Wall clock time and date at job start Tue Mar 31 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47240 * 2 1 4 4 H 1.09003 * 109.47372 * 54.49775 * 3 2 1 5 5 C 1.53000 * 109.47181 * 174.49483 * 3 2 1 6 6 O 1.42904 * 109.47009 * 55.00290 * 5 3 2 7 7 C 1.42895 * 113.99994 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47115 * 179.97438 * 7 6 5 9 9 C 1.52996 * 117.50072 * 243.74918 * 8 7 6 10 10 C 1.53000 * 117.50050 * 175.08827 * 8 7 6 11 11 N 1.46898 * 109.47103 * 294.49712 * 3 2 1 12 12 C 1.46905 * 110.99949 * 153.66541 * 11 3 2 13 13 C 1.53000 * 109.46815 * 185.23955 * 12 11 3 14 14 H 1.09004 * 109.47404 * 55.00551 * 13 12 11 15 15 C 1.47196 * 109.47639 * 295.00185 * 13 12 11 16 16 N 5.88716 * 102.32685 * 311.92941 * 2 1 3 17 17 C 1.53002 * 109.46822 * 174.99734 * 13 12 11 18 18 C 1.50699 * 109.47125 * 184.99985 * 17 13 12 19 19 H 1.07997 * 119.99966 * 0.02562 * 18 17 13 20 20 C 1.37879 * 120.00035 * 180.02562 * 18 17 13 21 21 N 1.31514 * 119.99670 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00244 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47174 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47191 * 119.99995 * 22 20 18 25 25 H 1.48497 * 109.47673 * 240.00531 * 22 20 18 26 26 H 1.08994 * 109.47342 * 304.73533 * 1 2 3 27 27 H 1.08998 * 109.47514 * 64.74195 * 1 2 3 28 28 H 1.09004 * 109.47238 * 184.73861 * 1 2 3 29 29 H 1.09002 * 109.47020 * 239.99385 * 2 1 3 30 30 H 1.09000 * 109.47079 * 120.00446 * 2 1 3 31 31 H 1.08999 * 109.46847 * 174.99800 * 5 3 2 32 32 H 1.08995 * 109.47497 * 295.00427 * 5 3 2 33 33 H 1.08995 * 109.47351 * 300.00244 * 7 6 5 34 34 H 1.08998 * 109.46887 * 60.00216 * 7 6 5 35 35 H 1.09003 * 115.55094 * 29.41795 * 8 7 6 36 36 H 1.08994 * 117.50152 * 0.02562 * 9 8 7 37 37 H 1.09001 * 117.49984 * 145.01938 * 9 8 7 38 38 H 1.09004 * 117.49819 * 214.98289 * 10 8 7 39 39 H 1.09004 * 117.49614 * 0.02562 * 10 8 7 40 40 H 1.00895 * 111.00352 * 277.61874 * 11 3 2 41 41 H 1.08993 * 109.46819 * 65.24188 * 12 11 3 42 42 H 1.08999 * 109.47193 * 305.24393 * 12 11 3 43 43 H 1.09007 * 109.46800 * 65.00274 * 17 13 12 44 44 H 1.08995 * 109.47642 * 305.00644 * 17 13 12 45 45 H 0.97007 * 119.99409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5637 1.4446 0.1384 6 8 4.1368 0.6377 -0.8924 7 6 5.5637 0.5725 -0.8539 8 6 6.0649 -0.3136 -1.9961 9 6 6.7984 -1.6026 -1.6205 10 6 7.5779 -0.4183 -2.1974 11 7 1.6618 2.0955 -1.2603 12 6 1.5508 3.5500 -1.0869 13 6 1.0305 4.1796 -2.3806 14 1 0.0923 3.7030 -2.6650 15 6 2.0218 3.9897 -3.4521 16 7 2.7868 3.8432 -4.2789 17 6 0.7964 5.6757 -2.1616 18 6 0.1693 6.2720 -3.3953 19 1 -0.0416 5.6464 -4.2500 20 6 -0.1352 7.6162 -3.4329 21 7 0.1222 8.3780 -2.3923 22 14 -0.9132 8.3552 -4.9619 23 1 -1.0996 7.2946 -5.9845 24 1 -2.2316 8.9421 -4.6121 25 1 -0.0274 9.4163 -5.5047 26 1 -0.3634 0.5855 0.8445 27 1 -0.3634 0.4385 -0.9294 28 1 -0.3634 -1.0242 0.0849 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9351 2.4655 0.0493 32 1 3.8408 1.0408 1.1121 33 1 5.9764 1.5754 -0.9637 34 1 5.8825 0.1508 0.0993 35 1 5.4362 -0.3334 -2.8863 36 1 6.9237 -1.8197 -0.5598 37 1 6.6526 -2.4704 -2.2638 38 1 7.9447 -0.5073 -3.2200 39 1 8.2164 0.1438 -1.5158 40 1 2.3141 1.8678 -1.9956 41 1 2.5310 3.9635 -0.8502 42 1 0.8588 3.7672 -0.2732 43 1 1.7491 6.1674 -1.9643 44 1 0.1308 5.8185 -1.3103 45 1 -0.0917 9.3238 -2.4189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356619010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:40 Heat of formation + Delta-G solvation = -21.318071 kcal Electronic energy + Delta-G solvation = -21762.409019 eV Core-core repulsion = 18586.961962 eV Total energy + Delta-G solvation = -3175.447058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.05739 -37.77522 -36.67873 -35.47668 -33.86270 -32.64605 -30.85994 -28.86382 -26.85021 -25.92370 -23.62987 -22.66933 -22.50762 -21.82180 -20.92241 -20.32541 -17.10160 -16.65950 -16.51504 -16.19342 -15.78907 -15.22721 -14.95656 -14.56545 -14.46274 -14.10058 -13.50454 -13.08828 -12.98395 -12.77339 -12.67618 -12.19692 -12.18062 -12.03030 -11.82787 -11.72035 -11.36665 -11.28003 -11.11463 -10.97090 -10.87179 -10.69662 -10.67829 -10.63769 -10.50410 -10.39519 -10.23394 -9.65475 -9.49591 -9.19273 -8.44508 -8.20972 -6.08412 -4.11018 3.27303 3.29551 3.37666 3.42795 3.62813 3.64378 3.70775 4.31878 4.44405 4.55235 4.61783 4.76346 4.78937 4.87014 4.97250 5.04850 5.17860 5.29513 5.30489 5.30589 5.34444 5.40171 5.46997 5.59161 5.59707 5.63747 5.75272 5.78562 5.81225 5.95566 6.04015 6.09628 6.18162 6.32202 6.47000 6.54060 6.58978 7.01223 7.24056 7.45481 7.54237 7.58866 7.87419 8.25347 8.47632 8.93979 9.54385 11.02564 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.003521 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.000241 B = 7949.280568 C = 8904.016820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.092 3.908 4 H 0.091 0.909 5 C 0.029 3.971 6 O -0.377 6.377 7 C 0.094 3.906 8 C -0.151 4.151 9 C -0.178 4.178 10 C -0.175 4.175 11 N -0.681 5.681 12 C 0.066 3.934 13 C 0.008 3.992 14 H 0.110 0.890 15 C 0.242 3.758 16 N -0.477 5.477 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.284 1.284 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.348 0.652 41 H 0.031 0.969 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.039 0.961 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -17.804 8.881 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.018 4.018 4 H 0.109 0.891 5 C -0.050 4.050 6 O -0.296 6.296 7 C 0.018 3.982 8 C -0.169 4.169 9 C -0.214 4.214 10 C -0.212 4.212 11 N -0.313 5.313 12 C -0.065 4.065 13 C -0.014 4.014 14 H 0.128 0.872 15 C -0.075 4.075 16 N -0.154 5.154 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.210 1.210 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.604 -18.055 7.639 21.409 hybrid contribution 0.494 1.127 -0.248 1.256 sum 9.098 -16.927 7.391 20.590 Atomic orbital electron populations 1.21667 0.95367 1.00337 1.02731 1.21366 0.96270 0.94855 1.01732 1.21765 0.89752 0.96661 0.93638 0.89087 1.23334 0.96442 0.94345 0.90835 1.87865 1.19155 1.70310 1.52260 1.21961 0.81603 0.98239 0.96415 1.22134 0.94727 0.99236 1.00788 1.23063 1.04312 0.92432 1.01638 1.22982 0.93419 1.02211 1.02610 1.60581 1.54954 1.08875 1.06842 1.22129 1.00014 0.86465 0.97845 1.19300 0.93492 1.01738 0.86822 0.87180 1.29286 0.93357 0.90894 0.93924 1.81019 1.12005 1.11357 1.11022 1.19163 0.98023 0.85135 0.98317 1.21197 1.40767 0.93957 1.00304 0.92436 1.24957 0.95640 0.97221 0.96225 1.69952 1.47815 1.05967 1.29384 0.86538 0.78995 0.79270 0.83307 1.19651 1.20841 1.21036 0.93396 0.91233 0.93870 0.91235 0.92686 0.93293 0.93143 0.93080 0.93443 0.86724 0.88818 0.88650 0.88366 0.88748 0.83271 0.95069 0.89197 0.95864 0.94272 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.75 37.16 0.36 -1.14 16 2 C -0.10 -1.11 5.31 -26.74 -0.14 -1.25 16 3 C 0.09 1.03 2.41 -67.72 -0.16 0.87 16 4 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 5 C 0.03 0.31 5.61 37.16 0.21 0.52 16 6 O -0.38 -4.61 8.93 -35.23 -0.31 -4.93 16 7 C 0.09 0.99 6.22 37.16 0.23 1.22 16 8 C -0.15 -1.52 6.05 -90.62 -0.55 -2.07 16 9 C -0.18 -1.46 10.18 -26.70 -0.27 -1.73 16 10 C -0.18 -1.46 10.25 -26.69 -0.27 -1.74 16 11 N -0.68 -9.21 5.77 -106.73 -0.62 -9.83 16 12 C 0.07 0.97 4.94 -3.82 -0.02 0.95 16 13 C 0.01 0.16 2.42 -93.41 -0.23 -0.07 16 14 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 15 C 0.24 5.03 13.07 -20.76 -0.27 4.75 16 16 N -0.48 -10.68 18.54 42.15 0.78 -9.90 16 17 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 18 C -0.52 -14.06 8.60 -34.44 -0.30 -14.36 16 19 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.35 5.26 7.14 -39.29 -0.28 4.98 16 41 H 0.03 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -29.57 375.10 -8.53 -38.10 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.12 Total: 1.16 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.63 Total: -11.80 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.90 Total: -44.63 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.31 Total: -4.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.57 -8.53 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.780 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds