4.0469 0.6346 15 6 7.5764 4.0403 2.4080 16 6 8.2284 5.2430 1.7062 17 7 6.8915 5.8500 1.6233 18 6 6.3883 7.1222 1.5624 19 1 5.4178 7.3398 1.9833 20 6 7.1232 8.1308 0.9544 21 7 6.7230 9.3816 1.0432 22 14 8.6800 7.7131 0.0103 23 1 8.3257 7.3071 -1.3735 24 1 9.5662 8.9037 -0.0347 25 1 9.3855 6.5962 0.6886 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 3.5346 2.3011 -1.2185 30 1 3.6092 0.5239 -1.2811 31 1 1.4662 0.4778 -2.5277 32 1 1.3915 2.2551 -2.4651 33 1 2.6843 1.4502 -3.3869 34 1 3.7218 0.6254 1.1953 35 1 2.3316 1.2179 2.1357 36 1 4.3198 1.9020 4.0508 37 1 4.9088 0.9876 2.6418 38 1 5.9858 2.1375 3.4700 39 1 5.2342 4.5664 3.4793 40 1 4.3077 5.0884 2.0520 41 1 7.4872 4.1441 3.4894 42 1 7.9722 3.0728 2.0993 43 1 8.6554 4.9988 0.7336 44 1 8.9182 5.7973 2.3428 45 1 7.2367 10.0864 0.6187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316599302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:38 Heat of formation + Delta-G solvation = 41.465029 kcal Electronic energy + Delta-G solvation = -22629.810860 eV Core-core repulsion = 19457.086282 eV Total energy + Delta-G solvation = -3172.724578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01497 -38.42520 -36.81114 -35.13695 -32.25114 -31.88458 -30.77272 -28.60138 -28.30628 -26.38424 -24.61492 -23.19272 -22.51951 -21.74898 -19.79497 -19.42948 -18.81568 -16.94552 -16.65119 -16.07661 -15.63736 -15.24279 -14.88640 -14.73752 -14.28924 -13.93554 -13.43022 -13.27189 -13.13047 -12.97273 -12.71348 -12.56880 -12.45645 -12.13550 -11.89237 -11.74868 -11.60896 -11.28615 -11.18751 -11.04723 -10.79541 -10.72911 -10.58133 -10.26302 -10.12173 -9.78623 -9.57227 -9.39513 -9.20982 -8.67247 -8.23605 -6.93309 -5.89957 -3.33804 2.10976 2.86215 3.22192 3.40640 3.47876 3.49658 4.51038 4.58700 4.64748 4.86657 4.95115 4.97011 5.08180 5.13186 5.23931 5.26700 5.32539 5.36200 5.42419 5.47830 5.62826 5.69264 5.70088 5.75111 5.85908 5.86575 5.92959 6.00661 6.10293 6.17577 6.28997 6.30360 6.35907 6.40181 6.48239 6.56728 6.59711 6.66006 6.70542 7.11544 7.46327 7.63469 8.38154 8.45057 8.75139 9.67205 10.43830 11.26719 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.004159 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.588776 B = 6731.037329 C = 7253.793511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.049 4.049 4 H 0.084 0.916 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.131 4.131 8 C 0.506 3.494 9 O -0.528 6.528 10 N -0.614 5.614 11 C 0.078 3.922 12 C 0.117 3.883 13 C 0.128 3.872 14 H 0.046 0.954 15 C -0.159 4.159 16 C 0.113 3.887 17 N -0.615 5.615 18 C -0.225 4.225 19 H 0.092 0.908 20 C 0.026 3.974 21 N -0.917 5.917 22 Si 0.865 3.135 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.244 1.244 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.050 0.950 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -22.585 2.226 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.160 4.160 3 C -0.067 4.067 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.205 4.205 7 C -0.171 4.171 8 C 0.294 3.706 9 O -0.404 6.404 10 N -0.348 5.348 11 C -0.065 4.065 12 C -0.006 4.006 13 C 0.021 3.979 14 H 0.064 0.936 15 C -0.197 4.197 16 C -0.012 4.012 17 N -0.343 5.343 18 C -0.352 4.352 19 H 0.110 0.890 20 C -0.173 4.173 21 N -0.560 5.560 22 Si 0.694 3.306 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.169 1.169 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.673 -21.673 1.758 22.745 hybrid contribution 0.914 -0.108 -0.668 1.137 sum -5.759 -21.781 1.090 22.556 Atomic orbital electron populations 1.23850 0.95972 1.01727 1.01626 1.22935 0.95899 0.98013 0.99165 1.20195 0.97088 0.95648 0.93804 0.89743 1.21595 0.97922 1.02733 0.93442 1.21726 0.99806 1.01494 0.97445 1.21722 0.99993 0.95353 1.00028 1.20644 0.79356 0.90127 0.80507 1.90744 1.62093 1.48129 1.39421 1.47911 1.41704 1.10977 1.34197 1.21792 1.00689 0.90248 0.93804 1.21734 0.96906 0.81635 1.00308 1.22487 0.91714 0.87788 0.95898 0.93606 1.23689 0.98865 0.97447 0.99743 1.22704 0.90330 0.91510 0.96656 1.46095 1.01639 1.00079 1.86445 1.18556 1.05044 0.80401 1.31180 0.89045 1.25324 0.98929 0.95435 0.97619 1.69740 1.40185 0.99084 1.47027 0.87187 0.84086 0.77940 0.81426 1.21319 1.22490 1.16903 0.88558 0.88686 0.87539 0.90086 0.92655 0.93069 0.92705 0.93060 0.89187 0.88992 0.92918 0.91439 0.90649 0.90664 0.89423 0.90081 0.92385 0.94541 0.93197 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 14.32 29.02 0.42 -1.20 16 2 C -0.14 -1.24 7.68 -36.02 -0.28 -1.52 16 3 C -0.05 -0.53 1.81 -91.77 -0.17 -0.70 16 4 H 0.08 1.10 7.46 -51.93 -0.39 0.71 16 5 C -0.12 -1.42 5.20 -26.73 -0.14 -1.56 16 6 C -0.15 -1.63 9.71 37.16 0.36 -1.27 16 7 C -0.13 -1.36 4.01 -27.89 -0.11 -1.47 16 8 C 0.51 7.59 7.23 -10.99 -0.08 7.51 16 9 O -0.53 -10.39 13.88 5.55 0.08 -10.31 16 10 N -0.61 -8.67 2.87 -181.58 -0.52 -9.19 16 11 C 0.08 0.73 10.22 59.84 0.61 1.34 16 12 C 0.12 2.10 5.36 -4.05 -0.02 2.08 16 13 C 0.13 2.56 4.30 -72.41 -0.31 2.25 16 14 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.16 -2.64 7.15 -26.08 -0.19 -2.83 16 16 C 0.11 2.39 5.37 -8.38 -0.04 2.34 16 17 N -0.61 -15.10 3.21 -176.86 -0.57 -15.67 16 18 C -0.23 -6.55 11.00 -15.06 -0.17 -6.72 16 19 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 20 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 21 N -0.92 -29.12 13.97 55.49 0.78 -28.35 16 22 Si 0.86 22.42 26.97 -169.99 -4.58 17.83 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.24 -5.73 3.96 56.52 0.22 -5.50 16 26 H 0.10 0.84 7.83 -52.49 -0.41 0.42 16 27 H 0.09 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.08 1.23 6.24 -51.93 -0.32 0.91 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.50 7.33 -51.93 -0.38 0.12 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.75 6.91 -51.93 -0.36 0.39 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.07 0.48 6.31 -51.93 -0.33 0.15 16 38 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 39 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 40 H 0.09 1.90 7.37 -51.93 -0.38 1.52 16 41 H 0.08 1.24 7.95 -51.93 -0.41 0.83 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.78 6.75 -51.93 -0.35 0.43 16 44 H 0.05 1.07 7.54 -51.93 -0.39 0.67 16 45 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -34.03 354.13 -7.74 -41.77 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.05 Total: -0.35 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.21 Total: -1.06 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.31 Total: -53.21 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.58 Total: 17.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.03 -7.74 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.235 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds