Wall clock time and date at job start Tue Mar 31 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47002 * 55.00357 * 3 2 1 5 5 C 1.52997 * 109.46948 * 175.00301 * 3 2 1 6 6 N 1.46496 * 109.47281 * 175.00535 * 5 3 2 7 7 C 1.34775 * 120.00181 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.81450 * 294.00568 * 9 7 6 11 11 C 1.53029 * 109.64055 * 173.47395 * 9 7 6 12 12 C 1.50063 * 110.14996 * 289.75671 * 11 9 7 13 13 C 1.29441 * 124.07410 * 342.86095 * 12 11 9 14 14 C 1.50065 * 124.07796 * 0.47951 * 13 12 11 15 15 C 1.53023 * 110.14644 * 342.86141 * 14 13 12 16 16 N 1.46499 * 109.47594 * 295.00360 * 3 2 1 17 17 C 1.36935 * 119.99926 * 84.99532 * 16 3 2 18 18 H 1.07999 * 120.00237 * 0.02562 * 17 16 3 19 19 C 1.38812 * 119.99898 * 180.02562 * 17 16 3 20 20 N 1.31617 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47214 * 89.99719 * 21 19 17 23 23 H 1.48501 * 109.46937 * 209.99848 * 21 19 17 24 24 H 1.48495 * 109.46945 * 329.99902 * 21 19 17 25 25 H 1.09007 * 109.47094 * 59.99394 * 1 2 3 26 26 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46701 * 299.99956 * 1 2 3 28 28 H 1.09002 * 109.46703 * 240.00576 * 2 1 3 29 29 H 1.08998 * 109.47314 * 120.00475 * 2 1 3 30 30 H 1.09000 * 109.47510 * 55.00073 * 5 3 2 31 31 H 1.09013 * 109.47053 * 295.00041 * 5 3 2 32 32 H 0.97006 * 120.00081 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47159 * 180.52829 * 10 9 7 34 34 H 1.09004 * 109.46964 * 300.52781 * 10 9 7 35 35 H 1.08997 * 109.47041 * 60.52807 * 10 9 7 36 36 H 1.09000 * 109.35672 * 49.96688 * 11 9 7 37 37 H 1.09002 * 109.35452 * 169.68117 * 11 9 7 38 38 H 1.07994 * 117.96269 * 162.89578 * 12 11 9 39 39 H 1.07998 * 117.96126 * 180.44650 * 13 12 11 40 40 H 1.08997 * 109.35819 * 222.65841 * 14 13 12 41 41 H 1.09001 * 109.36123 * 103.06601 * 14 13 12 42 42 H 1.09001 * 109.64142 * 289.75454 * 15 14 13 43 43 H 1.09002 * 109.64769 * 169.11898 * 15 14 13 44 44 H 0.96994 * 119.99575 * 265.00126 * 16 3 2 45 45 H 0.97004 * 120.00079 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1635 2.1483 0.2582 9 6 5.8983 4.4747 -0.0368 10 6 5.6342 5.0005 -1.4491 11 6 7.4012 4.5033 0.2502 12 6 7.6543 4.2457 1.7067 13 6 6.7514 4.3464 2.6286 14 6 5.3227 4.7249 2.3686 15 6 5.1917 5.3714 0.9878 16 7 1.6525 2.0976 -1.2517 17 6 0.4157 2.6736 -1.3686 18 1 -0.2739 2.6452 -0.5380 19 6 0.0482 3.2938 -2.5549 20 7 0.8888 3.3288 -3.5670 21 14 -1.6387 4.0802 -2.7142 22 1 -1.5658 5.4997 -2.2841 23 1 -2.0841 4.0139 -4.1293 24 1 -2.6073 3.3520 -1.8558 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9954 0.8311 -0.6660 31 1 3.8500 1.0376 1.0960 32 1 3.4411 3.5483 -0.1314 33 1 6.0153 6.0181 -1.5351 34 1 6.1375 4.3615 -2.1747 35 1 4.5617 4.9965 -1.6436 36 1 7.8971 3.7358 -0.3441 37 1 7.8013 5.4814 -0.0167 38 1 8.6521 3.9589 2.0042 39 1 7.0443 4.1450 3.6484 40 1 4.9913 5.4302 3.1306 41 1 4.6990 3.8319 2.4099 42 1 5.6602 6.3556 0.9981 43 1 4.1378 5.4666 0.7262 44 1 2.2720 2.1233 -1.9976 45 1 0.6322 3.7625 -4.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318529144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:36 Heat of formation + Delta-G solvation = -35.065808 kcal Electronic energy + Delta-G solvation = -23262.291264 eV Core-core repulsion = 20086.248060 eV Total energy + Delta-G solvation = -3176.043204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45233 -37.49981 -36.39554 -33.76752 -32.81882 -32.28755 -30.71035 -29.72087 -27.83462 -26.51139 -24.11459 -23.09717 -23.00079 -21.78358 -20.06046 -19.43639 -18.06858 -17.16172 -16.18087 -15.83300 -15.38616 -15.10862 -14.72084 -14.07234 -13.96271 -13.71903 -13.51522 -13.16161 -13.07467 -12.73703 -12.60364 -12.46560 -12.11329 -12.00938 -11.87988 -11.74904 -11.41709 -11.41151 -10.97267 -10.88505 -10.73720 -10.43806 -10.33420 -10.19594 -10.11154 -10.00385 -9.54814 -9.25641 -8.96270 -8.88152 -8.49359 -7.04076 -5.82711 -3.11599 2.43067 3.09544 3.37990 3.44655 3.45908 3.66435 4.53056 4.61037 4.74040 4.81186 5.19204 5.26831 5.37362 5.40670 5.43802 5.47020 5.52031 5.58290 5.69796 5.82319 5.83388 5.91751 5.93614 5.94667 5.96810 5.99407 6.13540 6.14794 6.24491 6.26565 6.34318 6.43927 6.56523 6.58730 6.62573 6.73689 6.97302 7.04775 7.06061 7.24050 7.65279 8.05668 8.34707 8.70538 9.46743 10.02121 10.38343 11.39130 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.005134 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.861352 B = 5452.013549 C = 6199.050871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.711 5.711 7 C 0.525 3.475 8 O -0.551 6.551 9 C -0.080 4.080 10 C -0.141 4.141 11 C -0.068 4.068 12 C -0.137 4.137 13 C -0.164 4.164 14 C -0.094 4.094 15 C -0.108 4.108 16 N -0.720 5.720 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 3.132 9.435 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.009 4.009 6 N -0.363 5.363 7 C 0.311 3.689 8 O -0.429 6.429 9 C -0.083 4.083 10 C -0.199 4.199 11 C -0.105 4.105 12 C -0.155 4.155 13 C -0.182 4.182 14 C -0.131 4.131 15 C -0.146 4.146 16 N -0.363 5.363 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.689 2.538 9.571 13.853 hybrid contribution -1.067 0.608 -0.442 1.305 sum 8.622 3.147 9.129 12.945 Atomic orbital electron populations 1.21768 0.95743 0.99592 1.03221 1.22071 0.96929 0.98501 0.99973 1.20554 0.90054 0.92699 0.91367 0.92962 1.21626 0.95465 0.83011 1.00827 1.45967 1.07197 1.10443 1.72692 1.20272 0.82392 0.90438 0.75785 1.90634 1.56169 1.46333 1.49795 1.20878 0.96772 0.93146 0.97485 1.21837 1.03432 1.01011 0.93604 1.20340 0.93710 1.01919 0.94555 1.21896 0.99004 0.99867 0.94729 1.21912 0.95212 1.02331 0.98783 1.20483 0.94825 1.00789 0.97049 1.21700 1.00902 0.98358 0.93639 1.42441 1.16728 1.65808 1.11289 1.19201 0.91964 1.27634 0.97922 0.90963 1.24716 0.97988 1.01622 0.96378 1.69660 1.35176 1.48927 1.03968 0.86278 0.84243 0.79314 0.76875 1.21796 1.21898 1.20788 0.89673 0.94925 0.94158 0.92565 0.93921 0.92071 0.92172 0.75467 0.91725 0.92049 0.90929 0.90064 0.90526 0.88235 0.88402 0.90987 0.90788 0.90793 0.90706 0.78099 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 1.98 5.23 -4.05 -0.02 1.96 16 6 N -0.71 -11.84 5.14 -60.29 -0.31 -12.15 16 7 C 0.53 8.74 4.74 -10.98 -0.05 8.69 16 8 O -0.55 -10.81 15.33 5.56 0.09 -10.73 16 9 C -0.08 -1.07 0.66 -155.44 -0.10 -1.17 16 10 C -0.14 -1.84 8.46 37.16 0.31 -1.53 16 11 C -0.07 -0.86 4.54 -28.18 -0.13 -0.98 16 12 C -0.14 -1.73 9.08 -35.90 -0.33 -2.05 16 13 C -0.16 -2.04 9.61 -35.90 -0.35 -2.38 16 14 C -0.09 -1.14 5.59 -28.18 -0.16 -1.30 16 15 C -0.11 -1.29 4.71 -26.51 -0.12 -1.41 16 16 N -0.72 -16.15 4.51 -53.43 -0.24 -16.39 16 17 C -0.24 -5.89 7.75 -15.06 -0.12 -6.01 16 18 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 21 Si 0.90 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.41 6.90 7.32 -40.82 -0.30 6.60 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.08 1.12 7.67 -51.93 -0.40 0.72 16 37 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.10 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.01 7.33 -51.93 -0.38 0.62 16 42 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.07 0.90 7.55 -51.93 -0.39 0.50 16 44 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -28.48 353.21 -8.53 -37.02 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.95 Total: 14.78 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.14 Total: -8.47 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.17 Total: -54.12 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.48 -8.53 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.950 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds