Wall clock time and date at job start Tue Mar 31 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 H 1.08993 * 109.47201 * 55.44990 * 3 2 1 5 5 N 1.46902 * 109.46678 * 295.44817 * 3 2 1 6 6 C 1.46899 * 111.00383 * 303.09664 * 5 3 2 7 7 C 1.53000 * 109.47507 * 185.16436 * 6 5 3 8 8 H 1.09007 * 109.46763 * 55.00116 * 7 6 5 9 9 C 1.47201 * 109.46890 * 295.00225 * 7 6 5 10 10 N 5.14644 * 63.49692 * 299.51265 * 2 1 3 11 11 C 1.52997 * 109.47330 * 175.00133 * 7 6 5 12 12 C 1.50699 * 109.47250 * 185.00102 * 11 7 6 13 13 H 1.08000 * 120.00018 * 0.02562 * 12 11 7 14 14 C 1.37872 * 119.99853 * 179.97438 * 12 11 7 15 15 N 1.31516 * 119.99590 * 180.27302 * 14 12 11 16 16 Si 1.86802 * 120.00405 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46912 * 89.99799 * 16 14 12 18 18 H 1.48494 * 109.47179 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.46666 * 330.00092 * 16 14 12 20 20 C 1.52996 * 109.47033 * 175.45272 * 3 2 1 21 21 H 1.09003 * 109.48350 * 59.99413 * 20 3 2 22 22 C 1.53089 * 109.48119 * 180.02562 * 20 3 2 23 23 C 1.53180 * 109.16669 * 177.58933 * 22 20 3 24 24 C 1.53185 * 109.03318 * 303.02172 * 23 22 20 25 25 C 1.53091 * 109.16517 * 56.97633 * 24 23 22 26 26 O 1.42903 * 109.42565 * 302.39969 * 25 24 23 27 27 H 1.08997 * 109.46848 * 185.51107 * 1 2 3 28 28 H 1.09001 * 109.47079 * 305.51467 * 1 2 3 29 29 H 1.09002 * 109.46620 * 65.51584 * 1 2 3 30 30 H 1.09000 * 109.47056 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.46982 * 119.99889 * 2 1 3 32 32 H 1.00901 * 111.00379 * 67.05207 * 5 3 2 33 33 H 1.09001 * 109.47218 * 65.15946 * 6 5 3 34 34 H 1.09000 * 109.46909 * 305.16984 * 6 5 3 35 35 H 1.08997 * 109.47236 * 64.99565 * 11 7 6 36 36 H 1.09008 * 109.46920 * 305.00012 * 11 7 6 37 37 H 0.97003 * 119.99712 * 179.72271 * 15 14 12 38 38 H 1.09003 * 109.52429 * 297.49503 * 22 20 3 39 39 H 1.09003 * 109.52211 * 57.68492 * 22 20 3 40 40 H 1.09003 * 109.54164 * 62.88397 * 23 22 20 41 41 H 1.08994 * 109.54670 * 183.06508 * 23 22 20 42 42 H 1.08999 * 109.51801 * 176.88341 * 24 23 22 43 43 H 1.09003 * 109.51776 * 297.06797 * 24 23 22 44 44 H 1.09002 * 109.47810 * 62.37309 * 25 24 23 45 45 H 1.09000 * 109.47824 * 182.39378 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6117 1.9793 0.8464 5 7 1.6422 2.1025 -1.2507 6 6 2.1412 1.3633 -2.4179 7 6 1.8195 2.1456 -3.6928 8 1 2.2241 3.1546 -3.6118 9 6 0.3599 2.2151 -3.8707 10 7 -0.7665 2.2688 -4.0080 11 6 2.4469 1.4397 -4.8965 12 6 2.2354 2.2731 -6.1341 13 1 1.7067 3.2125 -6.0686 14 6 2.7177 1.8367 -7.3497 15 7 2.5377 2.5666 -8.4289 16 14 3.6340 0.2128 -7.4627 17 1 2.6685 -0.8826 -7.7332 18 1 4.6273 0.2805 -8.5644 19 1 4.3345 -0.0504 -6.1800 20 6 3.5658 1.4440 0.1144 21 1 3.9943 0.9071 -0.7320 22 6 4.0763 2.8873 0.1150 23 6 5.5980 2.8824 0.2903 24 6 5.9495 2.1408 1.5838 25 6 5.3666 0.7263 1.5264 26 8 3.9530 0.8024 1.3311 27 1 -0.3633 -1.0229 0.0987 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.6407 2.2171 -1.2964 33 1 1.6616 0.3854 -2.4610 34 1 3.2203 1.2352 -2.3327 35 1 1.9786 0.4646 -5.0306 36 1 3.5154 1.3090 -4.7247 37 1 2.8806 2.2615 -9.2835 38 1 3.8201 3.3647 -0.8308 39 1 3.6167 3.4358 0.9373 40 1 6.0610 2.3769 -0.5572 41 1 5.9619 3.9082 0.3462 42 1 7.0330 2.0843 1.6882 43 1 5.5278 2.6743 2.4356 44 1 5.8189 0.1801 0.6986 45 1 5.5772 0.2082 2.4619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335898367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:29 Heat of formation + Delta-G solvation = -64.893393 kcal Electronic energy + Delta-G solvation = -22757.591379 eV Core-core repulsion = 19580.254754 eV Total energy + Delta-G solvation = -3177.336625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76712 -39.01628 -37.41323 -35.60061 -34.49090 -34.09759 -32.28148 -31.78081 -28.91182 -27.05464 -25.20334 -24.72881 -23.48989 -23.28188 -20.97697 -20.75800 -18.95543 -18.32585 -17.79382 -17.07412 -16.45740 -15.95135 -15.87831 -15.51422 -15.38222 -15.15695 -14.94262 -14.74034 -14.45692 -14.20684 -13.91264 -13.78876 -13.60321 -13.48148 -13.21095 -13.14597 -12.80167 -12.59912 -12.39887 -12.33732 -11.99496 -11.89341 -11.75499 -11.73558 -11.71010 -11.44555 -11.32531 -11.29553 -11.00069 -10.73232 -10.22985 -9.33734 -8.24135 -6.29555 1.43121 1.43722 1.54869 1.96105 1.97354 2.40951 2.69278 3.11925 3.24084 3.37532 3.75005 3.97069 4.05359 4.09989 4.16122 4.17442 4.28019 4.35146 4.35776 4.43356 4.58459 4.59100 4.71792 4.77925 4.81464 4.83971 4.90368 4.93610 5.02357 5.08497 5.12361 5.18208 5.24779 5.26631 5.29441 5.36468 5.42579 5.47641 5.54033 5.63882 6.01691 6.26870 6.33037 6.43423 6.75767 6.81758 7.34873 8.92801 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.004750 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.553463 B = 5893.508301 C = 6786.798649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.103 3.897 4 H 0.089 0.911 5 N -0.677 5.677 6 C 0.067 3.933 7 C 0.026 3.974 8 H 0.120 0.880 9 C 0.249 3.751 10 N -0.505 5.505 11 C -0.002 4.002 12 C -0.529 4.529 13 H 0.029 0.971 14 C 0.004 3.996 15 N -0.954 5.954 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.223 1.223 20 C 0.100 3.900 21 H 0.059 0.941 22 C -0.138 4.138 23 C -0.127 4.127 24 C -0.152 4.152 25 C 0.057 3.943 26 O -0.394 6.394 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.343 0.657 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 -5.724 23.540 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.007 4.007 4 H 0.107 0.893 5 N -0.309 5.309 6 C -0.063 4.063 7 C 0.004 3.996 8 H 0.138 0.862 9 C -0.067 4.067 10 N -0.183 5.183 11 C -0.042 4.042 12 C -0.567 4.567 13 H 0.048 0.952 14 C -0.192 4.192 15 N -0.595 5.595 16 Si 0.768 3.232 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.145 1.145 20 C 0.042 3.958 21 H 0.077 0.923 22 C -0.176 4.176 23 C -0.165 4.165 24 C -0.190 4.190 25 C -0.019 4.019 26 O -0.313 6.313 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.125 -5.248 23.324 24.947 hybrid contribution -0.052 -0.839 -1.123 1.402 sum 7.073 -6.087 22.202 24.083 Atomic orbital electron populations 1.21757 0.95825 1.02153 1.01149 1.22161 0.95949 0.98119 1.03012 1.21417 0.93674 0.93240 0.92387 0.89306 1.60517 1.18600 1.50806 1.00938 1.22099 1.02535 0.94563 0.87091 1.19084 0.80331 1.03809 0.96359 0.86219 1.29684 0.95515 0.91034 0.90462 1.81050 1.14912 1.11102 1.11225 1.19584 0.98206 0.95393 0.90967 1.21394 1.35859 1.06390 0.93105 0.95233 1.26011 0.96843 1.01237 0.95148 1.70089 1.48316 1.40811 1.00247 0.85746 0.78779 0.78849 0.79848 1.20293 1.21539 1.14530 1.22005 0.93994 0.93115 0.86710 0.92312 1.22035 0.95643 0.96582 1.03308 1.21649 0.95778 1.01202 0.97829 1.22164 1.01869 0.96678 0.98265 1.22707 0.80466 0.96487 1.02269 1.87826 1.23490 1.79174 1.40844 0.92167 0.91971 0.94392 0.91843 0.90510 0.83782 0.93699 0.87344 0.95800 0.91824 0.92687 0.90024 0.92018 0.91837 0.91209 0.89718 0.91559 0.92956 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.54 71.99 0.69 -2.25 16 2 C -0.15 -2.94 5.01 30.60 0.15 -2.79 16 3 C 0.10 2.01 2.34 44.91 0.10 2.11 16 4 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 5 N -0.68 -14.96 5.59 -491.58 -2.75 -17.71 16 6 C 0.07 1.63 4.26 86.30 0.37 2.00 16 7 C 0.03 0.86 2.42 -12.60 -0.03 0.83 16 8 H 0.12 3.88 8.14 -2.38 -0.02 3.86 16 9 C 0.25 9.70 13.07 89.44 1.17 10.87 16 10 N -0.51 -21.86 18.54 20.01 0.37 -21.49 16 11 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 12 C -0.53 -28.42 9.15 25.60 0.23 -28.18 16 13 H 0.03 1.80 7.84 -2.91 -0.02 1.77 16 14 C 0.00 0.24 5.47 84.65 0.46 0.70 16 15 N -0.95 -58.95 13.96 21.45 0.30 -58.66 16 16 Si 0.94 41.25 27.47 68.60 1.88 43.13 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.22 -8.25 6.54 99.48 0.65 -7.60 16 20 C 0.10 1.90 1.95 30.62 0.06 1.96 16 21 H 0.06 1.14 6.37 -2.39 -0.02 1.13 16 22 C -0.14 -2.57 5.22 30.68 0.16 -2.41 16 23 C -0.13 -2.03 6.03 30.72 0.19 -1.84 16 24 C -0.15 -2.07 6.14 30.69 0.19 -1.88 16 25 C 0.06 0.84 6.84 72.01 0.49 1.33 16 26 O -0.39 -7.67 9.65 -148.98 -1.44 -9.11 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.84 7.21 -2.39 -0.02 0.82 16 30 H 0.06 1.27 6.22 -2.39 -0.01 1.26 16 31 H 0.08 1.47 7.55 -2.39 -0.02 1.46 16 32 H 0.34 8.17 6.77 -89.69 -0.61 7.56 16 33 H 0.04 1.09 6.45 -2.39 -0.02 1.07 16 34 H 0.11 2.30 6.14 -2.39 -0.01 2.29 16 35 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 36 H 0.06 2.27 7.20 -2.38 -0.02 2.25 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.08 1.68 7.69 -2.39 -0.02 1.66 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.89 351.76 3.01 -62.88 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.30 Total: 20.50 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.34 Total: -19.55 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -2.08 Total: -97.85 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.44 Total: -9.11 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.13 kcal Total: -65.89 3.01 -62.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335898367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds