Wall clock time and date at job start Tue Mar 31 2020 02:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99836 * 2 1 4 4 C 1.53005 * 109.46744 * 125.00269 * 3 2 1 5 5 C 1.53001 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46982 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00153 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00252 * 185.12397 * 8 6 5 10 10 C 1.53007 * 109.47256 * 298.24036 * 9 8 6 11 11 C 1.52998 * 109.47084 * 58.24140 * 9 8 6 12 12 N 1.46494 * 109.47223 * 59.99956 * 11 9 8 13 13 C 1.36938 * 120.00039 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47045 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46897 * 120.00192 * 17 15 13 20 20 H 1.48499 * 109.47319 * 240.00024 * 17 15 13 21 21 C 1.52995 * 109.47073 * 178.24230 * 9 8 6 22 22 C 1.53000 * 117.49829 * 132.09347 * 21 9 8 23 23 C 1.52998 * 117.50270 * 63.43472 * 21 9 8 24 24 H 1.07995 * 119.99933 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99883 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47705 * 5.00419 * 3 2 1 28 28 H 1.09000 * 109.46945 * 244.99880 * 3 2 1 29 29 H 1.09005 * 109.46892 * 59.99780 * 4 3 2 30 30 H 1.08994 * 109.47354 * 299.99910 * 4 3 2 31 31 H 1.08993 * 109.47089 * 60.00562 * 5 4 3 32 32 H 1.09000 * 109.47063 * 299.99744 * 5 4 3 33 33 H 0.96996 * 119.99515 * 5.12907 * 8 6 5 34 34 H 1.09001 * 109.46988 * 300.00216 * 10 9 8 35 35 H 1.08997 * 109.47303 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46816 * 60.00060 * 10 9 8 37 37 H 1.08997 * 109.47250 * 180.02562 * 11 9 8 38 38 H 1.09004 * 109.47258 * 300.00105 * 11 9 8 39 39 H 0.97002 * 120.00037 * 359.97438 * 12 11 9 40 40 H 0.97000 * 119.99845 * 180.02562 * 16 15 13 41 41 H 1.09001 * 115.54848 * 277.76138 * 21 9 8 42 42 H 1.08996 * 117.50453 * 0.02562 * 22 21 9 43 43 H 1.09000 * 117.49801 * 145.02120 * 22 21 9 44 44 H 1.09000 * 117.50110 * 214.98522 * 23 21 9 45 45 H 1.09007 * 117.49577 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8005 2.6578 1.1813 6 6 4.7579 2.6850 2.3448 7 8 4.8214 1.7383 3.1002 8 7 5.5436 3.7614 2.5459 9 6 6.5527 3.7437 3.6079 10 6 5.8637 3.5725 4.9633 11 6 7.5173 2.5790 3.3754 12 7 8.1769 2.7429 2.0777 13 6 9.0899 1.8154 1.6517 14 1 9.3232 0.9629 2.2722 15 6 9.7146 1.9705 0.4217 16 7 9.4298 3.0093 -0.3347 17 14 10.9605 0.7057 -0.1591 18 1 11.1017 -0.3577 0.8678 19 1 10.4962 0.1031 -1.4344 20 1 12.2734 1.3658 -0.3726 21 6 7.3308 5.0609 3.5941 22 6 7.5245 5.7809 4.9301 23 6 6.5525 6.3444 3.8906 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5064 1.0920 30 1 2.4774 1.2355 2.1130 31 1 3.0959 3.4845 1.2708 32 1 4.3584 2.7548 0.2499 33 1 5.4409 4.5479 1.9876 34 1 5.1765 4.4022 5.1289 35 1 6.6144 3.5588 5.7534 36 1 5.3093 2.6340 4.9731 37 1 8.2677 2.5655 4.1657 38 1 6.9629 1.6406 3.3852 39 1 7.9671 3.5085 1.5202 40 1 9.8660 3.1174 -1.1943 41 1 8.1416 5.1203 2.8681 42 1 7.0981 5.3160 5.8190 43 1 8.4627 6.3144 5.0829 44 1 6.8515 7.2482 3.3598 45 1 5.4859 6.2503 4.0951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318712665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:48 Heat of formation + Delta-G solvation = 6.404854 kcal Electronic energy + Delta-G solvation = -22628.291221 eV Core-core repulsion = 19454.046320 eV Total energy + Delta-G solvation = -3174.244901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.01324 -37.88163 -35.92344 -34.59857 -33.36218 -32.38299 -31.03717 -29.63744 -27.04070 -25.77964 -23.68758 -22.40972 -22.02799 -21.90135 -19.99545 -19.58771 -18.69617 -17.12901 -16.98124 -15.81494 -15.62326 -15.18652 -14.90611 -14.47673 -14.22796 -13.75313 -13.57213 -13.25841 -13.15592 -12.75017 -12.44032 -12.11598 -12.06708 -11.84473 -11.67262 -11.52176 -11.25632 -11.01747 -10.90045 -10.80701 -10.76696 -10.70696 -10.58504 -10.14179 -10.03474 -9.77490 -9.63769 -9.40510 -9.14923 -8.74859 -8.47645 -6.80953 -5.71644 -2.97347 2.21342 3.14373 3.46101 3.50801 3.52869 3.54888 4.15514 4.64919 4.76516 4.83440 4.97776 5.05409 5.12687 5.22008 5.25120 5.35002 5.39792 5.50896 5.55804 5.61101 5.65029 5.75746 5.79141 5.82865 5.84590 5.94194 6.00510 6.10488 6.24749 6.26559 6.29625 6.32483 6.43928 6.50427 6.57068 6.64120 6.71427 6.75291 6.97066 7.19765 7.77652 8.03922 8.48280 8.75881 9.59795 10.18456 10.54640 11.51691 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.005768 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.333272 B = 4853.051778 C = 6978.926273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.097 4.097 4 C -0.097 4.097 5 C -0.141 4.141 6 C 0.522 3.478 7 O -0.539 6.539 8 N -0.713 5.713 9 C 0.202 3.798 10 C -0.162 4.162 11 C 0.144 3.856 12 N -0.726 5.726 13 C -0.228 4.228 14 H 0.069 0.931 15 C -0.016 4.016 16 N -0.937 5.937 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.149 4.149 22 C -0.174 4.174 23 C -0.183 4.183 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.396 0.604 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.022 0.978 38 H 0.045 0.955 39 H 0.382 0.618 40 H 0.252 0.748 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.486 4.505 5.064 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.162 4.162 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.309 3.691 7 O -0.417 6.417 8 N -0.363 5.363 9 C 0.116 3.884 10 C -0.220 4.220 11 C 0.016 3.984 12 N -0.370 5.370 13 C -0.360 4.360 14 H 0.087 0.913 15 C -0.212 4.212 16 N -0.586 5.586 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.167 4.167 22 C -0.211 4.211 23 C -0.220 4.220 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.230 0.770 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.216 0.784 40 H 0.062 0.938 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.316 3.654 5.613 15.805 hybrid contribution 0.757 0.019 -0.988 1.245 sum -13.558 3.673 4.625 14.789 Atomic orbital electron populations 1.23796 0.95960 1.01549 1.02905 1.23025 0.95981 0.98861 0.98313 1.20824 0.98173 0.95104 0.99311 1.21240 0.97508 0.96841 0.97888 1.21682 0.98172 0.99876 0.98422 1.20437 0.80813 0.82118 0.85774 1.90613 1.68601 1.35417 1.47033 1.45946 1.36618 1.17575 1.36185 1.19995 0.87234 0.94344 0.86813 1.22288 1.00707 1.03027 0.96028 1.21047 0.92507 0.95420 0.89469 1.42250 1.48754 1.28830 1.17174 1.19297 1.14123 1.02164 1.00380 0.91343 1.24665 1.00890 0.98298 0.97314 1.69657 1.46731 1.29818 1.12443 0.86147 0.81139 0.80802 0.78366 1.20632 1.22021 1.22014 1.22580 1.02370 0.91100 1.00679 1.23054 1.00973 1.03726 0.93369 1.22938 0.97618 0.97463 1.04007 0.88782 0.88787 0.87334 0.91693 0.90728 0.90822 0.91431 0.89703 0.88614 0.77027 0.93131 0.91856 0.90258 0.95991 0.93686 0.78404 0.93803 0.86061 0.88296 0.88959 0.88992 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.94 14.32 29.01 0.42 -1.52 16 2 C -0.14 -1.52 9.52 -36.03 -0.34 -1.87 16 3 C -0.10 -1.04 5.66 -27.88 -0.16 -1.19 16 4 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 5 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 6 C 0.52 8.71 7.23 -10.99 -0.08 8.63 16 7 O -0.54 -10.73 12.22 5.55 0.07 -10.66 16 8 N -0.71 -11.15 4.73 -47.61 -0.23 -11.38 16 9 C 0.20 3.38 0.54 -131.82 -0.07 3.30 16 10 C -0.16 -2.42 7.06 37.16 0.26 -2.16 16 11 C 0.14 3.11 4.94 -4.05 -0.02 3.09 16 12 N -0.73 -18.46 5.03 -59.91 -0.30 -18.76 16 13 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 16 N -0.94 -28.14 13.06 55.49 0.72 -27.42 16 17 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 C -0.15 -2.28 4.86 -90.62 -0.44 -2.72 16 22 C -0.17 -2.22 9.63 -26.70 -0.26 -2.47 16 23 C -0.18 -2.21 9.72 -26.70 -0.26 -2.47 16 24 H 0.09 0.79 8.06 -52.49 -0.42 0.36 16 25 H 0.09 0.81 7.84 -52.48 -0.41 0.39 16 26 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.12 8.10 -51.93 -0.42 0.69 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.48 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.40 5.38 8.38 -40.82 -0.34 5.04 16 34 H 0.05 0.66 7.00 -51.93 -0.36 0.30 16 35 H 0.06 0.88 6.81 -51.93 -0.35 0.53 16 36 H 0.08 1.34 6.13 -51.93 -0.32 1.02 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 1.09 6.22 -51.93 -0.32 0.76 16 39 H 0.38 9.93 6.63 -40.82 -0.27 9.66 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 2.25 7.09 -51.93 -0.37 1.88 16 42 H 0.10 1.18 5.88 -51.93 -0.31 0.87 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.02 7.39 -51.93 -0.38 0.63 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -32.01 359.53 -8.43 -40.44 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.61 Total: 14.51 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.48 Total: -10.02 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.20 Total: -57.56 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.01 -8.43 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.843 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds