Wall clock time and date at job start Tue Mar 31 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46788 * 2 1 4 4 H 1.08992 * 109.47327 * 55.00312 * 3 2 1 5 5 C 1.53005 * 109.46774 * 175.00368 * 3 2 1 6 6 N 1.46501 * 109.46928 * 175.00152 * 5 3 2 7 7 C 1.34781 * 119.99908 * 179.97438 * 6 5 3 8 8 O 1.21273 * 119.99975 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99726 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.64286 * 299.99752 * 9 7 6 11 11 C 1.53029 * 109.64219 * 60.42118 * 9 7 6 12 12 C 1.50547 * 109.88773 * 169.15909 * 11 9 7 13 13 C 1.29447 * 124.16245 * 342.99396 * 12 11 9 14 14 C 1.50072 * 124.07245 * 0.41665 * 13 12 11 15 15 C 1.53019 * 110.14765 * 342.86799 * 14 13 12 16 16 N 1.46505 * 109.47344 * 294.99966 * 3 2 1 17 17 C 1.36936 * 119.99875 * 85.00217 * 16 3 2 18 18 H 1.08000 * 119.99957 * 359.97438 * 17 16 3 19 19 C 1.38808 * 119.99761 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00194 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47167 * 59.99741 * 21 19 17 23 23 H 1.48501 * 109.47231 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47123 * 299.99611 * 21 19 17 25 25 H 1.08997 * 109.46847 * 60.00057 * 1 2 3 26 26 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47130 * 299.99751 * 1 2 3 28 28 H 1.09004 * 109.46982 * 240.00180 * 2 1 3 29 29 H 1.08998 * 109.47425 * 120.00438 * 2 1 3 30 30 H 1.09000 * 109.47525 * 55.00052 * 5 3 2 31 31 H 1.08996 * 109.46957 * 294.99563 * 5 3 2 32 32 H 0.97001 * 120.00334 * 359.97438 * 6 5 3 33 33 H 1.09002 * 109.47153 * 60.00122 * 10 9 7 34 34 H 1.09001 * 109.46832 * 300.00313 * 10 9 7 35 35 H 1.09004 * 109.47261 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.35674 * 289.53597 * 11 9 7 37 37 H 1.08996 * 109.35846 * 49.12233 * 11 9 7 38 38 H 1.07999 * 117.87816 * 162.91929 * 12 11 9 39 39 H 1.07997 * 117.96600 * 180.43020 * 13 12 11 40 40 H 1.09000 * 109.35676 * 222.65914 * 14 13 12 41 41 H 1.09001 * 109.24444 * 103.00214 * 14 13 12 42 42 H 1.09001 * 109.63868 * 289.75009 * 15 14 13 43 43 H 1.08995 * 109.81965 * 169.22950 * 15 14 13 44 44 H 0.96998 * 119.99739 * 265.00287 * 16 3 2 45 45 H 0.97001 * 119.99755 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8168 0.0059 7 6 5.3857 3.0631 0.0867 8 8 6.1633 2.1486 0.2590 9 6 5.8981 4.4749 -0.0370 10 6 5.5007 5.0488 -1.3984 11 6 5.3035 5.3375 1.0784 12 6 6.0055 6.6685 1.1258 13 6 7.1492 6.9074 0.5685 14 6 7.9326 5.8925 -0.2116 15 6 7.4259 4.4826 0.0997 16 7 1.6524 2.0975 -1.2518 17 6 0.4156 2.6735 -1.3688 18 1 -0.2743 2.6445 -0.5383 19 6 0.0482 3.2936 -2.5550 20 7 0.8887 3.3285 -3.5672 21 14 -1.6388 4.0800 -2.7143 22 1 -1.7865 5.1462 -1.6914 23 1 -1.7836 4.6709 -4.0690 24 1 -2.6871 3.0484 -2.5092 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9954 0.8311 -0.6660 31 1 3.8499 1.0377 1.0959 32 1 3.4410 3.5483 -0.1315 33 1 4.4145 5.0489 -1.4896 34 1 5.9318 4.4366 -2.1906 35 1 5.8730 6.0696 -1.4852 36 1 4.2410 5.4906 0.8893 37 1 5.4288 4.8289 2.0342 38 1 5.5232 7.4751 1.6578 39 1 7.5656 7.8985 0.6715 40 1 8.9865 5.9653 0.0570 41 1 7.8168 6.0910 -1.2772 42 1 7.7042 4.2099 1.1177 43 1 7.8602 3.7705 -0.6020 44 1 2.2719 2.1232 -1.9978 45 1 0.6321 3.7622 -4.3961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318529152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:39 Heat of formation + Delta-G solvation = -35.726599 kcal Electronic energy + Delta-G solvation = -22963.069140 eV Core-core repulsion = 19786.997282 eV Total energy + Delta-G solvation = -3176.071858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35307 -37.93497 -36.56850 -33.73670 -32.51796 -32.06941 -30.79633 -29.72044 -27.78693 -27.01797 -24.08435 -23.44890 -22.85029 -21.63764 -20.10079 -19.39505 -17.56969 -17.04699 -16.91687 -15.76350 -15.40627 -15.09643 -14.58686 -14.29474 -14.04406 -14.02839 -13.39789 -13.24318 -13.10875 -12.88772 -12.83050 -12.46616 -12.18381 -12.04684 -11.73307 -11.53972 -11.41402 -10.97198 -10.88978 -10.86542 -10.75307 -10.61842 -10.43492 -10.24066 -10.21056 -10.02783 -9.54777 -9.27729 -9.03645 -8.95460 -8.56264 -7.04508 -5.82623 -3.11729 2.25469 3.01049 3.38603 3.44235 3.45164 3.62118 4.52930 4.60443 4.64921 4.89277 5.16343 5.21669 5.26398 5.35806 5.43048 5.43748 5.50512 5.57043 5.67059 5.69905 5.84700 5.92643 5.93670 5.95863 5.97712 6.00402 6.05284 6.18947 6.21471 6.26537 6.43132 6.46251 6.55739 6.58012 6.61623 6.62240 6.90221 6.94536 7.03457 7.23790 7.64653 8.00730 8.34739 8.64037 9.46682 10.01853 10.38050 11.39122 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.005011 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.049057 B = 5585.851280 C = 6666.296301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.709 5.709 7 C 0.520 3.480 8 O -0.556 6.556 9 C -0.076 4.076 10 C -0.142 4.142 11 C -0.080 4.080 12 C -0.147 4.147 13 C -0.158 4.158 14 C -0.092 4.092 15 C -0.093 4.093 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 4.266 8.347 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.011 4.011 6 N -0.360 5.360 7 C 0.306 3.694 8 O -0.435 6.435 9 C -0.080 4.080 10 C -0.200 4.200 11 C -0.117 4.117 12 C -0.165 4.165 13 C -0.176 4.176 14 C -0.129 4.129 15 C -0.131 4.131 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.191 3.689 8.474 13.758 hybrid contribution -1.191 0.781 -0.481 1.503 sum 9.000 4.470 7.994 12.841 Atomic orbital electron populations 1.21767 0.95744 0.99613 1.03222 1.22070 0.96936 0.98464 0.99990 1.20560 0.90008 0.92748 0.91397 0.92922 1.21658 0.95552 0.82927 1.00935 1.45997 1.07205 1.10587 1.72257 1.20448 0.82427 0.90547 0.75998 1.90638 1.56223 1.46468 1.50123 1.20817 0.97152 0.92305 0.97680 1.21913 1.02717 1.01208 0.94131 1.20589 0.99889 0.93337 0.97872 1.22061 0.96421 0.97587 1.00457 1.22035 0.96510 0.99360 0.99724 1.20529 0.98889 0.93510 0.99988 1.21413 0.92651 0.96243 1.02744 1.42441 1.16730 1.65843 1.11283 1.19153 0.91960 1.27795 0.97950 0.91009 1.24715 0.97975 1.01580 0.96373 1.69649 1.35202 1.48899 1.03969 0.86353 0.84350 0.79237 0.76737 1.21332 1.21801 1.21299 0.89673 0.94910 0.94144 0.92553 0.93894 0.91965 0.92034 0.75354 0.91208 0.92158 0.91300 0.90068 0.90604 0.87795 0.88100 0.91114 0.90495 0.91497 0.90794 0.78087 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 2.99 2.59 -67.93 -0.18 2.82 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.81 5.20 -60.29 -0.31 -12.12 16 7 C 0.52 8.68 6.47 -10.98 -0.07 8.61 16 8 O -0.56 -10.91 15.89 5.56 0.09 -10.83 16 9 C -0.08 -1.04 0.63 -155.44 -0.10 -1.13 16 10 C -0.14 -1.94 7.71 37.16 0.29 -1.65 16 11 C -0.08 -0.96 4.76 -27.94 -0.13 -1.09 16 12 C -0.15 -1.58 9.42 -35.67 -0.34 -1.91 16 13 C -0.16 -1.60 9.15 -35.90 -0.33 -1.93 16 14 C -0.09 -0.95 5.49 -28.18 -0.15 -1.10 16 15 C -0.09 -1.17 4.34 -26.52 -0.12 -1.29 16 16 N -0.72 -16.19 4.51 -53.43 -0.24 -16.43 16 17 C -0.24 -5.94 7.75 -15.06 -0.12 -6.05 16 18 H 0.07 1.76 7.32 -52.49 -0.38 1.37 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16 21 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 6.91 7.26 -40.82 -0.30 6.61 16 33 H 0.07 1.05 7.58 -51.93 -0.39 0.65 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.83 5.69 -51.93 -0.30 0.54 16 36 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.77 6.92 -51.93 -0.36 0.41 16 42 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 43 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 44 H 0.39 9.51 7.80 -40.82 -0.32 9.19 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -28.32 351.53 -8.44 -36.76 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -7.80 Total: 14.61 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.17 Total: -7.88 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.17 Total: -54.20 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.32 -8.44 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.034 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds