Wall clock time and date at job start Tue Mar 31 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 H 1.08993 * 109.47201 * 55.44990 * 3 2 1 5 5 N 1.46902 * 109.46678 * 295.44817 * 3 2 1 6 6 C 1.46899 * 111.00383 * 303.09664 * 5 3 2 7 7 C 1.53000 * 109.47507 * 185.16436 * 6 5 3 8 8 H 1.09007 * 109.46763 * 55.00116 * 7 6 5 9 9 C 1.47201 * 109.46890 * 295.00225 * 7 6 5 10 10 N 5.14644 * 63.49692 * 299.51265 * 2 1 3 11 11 C 1.52997 * 109.47330 * 175.00133 * 7 6 5 12 12 C 1.50699 * 109.47250 * 185.00102 * 11 7 6 13 13 H 1.08000 * 120.00018 * 0.02562 * 12 11 7 14 14 C 1.37872 * 119.99853 * 179.97438 * 12 11 7 15 15 N 1.31516 * 119.99590 * 180.27302 * 14 12 11 16 16 Si 1.86802 * 120.00405 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46912 * 89.99799 * 16 14 12 18 18 H 1.48494 * 109.47179 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.46666 * 330.00092 * 16 14 12 20 20 C 1.52996 * 109.47033 * 175.45272 * 3 2 1 21 21 H 1.09003 * 109.48350 * 59.99413 * 20 3 2 22 22 C 1.53089 * 109.48119 * 180.02562 * 20 3 2 23 23 C 1.53180 * 109.16669 * 177.58933 * 22 20 3 24 24 C 1.53185 * 109.03318 * 303.02172 * 23 22 20 25 25 C 1.53091 * 109.16517 * 56.97633 * 24 23 22 26 26 O 1.42903 * 109.42565 * 302.39969 * 25 24 23 27 27 H 1.08997 * 109.46848 * 185.51107 * 1 2 3 28 28 H 1.09001 * 109.47079 * 305.51467 * 1 2 3 29 29 H 1.09002 * 109.46620 * 65.51584 * 1 2 3 30 30 H 1.09000 * 109.47056 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.46982 * 119.99889 * 2 1 3 32 32 H 1.00901 * 111.00379 * 67.05207 * 5 3 2 33 33 H 1.09001 * 109.47218 * 65.15946 * 6 5 3 34 34 H 1.09000 * 109.46909 * 305.16984 * 6 5 3 35 35 H 1.08997 * 109.47236 * 64.99565 * 11 7 6 36 36 H 1.09008 * 109.46920 * 305.00012 * 11 7 6 37 37 H 0.97003 * 119.99712 * 179.72271 * 15 14 12 38 38 H 1.09003 * 109.52429 * 297.49503 * 22 20 3 39 39 H 1.09003 * 109.52211 * 57.68492 * 22 20 3 40 40 H 1.09003 * 109.54164 * 62.88397 * 23 22 20 41 41 H 1.08994 * 109.54670 * 183.06508 * 23 22 20 42 42 H 1.08999 * 109.51801 * 176.88341 * 24 23 22 43 43 H 1.09003 * 109.51776 * 297.06797 * 24 23 22 44 44 H 1.09002 * 109.47810 * 62.37309 * 25 24 23 45 45 H 1.09000 * 109.47824 * 182.39378 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6117 1.9793 0.8464 5 7 1.6422 2.1025 -1.2507 6 6 2.1412 1.3633 -2.4179 7 6 1.8195 2.1456 -3.6928 8 1 2.2241 3.1546 -3.6118 9 6 0.3599 2.2151 -3.8707 10 7 -0.7665 2.2688 -4.0080 11 6 2.4469 1.4397 -4.8965 12 6 2.2354 2.2731 -6.1341 13 1 1.7067 3.2125 -6.0686 14 6 2.7177 1.8367 -7.3497 15 7 2.5377 2.5666 -8.4289 16 14 3.6340 0.2128 -7.4627 17 1 2.6685 -0.8826 -7.7332 18 1 4.6273 0.2805 -8.5644 19 1 4.3345 -0.0504 -6.1800 20 6 3.5658 1.4440 0.1144 21 1 3.9943 0.9071 -0.7320 22 6 4.0763 2.8873 0.1150 23 6 5.5980 2.8824 0.2903 24 6 5.9495 2.1408 1.5838 25 6 5.3666 0.7263 1.5264 26 8 3.9530 0.8024 1.3311 27 1 -0.3633 -1.0229 0.0987 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.6407 2.2171 -1.2964 33 1 1.6616 0.3854 -2.4610 34 1 3.2203 1.2352 -2.3327 35 1 1.9786 0.4646 -5.0306 36 1 3.5154 1.3090 -4.7247 37 1 2.8806 2.2615 -9.2835 38 1 3.8201 3.3647 -0.8308 39 1 3.6167 3.4358 0.9373 40 1 6.0610 2.3769 -0.5572 41 1 5.9619 3.9082 0.3462 42 1 7.0330 2.0843 1.6882 43 1 5.5278 2.6743 2.4356 44 1 5.8189 0.1801 0.6986 45 1 5.5772 0.2082 2.4619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335898367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:30 Heat of formation + Delta-G solvation = -46.341090 kcal Electronic energy + Delta-G solvation = -22756.786891 eV Core-core repulsion = 19580.254754 eV Total energy + Delta-G solvation = -3176.532137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93975 -37.90484 -36.08615 -33.94542 -33.69145 -32.40374 -31.40523 -30.62072 -27.50079 -25.98648 -24.46690 -23.45595 -22.71822 -21.50679 -20.24938 -19.82184 -17.25030 -16.90723 -16.57362 -16.24994 -15.16398 -14.98125 -14.79703 -14.59696 -14.41430 -14.08497 -13.73751 -13.40091 -13.07873 -12.96624 -12.73633 -12.61539 -12.40683 -12.32649 -12.02650 -11.61047 -11.59442 -11.46459 -11.32177 -11.15697 -10.95937 -10.91324 -10.82384 -10.60330 -10.33824 -10.20421 -9.98147 -9.78845 -9.47103 -9.34350 -8.62879 -8.37347 -6.11794 -4.12422 3.25306 3.32777 3.33414 3.47093 3.53441 3.60139 4.31787 4.36872 4.55634 4.68316 4.71755 4.79074 4.81379 4.97040 5.03539 5.11384 5.15158 5.22860 5.29444 5.39213 5.46306 5.49819 5.56790 5.63165 5.66403 5.73303 5.78009 5.85285 5.94284 5.97606 6.00737 6.07983 6.11955 6.17689 6.26402 6.31851 6.36206 6.93281 6.95824 7.10926 7.18848 7.34882 7.62473 8.34025 8.41704 8.91927 9.48096 11.01337 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.004750 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.553463 B = 5893.508301 C = 6786.798649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C 0.099 3.901 4 H 0.088 0.912 5 N -0.678 5.678 6 C 0.055 3.945 7 C 0.019 3.981 8 H 0.116 0.884 9 C 0.239 3.761 10 N -0.469 5.469 11 C -0.004 4.004 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.097 3.903 21 H 0.061 0.939 22 C -0.140 4.140 23 C -0.126 4.126 24 C -0.156 4.156 25 C 0.064 3.936 26 O -0.381 6.381 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.346 0.654 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.018 0.982 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 -3.946 21.459 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C -0.012 4.012 4 H 0.106 0.894 5 N -0.311 5.311 6 C -0.075 4.075 7 C -0.003 4.003 8 H 0.133 0.867 9 C -0.078 4.078 10 N -0.145 5.145 11 C -0.043 4.043 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.187 1.187 20 C 0.039 3.961 21 H 0.078 0.922 22 C -0.178 4.178 23 C -0.164 4.164 24 C -0.194 4.194 25 C -0.013 4.013 26 O -0.300 6.300 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.312 -3.470 21.198 22.128 hybrid contribution 0.561 -1.491 -0.507 1.672 sum 5.872 -4.961 20.691 22.073 Atomic orbital electron populations 1.21780 0.95841 1.01822 1.01678 1.22223 0.96039 0.98426 1.03157 1.21430 0.93274 0.93233 0.93227 0.89431 1.60562 1.18829 1.50809 1.00854 1.22236 1.01414 0.95257 0.88589 1.19051 0.82303 1.03244 0.95725 0.86663 1.29146 0.94985 0.92122 0.91550 1.81052 1.13606 1.09844 1.10020 1.19631 0.96352 0.96090 0.92238 1.21028 1.37455 1.07409 0.90636 0.90762 1.24984 0.95501 0.96940 0.95633 1.69907 1.46043 1.38134 0.99395 0.86834 0.80162 0.84436 0.78205 1.20299 1.21233 1.18734 1.22069 0.94395 0.93007 0.86631 0.92151 1.22079 0.94692 0.96931 1.04067 1.21636 0.96743 1.00743 0.97231 1.22191 1.00913 0.97243 0.99043 1.22514 0.81561 0.95942 1.01316 1.87844 1.22053 1.79147 1.40955 0.92658 0.92639 0.92936 0.91475 0.90698 0.83413 0.94065 0.89155 0.96329 0.94415 0.92566 0.89029 0.91549 0.91809 0.91557 0.91286 0.91277 0.93346 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.54 37.16 0.35 -1.26 16 2 C -0.16 -1.70 5.01 -26.73 -0.13 -1.84 16 3 C 0.10 1.06 2.34 -67.71 -0.16 0.90 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 5 N -0.68 -8.09 5.59 -106.73 -0.60 -8.69 16 6 C 0.05 0.74 4.26 -3.82 -0.02 0.72 16 7 C 0.02 0.32 2.42 -93.41 -0.23 0.10 16 8 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 9 C 0.24 4.68 13.07 -20.76 -0.27 4.41 16 10 N -0.47 -10.05 18.54 42.15 0.78 -9.27 16 11 C 0.00 -0.09 3.49 -27.89 -0.10 -0.18 16 12 C -0.53 -14.08 9.15 -34.44 -0.32 -14.40 16 13 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 16 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 20 C 0.10 1.04 1.95 -26.69 -0.05 0.98 16 21 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 22 C -0.14 -1.44 5.22 -26.59 -0.14 -1.58 16 23 C -0.13 -1.15 6.03 -26.54 -0.16 -1.31 16 24 C -0.16 -1.26 6.14 -26.59 -0.16 -1.43 16 25 C 0.06 0.55 6.84 37.20 0.25 0.81 16 26 O -0.38 -4.18 9.65 -35.23 -0.34 -4.52 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.62 7.21 -51.93 -0.37 0.24 16 30 H 0.07 0.76 6.22 -51.93 -0.32 0.44 16 31 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 32 H 0.35 4.34 6.77 -39.29 -0.27 4.07 16 33 H 0.04 0.56 6.45 -51.93 -0.34 0.22 16 34 H 0.09 1.12 6.14 -51.93 -0.32 0.80 16 35 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 36 H 0.04 0.75 7.20 -51.92 -0.37 0.38 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -29.98 351.76 -7.71 -37.68 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.73 Total: 1.97 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.22 Total: -12.16 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.96 Total: -44.14 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.34 Total: -4.52 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.98 -7.71 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335898367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.657 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds