Wall clock time and date at job start Tue Mar 31 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08990 * 109.47459 * 305.00373 * 3 2 1 5 5 C 1.52997 * 109.47157 * 185.00283 * 3 2 1 6 6 N 1.46496 * 109.47281 * 185.00530 * 5 3 2 7 7 C 1.34775 * 120.00181 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.81386 * 294.01450 * 9 7 6 11 11 C 1.53028 * 109.64188 * 173.48509 * 9 7 6 12 12 C 1.50064 * 110.14747 * 289.75569 * 11 9 7 13 13 C 1.29440 * 124.07779 * 342.86508 * 12 11 9 14 14 C 1.50076 * 124.07377 * 0.47352 * 13 12 11 15 15 C 1.53022 * 110.14422 * 342.86580 * 14 13 12 16 16 N 1.46504 * 109.46707 * 65.00329 * 3 2 1 17 17 C 1.36937 * 120.00070 * 274.99776 * 16 3 2 18 18 H 1.08005 * 119.99624 * 0.02562 * 17 16 3 19 19 C 1.38808 * 120.00024 * 180.02562 * 17 16 3 20 20 N 1.31621 * 119.99626 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00218 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47144 * 90.00059 * 21 19 17 23 23 H 1.48502 * 109.47270 * 210.00528 * 21 19 17 24 24 H 1.48506 * 109.46914 * 330.00445 * 21 19 17 25 25 H 1.08999 * 109.46921 * 299.99472 * 1 2 3 26 26 H 1.08998 * 109.47295 * 59.99582 * 1 2 3 27 27 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46738 * 240.00496 * 2 1 3 29 29 H 1.08998 * 109.47295 * 120.00418 * 2 1 3 30 30 H 1.09000 * 109.47510 * 65.00069 * 5 3 2 31 31 H 1.09013 * 109.47053 * 305.00036 * 5 3 2 32 32 H 0.97006 * 120.00081 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47086 * 180.52823 * 10 9 7 34 34 H 1.09001 * 109.46987 * 300.52529 * 10 9 7 35 35 H 1.08997 * 109.47112 * 60.52693 * 10 9 7 36 36 H 1.09006 * 109.35709 * 49.96049 * 11 9 7 37 37 H 1.08994 * 109.35936 * 169.68354 * 11 9 7 38 38 H 1.08006 * 117.96357 * 162.88991 * 12 11 9 39 39 H 1.08002 * 117.96876 * 180.44875 * 13 12 11 40 40 H 1.09004 * 109.35356 * 222.66285 * 14 13 12 41 41 H 1.08997 * 109.35581 * 103.07632 * 14 13 12 42 42 H 1.09001 * 109.64225 * 289.75227 * 15 14 13 43 43 H 1.09000 * 109.63855 * 169.12075 * 15 14 13 44 44 H 0.96998 * 119.99987 * 94.99937 * 16 3 2 45 45 H 0.96999 * 119.99205 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1482 -0.2574 9 6 5.8982 4.4747 0.0370 10 6 5.4189 5.3059 -1.1548 11 6 7.4280 4.4652 0.0754 12 6 7.9088 3.8846 1.3730 13 6 7.1692 3.7535 2.4271 14 6 5.7247 4.1544 2.4960 15 6 5.3841 5.0983 1.3407 16 7 1.6525 2.0974 1.2519 17 6 0.4157 2.6734 1.3690 18 1 -0.2742 2.6445 0.5385 19 6 0.0487 3.2944 2.5550 20 7 -1.1403 3.8475 2.6676 21 14 1.2417 3.3437 3.9915 22 1 2.0775 4.5676 3.8990 23 1 0.4807 3.3590 5.2666 24 1 2.1153 2.1434 3.9508 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8499 1.0377 -1.0961 31 1 3.9955 0.8310 0.6659 32 1 3.4410 3.5484 0.1310 33 1 5.8003 6.3231 -1.0652 34 1 5.7857 4.8604 -2.0795 35 1 4.3292 5.3264 -1.1686 36 1 7.8065 3.8643 -0.7516 37 1 7.7982 5.4858 -0.0206 38 1 8.9360 3.5560 1.4310 39 1 7.6196 3.3288 3.3122 40 1 5.5347 4.6593 3.4431 41 1 5.0992 3.2641 2.4316 42 1 5.8667 6.0625 1.5009 43 1 4.3038 5.2310 1.2823 44 1 2.2720 2.1230 1.9978 45 1 -1.3968 4.2811 3.4965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318529156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:45 Heat of formation + Delta-G solvation = -49.021228 kcal Electronic energy + Delta-G solvation = -23532.882129 eV Core-core repulsion = 20356.233773 eV Total energy + Delta-G solvation = -3176.648357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69836 -38.92509 -37.94211 -35.31966 -34.28323 -33.72225 -32.07696 -31.72235 -29.55742 -27.53244 -25.64420 -24.45535 -24.08618 -23.10780 -21.73269 -20.75605 -19.77985 -18.95397 -17.34521 -17.17557 -16.99354 -16.45731 -16.13143 -15.84661 -15.28715 -14.95905 -14.75506 -14.65626 -14.54571 -14.40809 -14.06198 -13.64110 -13.49052 -13.15896 -13.07612 -12.96983 -12.89119 -12.84695 -12.77783 -12.46857 -12.37249 -12.10379 -11.87948 -11.62844 -11.42844 -11.36660 -11.11436 -10.95030 -10.58722 -10.03527 -9.81771 -9.28468 -7.94720 -5.26431 1.39232 1.41507 1.42973 1.47250 1.73942 2.31429 2.52001 3.36390 3.55477 3.58277 3.68638 3.72639 3.89890 4.10981 4.20637 4.31530 4.36930 4.40498 4.44448 4.49888 4.55139 4.71227 4.73534 4.79622 4.81821 4.87623 4.90314 4.96402 5.06603 5.10639 5.12157 5.18577 5.19701 5.23456 5.29467 5.47066 5.57347 5.71575 5.73955 5.87979 6.05977 6.27819 6.63972 7.13658 7.31603 7.88522 8.07370 9.26280 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.006400 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.657927 B = 4373.877187 C = 5254.862371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.061 0.939 5 C 0.121 3.879 6 N -0.717 5.717 7 C 0.523 3.477 8 O -0.578 6.578 9 C -0.078 4.078 10 C -0.137 4.137 11 C -0.066 4.066 12 C -0.142 4.142 13 C -0.175 4.175 14 C -0.102 4.102 15 C -0.107 4.107 16 N -0.745 5.745 17 C -0.203 4.203 18 H 0.070 0.930 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.935 3.065 22 H -0.271 1.271 23 H -0.308 1.308 24 H -0.265 1.265 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.362 0.638 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.414 1.786 -6.191 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.368 5.368 7 C 0.310 3.690 8 O -0.458 6.458 9 C -0.081 4.081 10 C -0.194 4.194 11 C -0.103 4.103 12 C -0.160 4.160 13 C -0.193 4.193 14 C -0.139 4.139 15 C -0.145 4.145 16 N -0.388 5.388 17 C -0.334 4.334 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.764 3.236 22 H -0.197 1.197 23 H -0.236 1.236 24 H -0.191 1.191 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.754 1.190 -6.389 17.970 hybrid contribution -0.248 0.071 1.534 1.555 sum 16.506 1.261 -4.855 17.251 Atomic orbital electron populations 1.21683 0.96218 1.00429 1.01649 1.21973 0.96244 0.97162 1.01522 1.20676 0.91172 0.93217 0.88816 0.92122 1.21551 0.93759 0.83351 1.01679 1.46045 1.07570 1.10217 1.72982 1.20888 0.81787 0.91666 0.74631 1.90625 1.56644 1.47558 1.50997 1.20942 0.97563 0.91317 0.98280 1.21839 1.01773 1.00466 0.95353 1.20390 0.91655 1.02207 0.96063 1.22116 1.00004 0.99429 0.94480 1.22009 0.95598 1.02564 0.99169 1.20518 0.94448 0.99050 0.99866 1.21729 1.01431 0.99416 0.91911 1.42809 1.15367 1.67636 1.13002 1.18958 0.91356 1.24728 0.98375 0.91252 1.25247 0.97841 1.01623 1.00173 1.69850 1.21571 1.44693 1.27184 0.85712 0.79193 0.78678 0.79974 1.19663 1.23559 1.19086 0.93514 0.93788 0.92823 0.90373 0.92965 0.90214 0.92929 0.75519 0.88988 0.91895 0.91986 0.90818 0.87620 0.87053 0.87853 0.90392 0.93308 0.88414 0.91316 0.80535 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.18 71.98 0.66 -4.28 16 2 C -0.13 -4.02 5.61 30.59 0.17 -3.84 16 3 C 0.17 5.70 2.59 44.99 0.12 5.81 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.69 5.23 86.38 0.45 4.14 16 6 N -0.72 -21.36 5.14 -463.06 -2.38 -23.74 16 7 C 0.52 15.56 4.74 87.66 0.42 15.98 16 8 O -0.58 -20.74 15.33 -3.03 -0.05 -20.79 16 9 C -0.08 -1.78 0.66 -52.79 -0.03 -1.82 16 10 C -0.14 -2.48 8.46 71.98 0.61 -1.87 16 11 C -0.07 -1.39 4.54 29.66 0.13 -1.25 16 12 C -0.14 -3.32 9.08 27.04 0.25 -3.07 16 13 C -0.18 -4.42 9.62 27.04 0.26 -4.16 16 14 C -0.10 -2.71 5.59 29.66 0.17 -2.55 16 15 C -0.11 -2.47 4.71 30.73 0.14 -2.33 16 16 N -0.74 -30.90 4.31 -322.95 -1.39 -32.29 16 17 C -0.20 -10.36 8.24 84.03 0.69 -9.67 16 18 H 0.07 3.87 7.55 -2.91 -0.02 3.85 16 19 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 20 N -0.98 -59.95 13.97 21.65 0.30 -59.65 16 21 Si 0.93 43.71 27.73 68.60 1.90 45.62 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 24 H -0.27 -11.67 6.52 99.48 0.65 -11.02 16 25 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.41 12.27 7.32 -92.70 -0.68 11.59 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 36 H 0.07 1.69 7.67 -2.38 -0.02 1.67 16 37 H 0.11 1.62 8.10 -2.39 -0.02 1.61 16 38 H 0.11 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.10 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.05 1.54 7.33 -2.39 -0.02 1.52 16 42 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 43 H 0.07 1.69 7.55 -2.39 -0.02 1.67 16 44 H 0.36 15.19 5.66 -92.71 -0.52 14.67 16 45 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -64.43 350.10 2.59 -61.84 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.30 Total: 40.64 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.50 Total: -11.62 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -3.47 Total: -115.68 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.62 kcal Total: -64.43 2.59 -61.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318529156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.816 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds