Wall clock time and date at job start Tue Mar 31 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08990 * 109.47459 * 305.00373 * 3 2 1 5 5 C 1.52997 * 109.47157 * 185.00283 * 3 2 1 6 6 N 1.46496 * 109.47281 * 185.00530 * 5 3 2 7 7 C 1.34775 * 120.00181 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.81386 * 294.01450 * 9 7 6 11 11 C 1.53028 * 109.64188 * 173.48509 * 9 7 6 12 12 C 1.50064 * 110.14747 * 289.75569 * 11 9 7 13 13 C 1.29440 * 124.07779 * 342.86508 * 12 11 9 14 14 C 1.50076 * 124.07377 * 0.47352 * 13 12 11 15 15 C 1.53022 * 110.14422 * 342.86580 * 14 13 12 16 16 N 1.46504 * 109.46707 * 65.00329 * 3 2 1 17 17 C 1.36937 * 120.00070 * 274.99776 * 16 3 2 18 18 H 1.08005 * 119.99624 * 0.02562 * 17 16 3 19 19 C 1.38808 * 120.00024 * 180.02562 * 17 16 3 20 20 N 1.31621 * 119.99626 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00218 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47144 * 90.00059 * 21 19 17 23 23 H 1.48502 * 109.47270 * 210.00528 * 21 19 17 24 24 H 1.48506 * 109.46914 * 330.00445 * 21 19 17 25 25 H 1.08999 * 109.46921 * 299.99472 * 1 2 3 26 26 H 1.08998 * 109.47295 * 59.99582 * 1 2 3 27 27 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46738 * 240.00496 * 2 1 3 29 29 H 1.08998 * 109.47295 * 120.00418 * 2 1 3 30 30 H 1.09000 * 109.47510 * 65.00069 * 5 3 2 31 31 H 1.09013 * 109.47053 * 305.00036 * 5 3 2 32 32 H 0.97006 * 120.00081 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47086 * 180.52823 * 10 9 7 34 34 H 1.09001 * 109.46987 * 300.52529 * 10 9 7 35 35 H 1.08997 * 109.47112 * 60.52693 * 10 9 7 36 36 H 1.09006 * 109.35709 * 49.96049 * 11 9 7 37 37 H 1.08994 * 109.35936 * 169.68354 * 11 9 7 38 38 H 1.08006 * 117.96357 * 162.88991 * 12 11 9 39 39 H 1.08002 * 117.96876 * 180.44875 * 13 12 11 40 40 H 1.09004 * 109.35356 * 222.66285 * 14 13 12 41 41 H 1.08997 * 109.35581 * 103.07632 * 14 13 12 42 42 H 1.09001 * 109.64225 * 289.75227 * 15 14 13 43 43 H 1.09000 * 109.63855 * 169.12075 * 15 14 13 44 44 H 0.96998 * 119.99987 * 94.99937 * 16 3 2 45 45 H 0.96999 * 119.99205 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1482 -0.2574 9 6 5.8982 4.4747 0.0370 10 6 5.4189 5.3059 -1.1548 11 6 7.4280 4.4652 0.0754 12 6 7.9088 3.8846 1.3730 13 6 7.1692 3.7535 2.4271 14 6 5.7247 4.1544 2.4960 15 6 5.3841 5.0983 1.3407 16 7 1.6525 2.0974 1.2519 17 6 0.4157 2.6734 1.3690 18 1 -0.2742 2.6445 0.5385 19 6 0.0487 3.2944 2.5550 20 7 -1.1403 3.8475 2.6676 21 14 1.2417 3.3437 3.9915 22 1 2.0775 4.5676 3.8990 23 1 0.4807 3.3590 5.2666 24 1 2.1153 2.1434 3.9508 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8499 1.0377 -1.0961 31 1 3.9955 0.8310 0.6659 32 1 3.4410 3.5484 0.1310 33 1 5.8003 6.3231 -1.0652 34 1 5.7857 4.8604 -2.0795 35 1 4.3292 5.3264 -1.1686 36 1 7.8065 3.8643 -0.7516 37 1 7.7982 5.4858 -0.0206 38 1 8.9360 3.5560 1.4310 39 1 7.6196 3.3288 3.3122 40 1 5.5347 4.6593 3.4431 41 1 5.0992 3.2641 2.4316 42 1 5.8667 6.0625 1.5009 43 1 4.3038 5.2310 1.2823 44 1 2.2720 2.1230 1.9978 45 1 -1.3968 4.2811 3.4965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318529156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:45 Heat of formation + Delta-G solvation = -30.976679 kcal Electronic energy + Delta-G solvation = -23532.099659 eV Core-core repulsion = 20356.233773 eV Total energy + Delta-G solvation = -3175.865886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56513 -37.62318 -36.55573 -33.89900 -32.89031 -32.30081 -30.72718 -30.26614 -28.08694 -26.65168 -24.11299 -23.08932 -22.81694 -21.85453 -20.21706 -19.56342 -18.31181 -17.38198 -16.25096 -15.95949 -15.47153 -15.26521 -14.77078 -14.22128 -14.00773 -13.87636 -13.49002 -13.23507 -12.94778 -12.91261 -12.68420 -12.57254 -12.38422 -12.19099 -11.97089 -11.90627 -11.52826 -11.45694 -11.15692 -10.99851 -10.74597 -10.41128 -10.39332 -10.29957 -10.15062 -10.03701 -9.51909 -9.38170 -8.99135 -8.91570 -8.64451 -7.36449 -5.83975 -3.19727 2.41917 2.95049 3.30400 3.35596 3.40478 3.51713 4.52176 4.52853 4.67394 4.72193 5.11484 5.17636 5.20367 5.29060 5.36195 5.38838 5.44322 5.44844 5.63556 5.66399 5.72428 5.78479 5.81603 5.88820 5.90876 5.96564 6.04141 6.05055 6.10777 6.20740 6.24308 6.27787 6.47966 6.53596 6.58418 6.71211 6.84302 6.94346 7.04497 7.27491 7.89371 7.92183 8.34367 8.55427 9.12556 9.84997 10.04764 11.33693 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.006400 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.657927 B = 4373.877187 C = 5254.862371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.717 5.717 7 C 0.525 3.475 8 O -0.547 6.547 9 C -0.081 4.081 10 C -0.140 4.140 11 C -0.066 4.066 12 C -0.142 4.142 13 C -0.158 4.158 14 C -0.099 4.099 15 C -0.109 4.109 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.876 3.124 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.278 1.278 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.408 0.592 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.219 1.622 -5.309 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.012 4.012 6 N -0.369 5.369 7 C 0.310 3.690 8 O -0.425 6.425 9 C -0.085 4.085 10 C -0.197 4.197 11 C -0.103 4.103 12 C -0.160 4.160 13 C -0.177 4.177 14 C -0.136 4.136 15 C -0.147 4.147 16 N -0.389 5.389 17 C -0.370 4.370 18 H 0.112 0.888 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.707 3.293 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.204 1.204 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.517 1.050 -5.473 15.550 hybrid contribution 0.428 0.212 1.379 1.460 sum 14.945 1.262 -4.094 15.547 Atomic orbital electron populations 1.21777 0.95219 0.99685 1.03744 1.22041 0.97325 0.97942 1.00058 1.20539 0.89962 0.92887 0.90728 0.91991 1.21688 0.95391 0.82920 1.01245 1.46024 1.07274 1.10491 1.73085 1.20312 0.82311 0.90560 0.75788 1.90643 1.56065 1.46255 1.49512 1.20901 0.97020 0.93167 0.97362 1.21827 1.01969 0.99538 0.96393 1.20316 0.92369 1.00705 0.96894 1.21858 0.99447 1.00312 0.94402 1.21948 0.95808 1.01479 0.98422 1.20513 0.94357 0.99763 0.98925 1.21711 1.01700 0.98753 0.92524 1.42829 1.16890 1.67641 1.11589 1.19056 0.90836 1.27284 0.99862 0.88763 1.24645 0.96357 1.00400 0.97450 1.69691 1.19269 1.42124 1.26738 0.86678 0.81108 0.77860 0.83679 1.20886 1.21913 1.20390 0.89377 0.93889 0.94892 0.93604 0.92726 0.91642 0.92107 0.75524 0.91432 0.92082 0.91566 0.90129 0.90519 0.88174 0.88308 0.90782 0.90674 0.90654 0.90520 0.80561 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 2.95 2.59 -67.93 -0.18 2.78 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.80 5.23 -4.05 -0.02 1.78 16 6 N -0.72 -11.17 5.14 -60.29 -0.31 -11.48 16 7 C 0.52 8.21 4.74 -10.98 -0.05 8.16 16 8 O -0.55 -10.17 15.33 5.56 0.09 -10.09 16 9 C -0.08 -1.03 0.66 -155.44 -0.10 -1.13 16 10 C -0.14 -1.47 8.46 37.16 0.31 -1.15 16 11 C -0.07 -0.78 4.54 -28.18 -0.13 -0.91 16 12 C -0.14 -1.81 9.08 -35.90 -0.33 -2.14 16 13 C -0.16 -2.12 9.62 -35.90 -0.35 -2.47 16 14 C -0.10 -1.38 5.59 -28.17 -0.16 -1.54 16 15 C -0.11 -1.38 4.71 -26.52 -0.12 -1.50 16 16 N -0.75 -15.73 4.31 -53.43 -0.23 -15.96 16 17 C -0.24 -6.08 8.24 -15.06 -0.12 -6.21 16 18 H 0.09 2.57 7.55 -52.48 -0.40 2.18 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -27.63 13.97 55.49 0.78 -26.85 16 21 Si 0.88 20.95 27.73 -169.99 -4.71 16.23 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 25 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 32 H 0.41 6.38 7.32 -40.82 -0.30 6.08 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 37 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 38 H 0.10 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.10 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 42 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.08 1.01 7.55 -51.93 -0.39 0.62 16 44 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -29.58 350.10 -8.17 -37.76 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.91 Total: 13.99 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.15 Total: -8.87 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.24 Total: -54.29 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.58 -8.17 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.779 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds