Wall clock time and date at job start Tue Mar 31 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46788 * 2 1 4 4 H 1.08992 * 109.47327 * 55.00312 * 3 2 1 5 5 C 1.53005 * 109.46774 * 175.00368 * 3 2 1 6 6 N 1.46501 * 109.46928 * 175.00152 * 5 3 2 7 7 C 1.34781 * 119.99908 * 179.97438 * 6 5 3 8 8 O 1.21273 * 119.99975 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99726 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.64286 * 299.99752 * 9 7 6 11 11 C 1.53029 * 109.64219 * 60.42118 * 9 7 6 12 12 C 1.50547 * 109.88773 * 169.15909 * 11 9 7 13 13 C 1.29447 * 124.16245 * 342.99396 * 12 11 9 14 14 C 1.50072 * 124.07245 * 0.41665 * 13 12 11 15 15 C 1.53019 * 110.14765 * 342.86799 * 14 13 12 16 16 N 1.46505 * 109.47344 * 294.99966 * 3 2 1 17 17 C 1.36936 * 119.99875 * 85.00217 * 16 3 2 18 18 H 1.08000 * 119.99957 * 359.97438 * 17 16 3 19 19 C 1.38808 * 119.99761 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00194 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47167 * 59.99741 * 21 19 17 23 23 H 1.48501 * 109.47231 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47123 * 299.99611 * 21 19 17 25 25 H 1.08997 * 109.46847 * 60.00057 * 1 2 3 26 26 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47130 * 299.99751 * 1 2 3 28 28 H 1.09004 * 109.46982 * 240.00180 * 2 1 3 29 29 H 1.08998 * 109.47425 * 120.00438 * 2 1 3 30 30 H 1.09000 * 109.47525 * 55.00052 * 5 3 2 31 31 H 1.08996 * 109.46957 * 294.99563 * 5 3 2 32 32 H 0.97001 * 120.00334 * 359.97438 * 6 5 3 33 33 H 1.09002 * 109.47153 * 60.00122 * 10 9 7 34 34 H 1.09001 * 109.46832 * 300.00313 * 10 9 7 35 35 H 1.09004 * 109.47261 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.35674 * 289.53597 * 11 9 7 37 37 H 1.08996 * 109.35846 * 49.12233 * 11 9 7 38 38 H 1.07999 * 117.87816 * 162.91929 * 12 11 9 39 39 H 1.07997 * 117.96600 * 180.43020 * 13 12 11 40 40 H 1.09000 * 109.35676 * 222.65914 * 14 13 12 41 41 H 1.09001 * 109.24444 * 103.00214 * 14 13 12 42 42 H 1.09001 * 109.63868 * 289.75009 * 15 14 13 43 43 H 1.08995 * 109.81965 * 169.22950 * 15 14 13 44 44 H 0.96998 * 119.99739 * 265.00287 * 16 3 2 45 45 H 0.97001 * 119.99755 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8168 0.0059 7 6 5.3857 3.0631 0.0867 8 8 6.1633 2.1486 0.2590 9 6 5.8981 4.4749 -0.0370 10 6 5.5007 5.0488 -1.3984 11 6 5.3035 5.3375 1.0784 12 6 6.0055 6.6685 1.1258 13 6 7.1492 6.9074 0.5685 14 6 7.9326 5.8925 -0.2116 15 6 7.4259 4.4826 0.0997 16 7 1.6524 2.0975 -1.2518 17 6 0.4156 2.6735 -1.3688 18 1 -0.2743 2.6445 -0.5383 19 6 0.0482 3.2936 -2.5550 20 7 0.8887 3.3285 -3.5672 21 14 -1.6388 4.0800 -2.7143 22 1 -1.7865 5.1462 -1.6914 23 1 -1.7836 4.6709 -4.0690 24 1 -2.6871 3.0484 -2.5092 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9954 0.8311 -0.6660 31 1 3.8499 1.0377 1.0959 32 1 3.4410 3.5483 -0.1315 33 1 4.4145 5.0489 -1.4896 34 1 5.9318 4.4366 -2.1906 35 1 5.8730 6.0696 -1.4852 36 1 4.2410 5.4906 0.8893 37 1 5.4288 4.8289 2.0342 38 1 5.5232 7.4751 1.6578 39 1 7.5656 7.8985 0.6715 40 1 8.9865 5.9653 0.0570 41 1 7.8168 6.0910 -1.2772 42 1 7.7042 4.2099 1.1177 43 1 7.8602 3.7705 -0.6020 44 1 2.2719 2.1232 -1.9978 45 1 0.6321 3.7622 -4.3961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318529152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:38 Heat of formation + Delta-G solvation = -52.139219 kcal Electronic energy + Delta-G solvation = -22963.780844 eV Core-core repulsion = 19786.997282 eV Total energy + Delta-G solvation = -3176.783563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56227 -39.14526 -38.09652 -35.27140 -34.19591 -33.16981 -31.73647 -31.44286 -29.32888 -28.08209 -25.75298 -24.69034 -24.14467 -22.85747 -21.60383 -20.67242 -19.24270 -18.32777 -17.97177 -17.12724 -16.97601 -16.23903 -16.11111 -15.63967 -15.43139 -15.20971 -14.94130 -14.60465 -14.32482 -14.24178 -14.01201 -13.79641 -13.52059 -13.13207 -12.95712 -12.82127 -12.77374 -12.73139 -12.59710 -12.36514 -12.13304 -11.89704 -11.84783 -11.66937 -11.56366 -11.32466 -11.21157 -10.89747 -10.55994 -9.98568 -9.84481 -8.95834 -7.85540 -5.12606 1.45754 1.51858 1.52730 1.58062 1.66491 2.30823 2.61325 3.47601 3.56119 3.65196 3.83449 3.90492 3.97225 4.16056 4.22125 4.38452 4.38722 4.42049 4.48519 4.55590 4.58105 4.69164 4.72441 4.75252 4.88078 4.89746 4.94116 5.04316 5.08903 5.09911 5.13708 5.19244 5.21870 5.29216 5.40089 5.49882 5.59293 5.62969 5.72457 5.81230 6.09326 6.34221 6.62421 7.27047 7.42404 8.13744 8.39298 9.37092 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.005011 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.049057 B = 5585.851280 C = 6666.296301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.059 0.941 5 C 0.121 3.879 6 N -0.708 5.708 7 C 0.517 3.483 8 O -0.587 6.587 9 C -0.072 4.072 10 C -0.135 4.135 11 C -0.077 4.077 12 C -0.159 4.159 13 C -0.154 4.154 14 C -0.090 4.090 15 C -0.091 4.091 16 N -0.726 5.726 17 C -0.217 4.217 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.958 3.042 22 H -0.278 1.278 23 H -0.304 1.304 24 H -0.284 1.284 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 5.075 10.001 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.358 5.358 7 C 0.304 3.696 8 O -0.468 6.468 9 C -0.075 4.075 10 C -0.192 4.192 11 C -0.114 4.114 12 C -0.177 4.177 13 C -0.172 4.172 14 C -0.127 4.127 15 C -0.129 4.129 16 N -0.367 5.367 17 C -0.349 4.349 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.788 3.212 22 H -0.205 1.205 23 H -0.231 1.231 24 H -0.210 1.210 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.344 4.486 10.181 15.192 hybrid contribution -1.203 0.430 -0.918 1.573 sum 9.141 4.916 9.264 13.912 Atomic orbital electron populations 1.21692 0.95887 1.00568 1.01814 1.21992 0.96689 0.97409 1.00944 1.20698 0.90805 0.93251 0.89573 0.92317 1.21562 0.94486 0.83150 1.01180 1.46011 1.07403 1.10372 1.72027 1.21042 0.81986 0.91643 0.74939 1.90616 1.56827 1.47771 1.51627 1.20825 0.97935 0.90459 0.98284 1.21850 1.01466 1.02108 0.93821 1.20553 0.99909 0.94002 0.96915 1.22116 0.96893 0.97100 1.01576 1.22230 0.96062 1.00160 0.98782 1.20551 0.99954 0.91758 1.00441 1.21394 0.91754 0.97757 1.01989 1.42550 1.15781 1.66087 1.12269 1.19445 0.92461 1.25475 0.97487 0.90285 1.25339 1.00831 1.03459 0.96621 1.69798 1.36796 1.50924 1.04273 0.85445 0.81169 0.78526 0.76013 1.20470 1.23084 1.21017 0.93285 0.92919 0.93125 0.93729 0.90760 0.93437 0.90448 0.75401 0.92921 0.93225 0.89388 0.90284 0.90812 0.86191 0.85873 0.89280 0.89981 0.92080 0.92274 0.79601 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.18 71.98 0.66 -4.13 16 2 C -0.13 -4.25 5.61 30.60 0.17 -4.08 16 3 C 0.17 5.90 2.59 44.99 0.12 6.01 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 4.07 5.23 86.38 0.45 4.52 16 6 N -0.71 -23.56 5.20 -463.06 -2.41 -25.96 16 7 C 0.52 17.31 6.47 87.66 0.57 17.88 16 8 O -0.59 -23.27 15.89 -3.01 -0.05 -23.32 16 9 C -0.07 -1.92 0.63 -52.79 -0.03 -1.96 16 10 C -0.14 -3.65 7.71 71.98 0.56 -3.09 16 11 C -0.08 -1.76 4.76 29.81 0.14 -1.61 16 12 C -0.16 -3.04 9.42 27.18 0.26 -2.78 16 13 C -0.15 -2.69 9.15 27.03 0.25 -2.45 16 14 C -0.09 -1.66 5.49 29.66 0.16 -1.49 16 15 C -0.09 -2.23 4.34 30.73 0.13 -2.10 16 16 N -0.73 -32.66 4.51 -322.94 -1.46 -34.11 16 17 C -0.22 -10.77 7.75 84.03 0.65 -10.12 16 18 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 20 N -0.97 -56.07 13.06 21.65 0.28 -55.79 16 21 Si 0.96 43.95 29.55 68.60 2.03 45.98 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 13.83 7.26 -92.71 -0.67 13.16 16 33 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 2.02 5.69 -2.38 -0.01 2.00 16 36 H 0.08 1.83 7.88 -2.39 -0.02 1.81 16 37 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.12 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.45 6.92 -2.39 -0.02 1.43 16 42 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 43 H 0.06 1.61 7.89 -2.39 -0.02 1.59 16 44 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -60.74 351.53 2.52 -58.22 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -0.43 Total: 43.67 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.55 Total: -8.68 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -3.58 Total: -115.87 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.74 2.52 -58.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.078 kcal (2) G-P(sol) polarization free energy of solvation -60.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds