Wall clock time and date at job start Tue Mar 31 2020 01:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47002 * 55.00357 * 3 2 1 5 5 C 1.52997 * 109.46948 * 175.00301 * 3 2 1 6 6 N 1.46496 * 109.47281 * 175.00535 * 5 3 2 7 7 C 1.34775 * 120.00181 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.81450 * 294.00568 * 9 7 6 11 11 C 1.53029 * 109.64055 * 173.47395 * 9 7 6 12 12 C 1.50063 * 110.14996 * 289.75671 * 11 9 7 13 13 C 1.29441 * 124.07410 * 342.86095 * 12 11 9 14 14 C 1.50065 * 124.07796 * 0.47951 * 13 12 11 15 15 C 1.53023 * 110.14644 * 342.86141 * 14 13 12 16 16 N 1.46499 * 109.47594 * 295.00360 * 3 2 1 17 17 C 1.36935 * 119.99926 * 84.99532 * 16 3 2 18 18 H 1.07999 * 120.00237 * 0.02562 * 17 16 3 19 19 C 1.38812 * 119.99898 * 180.02562 * 17 16 3 20 20 N 1.31617 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47214 * 89.99719 * 21 19 17 23 23 H 1.48501 * 109.46937 * 209.99848 * 21 19 17 24 24 H 1.48495 * 109.46945 * 329.99902 * 21 19 17 25 25 H 1.09007 * 109.47094 * 59.99394 * 1 2 3 26 26 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46701 * 299.99956 * 1 2 3 28 28 H 1.09002 * 109.46703 * 240.00576 * 2 1 3 29 29 H 1.08998 * 109.47314 * 120.00475 * 2 1 3 30 30 H 1.09000 * 109.47510 * 55.00073 * 5 3 2 31 31 H 1.09013 * 109.47053 * 295.00041 * 5 3 2 32 32 H 0.97006 * 120.00081 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47159 * 180.52829 * 10 9 7 34 34 H 1.09004 * 109.46964 * 300.52781 * 10 9 7 35 35 H 1.08997 * 109.47041 * 60.52807 * 10 9 7 36 36 H 1.09000 * 109.35672 * 49.96688 * 11 9 7 37 37 H 1.09002 * 109.35452 * 169.68117 * 11 9 7 38 38 H 1.07994 * 117.96269 * 162.89578 * 12 11 9 39 39 H 1.07998 * 117.96126 * 180.44650 * 13 12 11 40 40 H 1.08997 * 109.35819 * 222.65841 * 14 13 12 41 41 H 1.09001 * 109.36123 * 103.06601 * 14 13 12 42 42 H 1.09001 * 109.64142 * 289.75454 * 15 14 13 43 43 H 1.09002 * 109.64769 * 169.11898 * 15 14 13 44 44 H 0.96994 * 119.99575 * 265.00126 * 16 3 2 45 45 H 0.97004 * 120.00079 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1635 2.1483 0.2582 9 6 5.8983 4.4747 -0.0368 10 6 5.6342 5.0005 -1.4491 11 6 7.4012 4.5033 0.2502 12 6 7.6543 4.2457 1.7067 13 6 6.7514 4.3464 2.6286 14 6 5.3227 4.7249 2.3686 15 6 5.1917 5.3714 0.9878 16 7 1.6525 2.0976 -1.2517 17 6 0.4157 2.6736 -1.3686 18 1 -0.2739 2.6452 -0.5380 19 6 0.0482 3.2938 -2.5549 20 7 0.8888 3.3288 -3.5670 21 14 -1.6387 4.0802 -2.7142 22 1 -1.5658 5.4997 -2.2841 23 1 -2.0841 4.0139 -4.1293 24 1 -2.6073 3.3520 -1.8558 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9954 0.8311 -0.6660 31 1 3.8500 1.0376 1.0960 32 1 3.4411 3.5483 -0.1314 33 1 6.0153 6.0181 -1.5351 34 1 6.1375 4.3615 -2.1747 35 1 4.5617 4.9965 -1.6436 36 1 7.8971 3.7358 -0.3441 37 1 7.8013 5.4814 -0.0167 38 1 8.6521 3.9589 2.0042 39 1 7.0443 4.1450 3.6484 40 1 4.9913 5.4302 3.1306 41 1 4.6990 3.8319 2.4099 42 1 5.6602 6.3556 0.9981 43 1 4.1378 5.4666 0.7262 44 1 2.2720 2.1233 -1.9976 45 1 0.6322 3.7625 -4.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318529144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:35 Heat of formation + Delta-G solvation = -51.607931 kcal Electronic energy + Delta-G solvation = -23263.008584 eV Core-core repulsion = 20086.248060 eV Total energy + Delta-G solvation = -3176.760524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65426 -38.82152 -37.84348 -35.26365 -34.25253 -33.67993 -31.71305 -31.43097 -29.38535 -27.52252 -25.79009 -24.59899 -24.02041 -23.08275 -21.57681 -20.66188 -19.41672 -18.87229 -17.23214 -17.13544 -16.97406 -16.36208 -16.11595 -15.70491 -15.32553 -14.88947 -14.82856 -14.62680 -14.47918 -14.14607 -13.85034 -13.56297 -13.38618 -13.14608 -12.98878 -12.91940 -12.85355 -12.74629 -12.71899 -12.41571 -12.34926 -12.10279 -11.85567 -11.62208 -11.32758 -11.32355 -11.07108 -10.90234 -10.55203 -9.98124 -9.76081 -8.95090 -7.85097 -5.11997 1.48228 1.51368 1.53227 1.59724 1.77579 2.36524 2.61802 3.48472 3.59451 3.70452 3.76941 3.91365 3.98069 4.16272 4.24987 4.37917 4.41521 4.46004 4.48904 4.55055 4.58471 4.74230 4.75817 4.81700 4.87423 4.88502 4.93345 5.01222 5.10110 5.13727 5.14533 5.21305 5.25448 5.27338 5.30925 5.51460 5.61569 5.64743 5.72444 5.79397 6.11096 6.34802 6.69334 7.35916 7.43002 8.14264 8.39998 9.37738 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.005134 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.861352 B = 5452.013549 C = 6199.050871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.167 3.833 4 H 0.058 0.942 5 C 0.124 3.876 6 N -0.710 5.710 7 C 0.523 3.477 8 O -0.584 6.584 9 C -0.077 4.077 10 C -0.137 4.137 11 C -0.067 4.067 12 C -0.149 4.149 13 C -0.171 4.171 14 C -0.095 4.095 15 C -0.105 4.105 16 N -0.725 5.725 17 C -0.215 4.215 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.957 3.043 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.273 1.273 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.325 3.791 11.248 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.058 3.942 4 H 0.076 0.924 5 C -0.001 4.001 6 N -0.361 5.361 7 C 0.310 3.690 8 O -0.464 6.464 9 C -0.080 4.080 10 C -0.194 4.194 11 C -0.104 4.104 12 C -0.167 4.167 13 C -0.189 4.189 14 C -0.132 4.132 15 C -0.142 4.142 16 N -0.366 5.366 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.788 3.212 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.198 1.198 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.245 0.755 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.672 3.184 11.436 15.312 hybrid contribution -1.032 0.316 -0.922 1.420 sum 8.640 3.500 10.513 14.051 Atomic orbital electron populations 1.21690 0.95848 1.00555 1.01820 1.21997 0.96717 0.97491 1.00874 1.20679 0.90822 0.93160 0.89564 0.92389 1.21498 0.94418 0.83336 1.00866 1.45975 1.07461 1.10116 1.72541 1.20884 0.81870 0.91607 0.74618 1.90612 1.56775 1.47706 1.51311 1.20913 0.97610 0.91231 0.98233 1.21810 1.02140 1.02436 0.93061 1.20362 0.92748 1.02813 0.94524 1.22061 0.99732 1.00166 0.94719 1.22097 0.95261 1.02122 0.99427 1.20503 0.94434 1.00518 0.97732 1.21717 1.00717 0.98901 0.92908 1.42542 1.15780 1.66029 1.12241 1.19477 0.92452 1.25326 0.97439 0.90295 1.25333 1.00824 1.03487 0.96624 1.69804 1.36760 1.50943 1.04286 0.85372 0.81239 0.78580 0.75973 1.21644 1.23293 1.19772 0.93226 0.92928 0.93175 0.93746 0.90889 0.93652 0.90861 0.75539 0.88908 0.93152 0.92785 0.91719 0.87936 0.87330 0.87277 0.88981 0.92615 0.88606 0.90994 0.79603 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.29 5.61 30.60 0.17 -4.12 16 3 C 0.17 5.94 2.59 44.99 0.12 6.06 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 4.18 5.23 86.38 0.45 4.63 16 6 N -0.71 -23.51 5.14 -463.06 -2.38 -25.89 16 7 C 0.52 17.27 4.74 87.66 0.42 17.69 16 8 O -0.58 -22.94 15.33 -3.03 -0.05 -22.99 16 9 C -0.08 -1.98 0.66 -52.78 -0.03 -2.02 16 10 C -0.14 -3.45 8.46 71.98 0.61 -2.84 16 11 C -0.07 -1.60 4.54 29.66 0.13 -1.46 16 12 C -0.15 -3.51 9.08 27.04 0.25 -3.26 16 13 C -0.17 -3.92 9.61 27.04 0.26 -3.66 16 14 C -0.09 -2.10 5.59 29.66 0.17 -1.94 16 15 C -0.10 -2.28 4.71 30.74 0.14 -2.14 16 16 N -0.73 -32.51 4.51 -322.95 -1.46 -33.97 16 17 C -0.22 -10.64 7.75 84.03 0.65 -9.99 16 18 H 0.08 3.77 7.32 -2.91 -0.02 3.74 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 20 N -0.97 -55.85 13.06 21.65 0.28 -55.57 16 21 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H 0.05 2.03 5.99 -2.38 -0.01 2.02 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.41 13.73 7.32 -92.70 -0.68 13.05 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.06 1.75 7.67 -2.39 -0.02 1.73 16 37 H 0.10 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.11 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.44 7.33 -2.39 -0.02 1.43 16 42 H 0.10 1.69 8.12 -2.39 -0.02 1.67 16 43 H 0.07 1.61 7.55 -2.39 -0.02 1.59 16 44 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 45 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -61.07 353.21 2.45 -58.61 By element: Atomic # 1 Polarization: 44.84 SS G_CDS: -0.44 Total: 44.40 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.46 Total: -10.45 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.55 Total: -115.42 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.07 2.45 -58.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.007 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds