Wall clock time and date at job start Tue Mar 31 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46505 * 109.47275 * 300.00450 * 3 2 1 5 5 C 1.36932 * 119.99687 * 179.97438 * 4 3 2 6 6 H 1.07993 * 120.00847 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99672 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47279 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46726 * 209.99816 * 9 7 5 12 12 H 1.48494 * 109.47167 * 329.99837 * 9 7 5 13 13 N 1.46502 * 109.46852 * 240.00807 * 2 1 3 14 14 C 1.34777 * 119.99756 * 174.51694 * 13 2 1 15 15 O 1.21275 * 120.00419 * 5.19166 * 14 13 2 16 16 C 1.50708 * 119.99722 * 185.20009 * 14 13 2 17 17 C 1.53000 * 109.47069 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46893 * 179.97438 * 17 16 14 19 19 C 1.53002 * 117.49746 * 243.74368 * 18 17 16 20 20 C 1.53005 * 117.49397 * 175.08658 * 18 17 16 21 21 C 1.52996 * 109.47741 * 120.00477 * 2 1 3 22 22 C 1.52994 * 117.50205 * 122.32454 * 21 2 1 23 23 C 1.52997 * 117.49821 * 53.66443 * 21 2 1 24 24 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46886 * 299.99536 * 1 2 3 26 26 H 1.08997 * 109.47660 * 59.99551 * 1 2 3 27 27 H 1.09001 * 109.46845 * 60.00438 * 3 2 1 28 28 H 1.08999 * 109.47212 * 180.02562 * 3 2 1 29 29 H 0.97002 * 119.99759 * 0.02562 * 4 3 2 30 30 H 0.97006 * 119.99572 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00051 * 354.78299 * 13 2 1 32 32 H 1.09000 * 109.46705 * 299.99547 * 16 14 13 33 33 H 1.08995 * 109.47500 * 59.99317 * 16 14 13 34 34 H 1.09005 * 109.47084 * 299.99979 * 17 16 14 35 35 H 1.09000 * 109.46853 * 59.99715 * 17 16 14 36 36 H 1.08990 * 115.55138 * 29.42160 * 18 17 16 37 37 H 1.08995 * 117.50033 * 0.02562 * 19 18 17 38 38 H 1.09004 * 117.49839 * 145.02346 * 19 18 17 39 39 H 1.08998 * 117.49551 * 214.98045 * 20 18 17 40 40 H 1.09000 * 117.50220 * 0.02562 * 20 18 17 41 41 H 1.09001 * 115.54802 * 267.99900 * 21 2 1 42 42 H 1.08999 * 117.49946 * 0.02562 * 22 21 2 43 43 H 1.08997 * 117.49890 * 145.02226 * 22 21 2 44 44 H 1.09003 * 117.49959 * 214.98561 * 23 21 2 45 45 H 1.09001 * 117.49804 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4443 -1.4125 6 1 2.5029 3.9692 -0.7017 7 6 1.4188 4.0990 -2.5456 8 7 0.6624 3.4591 -3.4122 9 14 1.8701 5.8874 -2.8411 10 1 3.1325 5.9572 -3.6201 11 1 0.7819 6.5533 -3.6012 12 1 2.0546 6.5733 -1.5371 13 7 2.0183 -0.6905 -1.1963 14 6 3.3383 -0.7179 -1.4669 15 8 4.1297 -0.2537 -0.6738 16 6 3.8309 -1.3252 -2.7552 17 6 5.3567 -1.2284 -2.8140 18 6 5.8568 -1.8456 -4.1217 19 6 6.7432 -3.0887 -4.0225 20 6 7.3532 -1.7434 -4.4241 21 6 2.0401 -0.7213 1.2491 22 6 2.9598 -1.9265 1.0429 23 6 1.5176 -2.1352 1.5113 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 0.9936 1.6619 -1.8344 30 1 0.3384 3.9167 -4.2038 31 1 1.3912 -1.1246 -1.7957 32 1 3.5308 -2.3721 -2.8014 33 1 3.4002 -0.7863 -3.5991 34 1 5.6564 -0.1814 -2.7680 35 1 5.7877 -1.7672 -1.9702 36 1 5.1678 -1.7845 -4.9640 37 1 6.9697 -3.4671 -3.0258 38 1 6.6375 -3.8455 -4.7999 39 1 7.6485 -1.6156 -5.4655 40 1 7.9814 -1.2369 -3.6913 41 1 2.2292 -0.0861 2.1145 42 1 3.2018 -2.2053 0.0173 43 1 3.7538 -2.0844 1.7728 44 1 1.3633 -2.4303 2.5492 45 1 0.8107 -2.5516 0.7937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318685073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:45 Heat of formation + Delta-G solvation = 3.573397 kcal Electronic energy + Delta-G solvation = -23019.263327 eV Core-core repulsion = 19844.895644 eV Total energy + Delta-G solvation = -3174.367682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56299 -38.89980 -37.99090 -36.58340 -34.87515 -33.50800 -32.62275 -31.05134 -27.66100 -26.12040 -25.38204 -23.20957 -23.08496 -22.91022 -21.68375 -21.15152 -20.24579 -19.26021 -17.86023 -17.36437 -16.92933 -16.49949 -16.18857 -15.99343 -15.40996 -15.29792 -15.00334 -14.66466 -14.36440 -14.21049 -13.54414 -13.46298 -13.37404 -13.01724 -12.88816 -12.79729 -12.46723 -12.34378 -12.26390 -12.20712 -12.12529 -12.05499 -11.96452 -11.75593 -11.24506 -11.14959 -10.99834 -10.92777 -10.76089 -10.29591 -9.81897 -8.92531 -7.95302 -5.20805 1.44094 1.45608 1.53895 1.88128 2.37685 2.54934 2.93607 3.00369 3.38024 3.69241 3.73817 3.89503 4.01497 4.03055 4.07693 4.12375 4.19260 4.31443 4.39085 4.41338 4.46130 4.58973 4.66772 4.76194 4.80916 4.83130 4.91236 4.96149 4.98888 5.06609 5.08710 5.12050 5.19148 5.22573 5.29518 5.32568 5.34207 5.38421 5.45166 5.47347 5.81394 6.27984 6.79313 7.35274 7.53106 8.10166 8.39443 9.27715 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.006191 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.830923 B = 4521.753443 C = 6531.182567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.208 3.792 3 C 0.143 3.857 4 N -0.728 5.728 5 C -0.243 4.243 6 H 0.060 0.940 7 C -0.067 4.067 8 N -0.963 5.963 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.711 5.711 14 C 0.513 3.487 15 O -0.566 6.566 16 C -0.131 4.131 17 C -0.064 4.064 18 C -0.162 4.162 19 C -0.167 4.167 20 C -0.189 4.189 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.152 4.152 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.013 0.987 28 H 0.023 0.977 29 H 0.378 0.622 30 H 0.251 0.749 31 H 0.408 0.592 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -17.749 2.352 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.121 3.879 3 C 0.015 3.985 4 N -0.372 5.372 5 C -0.375 4.375 6 H 0.078 0.922 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.796 3.204 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.363 5.363 14 C 0.302 3.698 15 O -0.445 6.445 16 C -0.171 4.171 17 C -0.102 4.102 18 C -0.180 4.180 19 C -0.204 4.204 20 C -0.226 4.226 21 C -0.183 4.183 22 C -0.200 4.200 23 C -0.189 4.189 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.212 0.788 30 H 0.060 0.940 31 H 0.243 0.757 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.685 -17.238 2.968 18.108 hybrid contribution -0.099 1.315 -0.695 1.490 sum 4.586 -15.924 2.273 16.726 Atomic orbital electron populations 1.21904 0.91853 1.03149 1.02689 1.19814 0.94439 0.89600 0.84024 1.21118 0.97126 0.91251 0.88992 1.42303 1.61005 1.09697 1.24161 1.19516 1.24552 0.89193 1.04265 0.92174 1.25384 1.01182 1.02008 0.97407 1.69775 1.40758 1.37362 1.13455 0.85247 0.76885 0.80669 0.77624 1.21800 1.21548 1.20018 1.45971 1.07554 1.56329 1.26446 1.20936 0.82314 0.78317 0.88249 1.90649 1.55815 1.47639 1.50389 1.21664 0.97214 1.03533 0.94681 1.20753 0.93581 0.99888 0.95980 1.22313 0.93953 1.02823 0.98881 1.23112 1.03010 0.90930 1.03318 1.23040 0.95475 1.01452 1.02666 1.22387 1.06317 0.91311 0.98288 1.22879 0.93587 1.01616 1.01916 1.23074 0.96412 0.96548 1.02881 0.89375 0.91163 0.93268 0.96892 0.95941 0.78822 0.93974 0.75676 0.86128 0.89013 0.94129 0.91819 0.87070 0.88703 0.87312 0.87874 0.89560 0.88639 0.89439 0.89946 0.87573 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.18 71.98 0.59 -3.38 16 2 C 0.21 6.80 0.55 3.60 0.00 6.80 16 3 C 0.14 6.35 4.83 86.38 0.42 6.77 16 4 N -0.73 -38.01 5.18 -343.44 -1.78 -39.79 16 5 C -0.24 -14.27 9.99 84.04 0.84 -13.43 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.96 -58.49 13.06 21.65 0.28 -58.20 16 9 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.71 -21.30 4.19 -422.92 -1.77 -23.07 16 14 C 0.51 16.97 5.09 87.66 0.45 17.42 16 15 O -0.57 -23.05 11.92 -3.01 -0.04 -23.08 16 16 C -0.13 -3.37 5.66 29.85 0.17 -3.20 16 17 C -0.06 -1.73 4.79 30.59 0.15 -1.58 16 18 C -0.16 -3.47 5.73 -10.79 -0.06 -3.53 16 19 C -0.17 -2.90 10.18 30.62 0.31 -2.59 16 20 C -0.19 -3.78 10.25 30.62 0.31 -3.47 16 21 C -0.16 -4.71 4.81 -10.80 -0.05 -4.77 16 22 C -0.16 -4.34 8.28 30.62 0.25 -4.08 16 23 C -0.15 -3.22 9.68 30.62 0.30 -2.92 16 24 H 0.09 1.88 6.92 -2.39 -0.02 1.87 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.66 6.86 -2.39 -0.02 1.65 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.02 1.15 5.96 -2.39 -0.01 1.13 16 29 H 0.38 20.03 6.35 -92.71 -0.59 19.44 16 30 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 31 H 0.41 9.93 8.48 -92.71 -0.79 9.15 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.36 8.10 -2.38 -0.02 1.34 16 35 H 0.06 1.74 7.83 -2.39 -0.02 1.72 16 36 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.10 2.91 8.06 -2.39 -0.02 2.89 16 42 H 0.09 2.42 5.12 -2.39 -0.01 2.41 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.11 1.93 7.21 -2.39 -0.02 1.91 16 Total: -1.00 -70.42 355.17 2.47 -67.95 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -0.39 Total: 42.00 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.14 Total: -15.44 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -3.27 Total: -121.06 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -70.42 2.47 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318685073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.522 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds