Wall clock time and date at job start Tue Mar 31 2020 02:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99836 * 2 1 4 4 C 1.53005 * 109.46744 * 125.00269 * 3 2 1 5 5 C 1.53001 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46982 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00153 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00252 * 185.12397 * 8 6 5 10 10 C 1.53007 * 109.47256 * 298.24036 * 9 8 6 11 11 C 1.52998 * 109.47084 * 58.24140 * 9 8 6 12 12 N 1.46494 * 109.47223 * 59.99956 * 11 9 8 13 13 C 1.36938 * 120.00039 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47045 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46897 * 120.00192 * 17 15 13 20 20 H 1.48499 * 109.47319 * 240.00024 * 17 15 13 21 21 C 1.52995 * 109.47073 * 178.24230 * 9 8 6 22 22 C 1.53000 * 117.49829 * 132.09347 * 21 9 8 23 23 C 1.52998 * 117.50270 * 63.43472 * 21 9 8 24 24 H 1.07995 * 119.99933 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99883 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47705 * 5.00419 * 3 2 1 28 28 H 1.09000 * 109.46945 * 244.99880 * 3 2 1 29 29 H 1.09005 * 109.46892 * 59.99780 * 4 3 2 30 30 H 1.08994 * 109.47354 * 299.99910 * 4 3 2 31 31 H 1.08993 * 109.47089 * 60.00562 * 5 4 3 32 32 H 1.09000 * 109.47063 * 299.99744 * 5 4 3 33 33 H 0.96996 * 119.99515 * 5.12907 * 8 6 5 34 34 H 1.09001 * 109.46988 * 300.00216 * 10 9 8 35 35 H 1.08997 * 109.47303 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46816 * 60.00060 * 10 9 8 37 37 H 1.08997 * 109.47250 * 180.02562 * 11 9 8 38 38 H 1.09004 * 109.47258 * 300.00105 * 11 9 8 39 39 H 0.97002 * 120.00037 * 359.97438 * 12 11 9 40 40 H 0.97000 * 119.99845 * 180.02562 * 16 15 13 41 41 H 1.09001 * 115.54848 * 277.76138 * 21 9 8 42 42 H 1.08996 * 117.50453 * 0.02562 * 22 21 9 43 43 H 1.09000 * 117.49801 * 145.02120 * 22 21 9 44 44 H 1.09000 * 117.50110 * 214.98522 * 23 21 9 45 45 H 1.09007 * 117.49577 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8005 2.6578 1.1813 6 6 4.7579 2.6850 2.3448 7 8 4.8214 1.7383 3.1002 8 7 5.5436 3.7614 2.5459 9 6 6.5527 3.7437 3.6079 10 6 5.8637 3.5725 4.9633 11 6 7.5173 2.5790 3.3754 12 7 8.1769 2.7429 2.0777 13 6 9.0899 1.8154 1.6517 14 1 9.3232 0.9629 2.2722 15 6 9.7146 1.9705 0.4217 16 7 9.4298 3.0093 -0.3347 17 14 10.9605 0.7057 -0.1591 18 1 11.1017 -0.3577 0.8678 19 1 10.4962 0.1031 -1.4344 20 1 12.2734 1.3658 -0.3726 21 6 7.3308 5.0609 3.5941 22 6 7.5245 5.7809 4.9301 23 6 6.5525 6.3444 3.8906 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5064 1.0920 30 1 2.4774 1.2355 2.1130 31 1 3.0959 3.4845 1.2708 32 1 4.3584 2.7548 0.2499 33 1 5.4409 4.5479 1.9876 34 1 5.1765 4.4022 5.1289 35 1 6.6144 3.5588 5.7534 36 1 5.3093 2.6340 4.9731 37 1 8.2677 2.5655 4.1657 38 1 6.9629 1.6406 3.3852 39 1 7.9671 3.5085 1.5202 40 1 9.8660 3.1174 -1.1943 41 1 8.1416 5.1203 2.8681 42 1 7.0981 5.3160 5.8190 43 1 8.4627 6.3144 5.0829 44 1 6.8515 7.2482 3.3598 45 1 5.4859 6.2503 4.0951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318712665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:47 Heat of formation + Delta-G solvation = -13.325951 kcal Electronic energy + Delta-G solvation = -22629.146813 eV Core-core repulsion = 19454.046320 eV Total energy + Delta-G solvation = -3175.100493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33982 -39.11885 -36.85852 -36.34144 -34.92230 -33.51836 -32.79526 -31.13851 -28.04149 -27.54188 -25.16929 -24.15739 -23.18321 -22.92523 -21.03864 -20.57426 -20.08761 -19.22231 -18.20977 -16.97881 -16.82991 -16.73327 -16.24565 -15.93676 -15.55855 -15.13723 -15.04674 -14.67632 -14.34815 -14.14360 -13.76471 -13.71461 -13.36506 -13.09668 -13.03219 -12.83195 -12.61208 -12.52530 -12.31642 -12.20424 -12.04009 -11.98154 -11.76328 -11.74607 -11.61401 -11.22357 -11.06747 -10.90856 -10.42630 -10.16993 -9.85571 -8.94693 -7.96149 -5.22044 1.42860 1.43658 1.44221 1.54357 1.83381 2.30841 2.54533 3.06472 3.36641 3.64704 3.84008 3.88978 3.95535 3.98306 4.08606 4.18763 4.25772 4.35723 4.41308 4.48169 4.58764 4.68513 4.75063 4.79248 4.81874 4.88700 4.93436 4.94588 5.00535 5.03688 5.10448 5.14098 5.25080 5.31200 5.33512 5.41707 5.45176 5.49410 5.77226 5.79051 5.92172 6.26840 6.78743 7.34202 7.47992 8.08854 8.38160 9.26952 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.005768 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.333272 B = 4853.051778 C = 6978.926273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C -0.089 4.089 4 C -0.091 4.091 5 C -0.134 4.134 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.707 5.707 9 C 0.210 3.790 10 C -0.152 4.152 11 C 0.146 3.854 12 N -0.728 5.728 13 C -0.244 4.244 14 H 0.061 0.939 15 C -0.067 4.067 16 N -0.962 5.962 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.289 1.289 21 C -0.175 4.175 22 C -0.166 4.166 23 C -0.153 4.153 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.408 0.592 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 5.979 5.307 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.188 4.188 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.458 6.458 8 N -0.358 5.358 9 C 0.124 3.876 10 C -0.210 4.210 11 C 0.018 3.982 12 N -0.371 5.371 13 C -0.376 4.376 14 H 0.079 0.921 15 C -0.260 4.260 16 N -0.613 5.613 17 Si 0.796 3.204 18 H -0.199 1.199 19 H -0.219 1.219 20 H -0.216 1.216 21 C -0.194 4.194 22 C -0.203 4.203 23 C -0.190 4.190 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.704 5.148 5.865 17.536 hybrid contribution 1.178 -0.467 -1.028 1.631 sum -14.525 4.681 4.838 16.009 Atomic orbital electron populations 1.24010 0.95492 1.02731 1.00578 1.23050 0.96642 0.98607 1.00456 1.20752 0.97903 0.95973 0.97934 1.21157 0.97224 0.95696 0.98834 1.21708 0.98030 1.01256 0.96381 1.21169 0.81136 0.81611 0.86246 1.90600 1.69833 1.36719 1.48607 1.45942 1.35820 1.17905 1.36094 1.19791 0.86684 0.93050 0.88101 1.22190 1.00964 1.02895 0.94956 1.21069 0.92870 0.96755 0.87513 1.42290 1.48448 1.28022 1.18338 1.19572 1.14843 1.02543 1.00671 0.92086 1.25391 1.02842 1.00272 0.97446 1.69783 1.47696 1.31209 1.12603 0.85173 0.78802 0.78691 0.77715 1.19931 1.21884 1.21568 1.22250 1.02828 0.92062 1.02256 1.23183 1.01754 1.02680 0.92685 1.23028 0.98244 0.95519 1.02233 0.87772 0.87427 0.88227 0.89601 0.90856 0.94156 0.92018 0.85811 0.88826 0.75678 0.90446 0.90903 0.92499 0.96741 0.96496 0.78860 0.93972 0.89707 0.87049 0.88401 0.87771 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 14.32 67.78 0.97 -2.29 16 2 C -0.17 -3.49 9.52 25.64 0.24 -3.24 16 3 C -0.09 -1.80 5.66 29.85 0.17 -1.63 16 4 C -0.09 -2.37 4.49 30.60 0.14 -2.24 16 5 C -0.13 -3.38 5.70 29.85 0.17 -3.21 16 6 C 0.51 17.11 7.23 87.66 0.63 17.75 16 7 O -0.58 -23.80 12.22 -3.05 -0.04 -23.83 16 8 N -0.71 -21.80 4.73 -422.92 -2.00 -23.80 16 9 C 0.21 6.99 0.54 3.60 0.00 6.99 16 10 C -0.15 -4.36 7.06 71.98 0.51 -3.85 16 11 C 0.15 6.54 4.94 86.38 0.43 6.97 16 12 N -0.73 -38.27 5.03 -343.46 -1.73 -40.00 16 13 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 14 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 16 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 17 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 C -0.17 -5.23 4.86 -10.80 -0.05 -5.28 16 22 C -0.17 -3.83 9.63 30.62 0.29 -3.54 16 23 C -0.15 -3.22 9.72 30.62 0.30 -2.93 16 24 H 0.10 1.54 8.06 -2.91 -0.02 1.52 16 25 H 0.11 1.54 7.84 -2.91 -0.02 1.52 16 26 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.09 1.39 7.79 -2.39 -0.02 1.37 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.29 8.10 -2.38 -0.02 1.27 16 30 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.41 10.55 8.38 -92.71 -0.78 9.78 16 34 H 0.08 1.80 7.00 -2.39 -0.02 1.79 16 35 H 0.07 1.93 6.81 -2.39 -0.02 1.91 16 36 H 0.06 1.92 6.13 -2.39 -0.01 1.91 16 37 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 38 H 0.02 0.87 6.22 -2.39 -0.01 0.85 16 39 H 0.38 20.27 6.63 -92.71 -0.61 19.66 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.08 3.20 7.09 -2.39 -0.02 3.19 16 42 H 0.11 2.31 5.88 -2.39 -0.01 2.29 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 1.95 7.39 -2.38 -0.02 1.93 16 Total: -1.00 -71.01 359.53 3.23 -67.78 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.42 Total: 41.94 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.11 Total: -13.47 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -3.44 Total: -122.03 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -71.01 3.23 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.454 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds