Wall clock time and date at job start Tue Mar 31 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 120.00339 * 2 1 4 4 H 1.09005 * 109.46655 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47241 * 240.00249 * 3 2 1 6 6 C 1.53001 * 109.47322 * 63.49435 * 5 3 2 7 7 C 1.52995 * 109.47571 * 119.99647 * 3 2 1 8 8 C 1.50693 * 109.47488 * 186.22964 * 7 3 2 9 9 O 1.21290 * 119.99958 * 6.26887 * 8 7 3 10 10 N 1.34780 * 120.00373 * 186.27388 * 8 7 3 11 11 C 1.46493 * 119.99642 * 4.95811 * 10 8 7 12 12 C 1.46498 * 119.99944 * 184.96069 * 10 8 7 13 13 C 1.52994 * 109.47393 * 265.85747 * 12 10 8 14 14 H 1.09000 * 112.73815 * 44.49619 * 13 12 10 15 15 C 1.53496 * 113.52197 * 273.70434 * 13 12 10 16 16 C 1.53757 * 83.25703 * 218.97185 * 15 13 12 17 17 N 1.47057 * 113.47186 * 175.23871 * 13 12 10 18 18 C 1.36939 * 136.05699 * 321.93056 * 17 13 12 19 19 H 1.08002 * 120.00357 * 30.81594 * 18 17 13 20 20 C 1.38814 * 119.99786 * 211.10236 * 18 17 13 21 21 N 1.31623 * 119.99645 * 188.63302 * 20 18 17 22 22 Si 1.86801 * 120.00355 * 8.62705 * 20 18 17 23 23 H 1.48501 * 109.46713 * 84.13474 * 22 20 18 24 24 H 1.48493 * 109.47470 * 204.13444 * 22 20 18 25 25 H 1.48502 * 109.47017 * 324.13844 * 22 20 18 26 26 H 1.07997 * 119.99929 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99759 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00120 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47312 * 183.49881 * 5 3 2 30 30 H 1.09000 * 109.46760 * 303.49841 * 5 3 2 31 31 H 1.09003 * 109.46902 * 300.00114 * 6 5 3 32 32 H 1.08997 * 109.47461 * 60.00021 * 6 5 3 33 33 H 1.08999 * 109.46986 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46860 * 66.22554 * 7 3 2 35 35 H 1.09002 * 109.46794 * 306.23296 * 7 3 2 36 36 H 1.09008 * 109.47400 * 270.00172 * 11 10 8 37 37 H 1.09002 * 109.47771 * 30.00364 * 11 10 8 38 38 H 1.08999 * 109.47277 * 150.00326 * 11 10 8 39 39 H 1.08998 * 109.46870 * 145.85553 * 12 10 8 40 40 H 1.09001 * 109.47341 * 25.85902 * 12 10 8 41 41 H 1.09004 * 114.20290 * 332.72637 * 15 13 12 42 42 H 1.09001 * 114.20928 * 105.35470 * 15 13 12 43 43 H 1.08996 * 113.46538 * 271.49796 * 16 15 13 44 44 H 1.09004 * 113.54878 * 140.98836 * 16 15 13 45 45 H 0.97002 * 119.99609 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0576 1.3930 -2.4969 7 6 2.9431 1.3862 1.2492 8 6 3.5783 2.7505 1.3287 9 8 3.2633 3.6132 0.5365 10 7 4.4966 3.0120 2.2800 11 6 4.9572 1.9413 3.1674 12 6 5.0339 4.3670 2.4266 13 6 6.3331 4.4896 1.6280 14 1 6.2604 4.0469 0.6346 15 6 7.5764 4.0403 2.4080 16 6 8.2284 5.2430 1.7062 17 7 6.8915 5.8500 1.6233 18 6 6.3883 7.1222 1.5624 19 1 5.4178 7.3398 1.9833 20 6 7.1232 8.1308 0.9544 21 7 6.7230 9.3816 1.0432 22 14 8.6800 7.7131 0.0103 23 1 8.3257 7.3071 -1.3735 24 1 9.5662 8.9037 -0.0347 25 1 9.3855 6.5962 0.6886 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 3.5346 2.3011 -1.2185 30 1 3.6092 0.5239 -1.2811 31 1 1.4662 0.4778 -2.5277 32 1 1.3915 2.2551 -2.4651 33 1 2.6843 1.4502 -3.3869 34 1 3.7218 0.6254 1.1953 35 1 2.3316 1.2179 2.1357 36 1 4.3198 1.9020 4.0508 37 1 4.9088 0.9876 2.6418 38 1 5.9858 2.1375 3.4700 39 1 5.2342 4.5664 3.4793 40 1 4.3077 5.0884 2.0520 41 1 7.4872 4.1441 3.4894 42 1 7.9722 3.0728 2.0993 43 1 8.6554 4.9988 0.7336 44 1 8.9182 5.7973 2.3428 45 1 7.2367 10.0864 0.6187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:37 Heat of formation + Delta-G solvation = 19.143459 kcal Electronic energy + Delta-G solvation = -22630.778795 eV Core-core repulsion = 19457.086282 eV Total energy + Delta-G solvation = -3173.692514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23003 -39.98668 -37.74622 -36.36805 -34.46598 -32.64806 -31.82604 -30.43254 -29.64782 -27.35319 -25.74547 -25.09510 -23.86418 -22.65110 -21.22216 -20.51139 -19.96450 -18.79388 -17.86594 -17.52579 -17.04957 -16.72671 -15.83144 -15.77199 -15.50372 -15.35528 -14.95376 -14.72525 -14.27576 -14.20688 -14.04415 -13.61437 -13.51703 -13.44747 -13.41099 -13.08207 -12.82172 -12.78141 -12.49924 -12.10143 -12.03479 -11.99519 -11.92323 -11.68880 -11.59979 -11.48022 -11.11922 -10.73367 -10.57916 -10.17149 -9.57475 -8.94168 -8.20208 -5.60735 1.31793 1.35352 1.42781 1.45067 1.72730 2.10455 2.41272 3.09174 3.14210 3.58582 3.72457 3.80924 4.10266 4.11142 4.21842 4.30880 4.37583 4.39496 4.44271 4.46132 4.57989 4.62519 4.63249 4.76637 4.82350 4.85781 4.94282 4.97002 4.99868 5.02806 5.03494 5.09447 5.12121 5.19429 5.35750 5.40506 5.46047 5.59002 5.66683 5.78797 5.99834 6.15302 6.51007 6.54430 7.30867 7.39797 8.33165 9.01218 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.004159 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.588776 B = 6731.037329 C = 7253.793511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C -0.048 4.048 4 H 0.051 0.949 5 C -0.118 4.118 6 C -0.145 4.145 7 C -0.118 4.118 8 C 0.495 3.505 9 O -0.590 6.590 10 N -0.611 5.611 11 C 0.069 3.931 12 C 0.129 3.871 13 C 0.125 3.875 14 H 0.030 0.970 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.645 5.645 18 C -0.215 4.215 19 H 0.048 0.952 20 C -0.041 4.041 21 N -0.969 5.969 22 Si 0.924 3.076 23 H -0.298 1.298 24 H -0.301 1.301 25 H -0.199 1.199 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -27.734 3.433 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.159 4.159 3 C -0.067 4.067 4 H 0.069 0.931 5 C -0.156 4.156 6 C -0.203 4.203 7 C -0.157 4.157 8 C 0.285 3.715 9 O -0.470 6.470 10 N -0.344 5.344 11 C -0.072 4.072 12 C 0.005 3.995 13 C 0.018 3.982 14 H 0.047 0.953 15 C -0.155 4.155 16 C -0.026 4.026 17 N -0.373 5.373 18 C -0.343 4.343 19 H 0.066 0.934 20 C -0.235 4.235 21 N -0.616 5.616 22 Si 0.751 3.249 23 H -0.226 1.226 24 H -0.228 1.228 25 H -0.121 1.121 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.029 -26.913 3.019 27.545 hybrid contribution 0.270 1.451 -1.004 1.785 sum -4.760 -25.462 2.015 25.982 Atomic orbital electron populations 1.23992 0.96097 1.02151 1.00856 1.22884 0.95833 0.97371 0.99774 1.20124 0.96653 0.96109 0.93803 0.93080 1.21549 0.98127 1.01513 0.94368 1.21709 0.99639 1.01583 0.97329 1.21751 1.00731 0.92659 1.00562 1.21620 0.78942 0.91410 0.79501 1.90730 1.63994 1.50405 1.41898 1.47999 1.41244 1.10420 1.34734 1.22178 1.01531 0.89592 0.93915 1.21330 0.94772 0.83240 1.00192 1.22655 0.94340 0.85099 0.96113 0.95286 1.23499 0.94337 0.97537 1.00079 1.22958 0.88802 0.93196 0.97615 1.46305 1.04488 1.00021 1.86526 1.18370 1.03330 0.83042 1.29599 0.93409 1.26100 1.03054 0.95158 0.99202 1.69903 1.42317 1.00278 1.49060 0.86265 0.80386 0.78983 0.79251 1.22574 1.22827 1.12141 0.89901 0.86583 0.84933 0.94220 0.90387 0.91148 0.94585 0.92909 0.85683 0.86603 0.90984 0.88297 0.89629 0.89293 0.94897 0.87991 0.87829 0.94037 0.93116 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 14.32 67.78 0.97 -1.81 16 2 C -0.14 -2.03 7.68 25.65 0.20 -1.84 16 3 C -0.05 -1.00 1.81 -11.54 -0.02 -1.02 16 4 H 0.05 1.40 7.46 -2.38 -0.02 1.38 16 5 C -0.12 -2.76 5.20 30.59 0.16 -2.60 16 6 C -0.15 -3.20 9.71 71.98 0.70 -2.50 16 7 C -0.12 -2.12 4.01 29.84 0.12 -2.00 16 8 C 0.50 14.72 7.23 87.65 0.63 15.36 16 9 O -0.59 -24.87 13.88 -3.06 -0.04 -24.92 16 10 N -0.61 -16.28 2.87 -846.78 -2.43 -18.71 16 11 C 0.07 0.95 10.22 127.77 1.31 2.26 16 12 C 0.13 4.68 5.36 86.38 0.46 5.14 16 13 C 0.12 4.85 4.30 41.79 0.18 5.03 16 14 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 15 C -0.12 -3.35 7.15 31.02 0.22 -3.12 16 16 C 0.10 3.86 5.37 83.27 0.45 4.30 16 17 N -0.65 -31.80 3.21 -713.45 -2.29 -34.09 16 18 C -0.22 -13.14 11.00 84.03 0.92 -12.21 16 19 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 20 C -0.04 -2.56 5.50 84.86 0.47 -2.09 16 21 N -0.97 -64.79 13.97 21.65 0.30 -64.48 16 22 Si 0.92 47.04 26.97 68.60 1.85 48.89 16 23 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 24 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 25 H -0.20 -8.60 3.96 99.48 0.39 -8.21 16 26 H 0.08 1.40 7.83 -2.91 -0.02 1.37 16 27 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 28 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 29 H 0.04 1.26 6.24 -2.39 -0.01 1.25 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.26 7.33 -2.39 -0.02 1.24 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 1.42 6.91 -2.39 -0.02 1.40 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.10 0.79 6.31 -2.39 -0.02 0.78 16 38 H 0.08 1.05 7.17 -2.39 -0.02 1.03 16 39 H 0.09 2.92 7.85 -2.39 -0.02 2.90 16 40 H 0.03 1.54 7.37 -2.39 -0.02 1.52 16 41 H 0.10 2.58 7.95 -2.38 -0.02 2.56 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 1.62 6.75 -2.39 -0.02 1.60 16 44 H 0.05 1.99 7.54 -2.39 -0.02 1.97 16 45 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 Total: -1.00 -83.40 354.13 4.78 -78.62 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.62 Total: 11.78 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.77 Total: 2.90 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.42 Total: -117.28 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.85 Total: 48.89 kcal Total: -83.40 4.78 -78.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.762 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds