Wall clock time and date at job start Tue Mar 31 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46505 * 109.47275 * 300.00450 * 3 2 1 5 5 C 1.36932 * 119.99687 * 179.97438 * 4 3 2 6 6 H 1.07993 * 120.00847 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99672 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47279 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46726 * 209.99816 * 9 7 5 12 12 H 1.48494 * 109.47167 * 329.99837 * 9 7 5 13 13 N 1.46502 * 109.46852 * 240.00807 * 2 1 3 14 14 C 1.34777 * 119.99756 * 174.51694 * 13 2 1 15 15 O 1.21275 * 120.00419 * 5.19166 * 14 13 2 16 16 C 1.50708 * 119.99722 * 185.20009 * 14 13 2 17 17 C 1.53000 * 109.47069 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46893 * 179.97438 * 17 16 14 19 19 C 1.53002 * 117.49746 * 243.74368 * 18 17 16 20 20 C 1.53005 * 117.49397 * 175.08658 * 18 17 16 21 21 C 1.52996 * 109.47741 * 120.00477 * 2 1 3 22 22 C 1.52994 * 117.50205 * 122.32454 * 21 2 1 23 23 C 1.52997 * 117.49821 * 53.66443 * 21 2 1 24 24 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46886 * 299.99536 * 1 2 3 26 26 H 1.08997 * 109.47660 * 59.99551 * 1 2 3 27 27 H 1.09001 * 109.46845 * 60.00438 * 3 2 1 28 28 H 1.08999 * 109.47212 * 180.02562 * 3 2 1 29 29 H 0.97002 * 119.99759 * 0.02562 * 4 3 2 30 30 H 0.97006 * 119.99572 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00051 * 354.78299 * 13 2 1 32 32 H 1.09000 * 109.46705 * 299.99547 * 16 14 13 33 33 H 1.08995 * 109.47500 * 59.99317 * 16 14 13 34 34 H 1.09005 * 109.47084 * 299.99979 * 17 16 14 35 35 H 1.09000 * 109.46853 * 59.99715 * 17 16 14 36 36 H 1.08990 * 115.55138 * 29.42160 * 18 17 16 37 37 H 1.08995 * 117.50033 * 0.02562 * 19 18 17 38 38 H 1.09004 * 117.49839 * 145.02346 * 19 18 17 39 39 H 1.08998 * 117.49551 * 214.98045 * 20 18 17 40 40 H 1.09000 * 117.50220 * 0.02562 * 20 18 17 41 41 H 1.09001 * 115.54802 * 267.99900 * 21 2 1 42 42 H 1.08999 * 117.49946 * 0.02562 * 22 21 2 43 43 H 1.08997 * 117.49890 * 145.02226 * 22 21 2 44 44 H 1.09003 * 117.49959 * 214.98561 * 23 21 2 45 45 H 1.09001 * 117.49804 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4443 -1.4125 6 1 2.5029 3.9692 -0.7017 7 6 1.4188 4.0990 -2.5456 8 7 0.6624 3.4591 -3.4122 9 14 1.8701 5.8874 -2.8411 10 1 3.1325 5.9572 -3.6201 11 1 0.7819 6.5533 -3.6012 12 1 2.0546 6.5733 -1.5371 13 7 2.0183 -0.6905 -1.1963 14 6 3.3383 -0.7179 -1.4669 15 8 4.1297 -0.2537 -0.6738 16 6 3.8309 -1.3252 -2.7552 17 6 5.3567 -1.2284 -2.8140 18 6 5.8568 -1.8456 -4.1217 19 6 6.7432 -3.0887 -4.0225 20 6 7.3532 -1.7434 -4.4241 21 6 2.0401 -0.7213 1.2491 22 6 2.9598 -1.9265 1.0429 23 6 1.5176 -2.1352 1.5113 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 0.9936 1.6619 -1.8344 30 1 0.3384 3.9167 -4.2038 31 1 1.3912 -1.1246 -1.7957 32 1 3.5308 -2.3721 -2.8014 33 1 3.4002 -0.7863 -3.5991 34 1 5.6564 -0.1814 -2.7680 35 1 5.7877 -1.7672 -1.9702 36 1 5.1678 -1.7845 -4.9640 37 1 6.9697 -3.4671 -3.0258 38 1 6.6375 -3.8455 -4.7999 39 1 7.6485 -1.6156 -5.4655 40 1 7.9814 -1.2369 -3.6913 41 1 2.2292 -0.0861 2.1145 42 1 3.2018 -2.2053 0.0173 43 1 3.7538 -2.0844 1.7728 44 1 1.3633 -2.4303 2.5492 45 1 0.8107 -2.5516 0.7937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318685073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:45 Heat of formation + Delta-G solvation = 22.965692 kcal Electronic energy + Delta-G solvation = -23018.422414 eV Core-core repulsion = 19844.895644 eV Total energy + Delta-G solvation = -3173.526769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25801 -37.84885 -36.86094 -34.91525 -33.26901 -32.14252 -31.02106 -29.45833 -26.01448 -24.89237 -23.61613 -22.41679 -22.03935 -21.31462 -20.59494 -20.06375 -18.87387 -17.24589 -16.60595 -16.10878 -15.54974 -15.28503 -14.86663 -14.35829 -14.26524 -13.87781 -13.25906 -13.15540 -13.07435 -12.78556 -12.22039 -12.08866 -11.94555 -11.70751 -11.61626 -11.34604 -11.17265 -11.07313 -10.96794 -10.82191 -10.73514 -10.67531 -10.30088 -10.15600 -10.01762 -9.84394 -9.75807 -9.61979 -9.11637 -8.70662 -8.45824 -6.79232 -5.70554 -2.96037 3.18108 3.47782 3.53091 3.54513 3.59381 3.79270 4.09849 4.64639 4.67988 4.88298 4.92401 4.93052 5.07823 5.17979 5.23542 5.32365 5.45227 5.50449 5.57560 5.60519 5.64762 5.68531 5.76720 5.82343 5.83963 5.88695 6.05054 6.06192 6.06515 6.10060 6.22821 6.28947 6.35056 6.35805 6.45071 6.47586 6.66612 6.69681 7.00958 7.24131 7.78164 8.03071 8.49593 8.79493 9.60903 10.19717 10.55668 11.52868 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.006191 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.830923 B = 4521.753443 C = 6531.182567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.227 4.227 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.938 5.938 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.522 3.478 15 O -0.528 6.528 16 C -0.139 4.139 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.184 4.184 20 C -0.182 4.182 21 C -0.142 4.142 22 C -0.156 4.156 23 C -0.188 4.188 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.051 0.949 29 H 0.381 0.619 30 H 0.253 0.747 31 H 0.394 0.606 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -15.899 2.569 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.114 3.886 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.309 3.691 15 O -0.404 6.404 16 C -0.179 4.179 17 C -0.108 4.108 18 C -0.168 4.168 19 C -0.221 4.221 20 C -0.219 4.219 21 C -0.161 4.161 22 C -0.193 4.193 23 C -0.225 4.225 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.216 0.784 30 H 0.062 0.938 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.250 -15.366 3.175 16.546 hybrid contribution -0.320 0.726 -0.812 1.136 sum 4.929 -14.640 2.363 15.627 Atomic orbital electron populations 1.21977 0.93345 1.01215 1.03927 1.20025 0.93530 0.92522 0.82554 1.21094 0.98853 0.87903 0.90830 1.42254 1.61190 1.10434 1.23147 1.19239 1.24774 0.87659 1.04226 0.91425 1.24663 1.00857 0.98143 0.97521 1.69650 1.39896 1.36005 1.13195 0.86213 0.77361 0.85181 0.77639 1.21890 1.21904 1.20858 1.46023 1.07500 1.56887 1.26536 1.20313 0.82312 0.78872 0.87616 1.90663 1.54840 1.45985 1.48931 1.21663 0.97569 1.01773 0.96922 1.20880 0.93321 1.01960 0.94688 1.22383 0.93335 1.01197 0.99910 1.23043 1.05163 0.91280 1.02609 1.22957 0.96229 1.00586 1.02112 1.22516 1.04018 0.90173 0.99418 1.22891 0.92304 1.02061 1.02043 1.22985 0.97896 1.00192 1.01389 0.92976 0.91194 0.90807 0.96220 0.93114 0.78436 0.93766 0.77251 0.89738 0.88684 0.90546 0.91381 0.87771 0.88915 0.89197 0.89025 0.88772 0.87669 0.88936 0.89771 0.89532 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.18 37.16 0.30 -1.91 16 2 C 0.20 3.30 0.55 -131.82 -0.07 3.23 16 3 C 0.14 3.05 4.83 -4.04 -0.02 3.03 16 4 N -0.73 -18.47 5.18 -59.91 -0.31 -18.78 16 5 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.27 13.06 55.49 0.72 -27.55 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.96 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.72 -11.00 4.19 -47.61 -0.20 -11.19 16 14 C 0.52 8.59 5.09 -10.98 -0.06 8.54 16 15 O -0.53 -10.39 11.92 5.56 0.07 -10.32 16 16 C -0.14 -1.84 5.66 -27.88 -0.16 -1.99 16 17 C -0.07 -0.94 4.79 -26.73 -0.13 -1.07 16 18 C -0.15 -1.69 5.73 -90.62 -0.52 -2.21 16 19 C -0.18 -1.79 10.18 -26.69 -0.27 -2.06 16 20 C -0.18 -1.90 10.25 -26.69 -0.27 -2.17 16 21 C -0.14 -2.11 4.81 -90.63 -0.44 -2.55 16 22 C -0.16 -2.18 8.28 -26.70 -0.22 -2.40 16 23 C -0.19 -2.28 9.68 -26.70 -0.26 -2.54 16 24 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.23 5.96 -51.93 -0.31 0.92 16 29 H 0.38 9.91 6.35 -40.82 -0.26 9.65 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 5.13 8.48 -40.82 -0.35 4.78 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 36 H 0.10 1.12 8.07 -51.93 -0.42 0.71 16 37 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.11 1.60 8.06 -51.93 -0.42 1.18 16 42 H 0.09 1.34 5.12 -51.93 -0.27 1.08 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.02 7.21 -51.93 -0.37 0.65 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -32.07 355.17 -9.45 -41.52 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.70 Total: 14.40 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.36 Total: -11.38 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.22 Total: -57.53 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.07 -9.45 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318685073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.487 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds