Wall clock time and date at job start Tue Mar 31 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47240 * 2 1 4 4 H 1.09003 * 109.47372 * 54.49775 * 3 2 1 5 5 C 1.53000 * 109.47181 * 174.49483 * 3 2 1 6 6 O 1.42904 * 109.47009 * 55.00290 * 5 3 2 7 7 C 1.42895 * 113.99994 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47115 * 179.97438 * 7 6 5 9 9 C 1.52996 * 117.50072 * 243.74918 * 8 7 6 10 10 C 1.53000 * 117.50050 * 175.08827 * 8 7 6 11 11 N 1.46898 * 109.47103 * 294.49712 * 3 2 1 12 12 C 1.46905 * 110.99949 * 153.66541 * 11 3 2 13 13 C 1.53000 * 109.46815 * 185.23955 * 12 11 3 14 14 H 1.09004 * 109.47404 * 55.00551 * 13 12 11 15 15 C 1.47196 * 109.47639 * 295.00185 * 13 12 11 16 16 N 5.88716 * 102.32685 * 311.92941 * 2 1 3 17 17 C 1.53002 * 109.46822 * 174.99734 * 13 12 11 18 18 C 1.50699 * 109.47125 * 184.99985 * 17 13 12 19 19 H 1.07997 * 119.99966 * 0.02562 * 18 17 13 20 20 C 1.37879 * 120.00035 * 180.02562 * 18 17 13 21 21 N 1.31514 * 119.99670 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00244 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47174 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47191 * 119.99995 * 22 20 18 25 25 H 1.48497 * 109.47673 * 240.00531 * 22 20 18 26 26 H 1.08994 * 109.47342 * 304.73533 * 1 2 3 27 27 H 1.08998 * 109.47514 * 64.74195 * 1 2 3 28 28 H 1.09004 * 109.47238 * 184.73861 * 1 2 3 29 29 H 1.09002 * 109.47020 * 239.99385 * 2 1 3 30 30 H 1.09000 * 109.47079 * 120.00446 * 2 1 3 31 31 H 1.08999 * 109.46847 * 174.99800 * 5 3 2 32 32 H 1.08995 * 109.47497 * 295.00427 * 5 3 2 33 33 H 1.08995 * 109.47351 * 300.00244 * 7 6 5 34 34 H 1.08998 * 109.46887 * 60.00216 * 7 6 5 35 35 H 1.09003 * 115.55094 * 29.41795 * 8 7 6 36 36 H 1.08994 * 117.50152 * 0.02562 * 9 8 7 37 37 H 1.09001 * 117.49984 * 145.01938 * 9 8 7 38 38 H 1.09004 * 117.49819 * 214.98289 * 10 8 7 39 39 H 1.09004 * 117.49614 * 0.02562 * 10 8 7 40 40 H 1.00895 * 111.00352 * 277.61874 * 11 3 2 41 41 H 1.08993 * 109.46819 * 65.24188 * 12 11 3 42 42 H 1.08999 * 109.47193 * 305.24393 * 12 11 3 43 43 H 1.09007 * 109.46800 * 65.00274 * 17 13 12 44 44 H 1.08995 * 109.47642 * 305.00644 * 17 13 12 45 45 H 0.97007 * 119.99409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5637 1.4446 0.1384 6 8 4.1368 0.6377 -0.8924 7 6 5.5637 0.5725 -0.8539 8 6 6.0649 -0.3136 -1.9961 9 6 6.7984 -1.6026 -1.6205 10 6 7.5779 -0.4183 -2.1974 11 7 1.6618 2.0955 -1.2603 12 6 1.5508 3.5500 -1.0869 13 6 1.0305 4.1796 -2.3806 14 1 0.0923 3.7030 -2.6650 15 6 2.0218 3.9897 -3.4521 16 7 2.7868 3.8432 -4.2789 17 6 0.7964 5.6757 -2.1616 18 6 0.1693 6.2720 -3.3953 19 1 -0.0416 5.6464 -4.2500 20 6 -0.1352 7.6162 -3.4329 21 7 0.1222 8.3780 -2.3923 22 14 -0.9132 8.3552 -4.9619 23 1 -1.0996 7.2946 -5.9845 24 1 -2.2316 8.9421 -4.6121 25 1 -0.0274 9.4163 -5.5047 26 1 -0.3634 0.5855 0.8445 27 1 -0.3634 0.4385 -0.9294 28 1 -0.3634 -1.0242 0.0849 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9351 2.4655 0.0493 32 1 3.8408 1.0408 1.1121 33 1 5.9764 1.5754 -0.9637 34 1 5.8825 0.1508 0.0993 35 1 5.4362 -0.3334 -2.8863 36 1 6.9237 -1.8197 -0.5598 37 1 6.6526 -2.4704 -2.2638 38 1 7.9447 -0.5073 -3.2200 39 1 8.2164 0.1438 -1.5158 40 1 2.3141 1.8678 -1.9956 41 1 2.5310 3.9635 -0.8502 42 1 0.8588 3.7672 -0.2732 43 1 1.7491 6.1674 -1.9643 44 1 0.1308 5.8185 -1.3103 45 1 -0.0917 9.3238 -2.4189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356619010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:39 Heat of formation + Delta-G solvation = -37.648421 kcal Electronic energy + Delta-G solvation = -21763.117156 eV Core-core repulsion = 18586.961962 eV Total energy + Delta-G solvation = -3176.155195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97485 -38.83703 -37.87325 -36.58803 -35.59584 -34.24749 -32.23891 -29.89097 -28.12061 -27.20017 -24.76844 -23.82549 -23.48659 -23.29630 -21.68912 -21.25149 -18.56329 -18.24684 -17.83423 -17.10453 -16.81166 -16.56229 -16.20548 -15.79692 -15.43742 -15.00071 -14.85452 -14.45249 -14.39597 -14.17407 -13.89065 -13.58917 -13.44582 -13.23962 -13.06179 -12.98305 -12.71056 -12.47238 -12.43850 -12.34040 -12.17154 -12.04251 -11.94306 -11.68963 -11.52673 -11.37590 -11.35132 -11.20343 -11.04318 -10.55329 -10.46658 -9.28705 -8.19612 -6.27349 1.38740 1.41694 1.52338 1.96767 1.99628 2.41436 2.49644 2.90254 3.15647 3.27802 3.28309 3.80946 3.91953 3.93706 4.00944 4.13712 4.26738 4.27696 4.35439 4.39909 4.48676 4.50992 4.62141 4.67649 4.70505 4.72385 4.82067 4.93799 4.96206 4.96625 5.01178 5.18013 5.19191 5.21006 5.29632 5.47738 5.50623 5.64203 5.69332 5.79931 6.07962 6.20913 6.29875 6.40327 6.77627 6.88132 7.41079 8.91463 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.003521 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.000241 B = 7949.280568 C = 8904.016820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C 0.091 3.909 4 H 0.107 0.893 5 C 0.029 3.971 6 O -0.395 6.395 7 C 0.094 3.906 8 C -0.174 4.174 9 C -0.166 4.166 10 C -0.170 4.170 11 N -0.681 5.681 12 C 0.077 3.923 13 C 0.019 3.981 14 H 0.121 0.879 15 C 0.252 3.748 16 N -0.507 5.507 17 C 0.040 3.960 18 C -0.538 4.538 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.285 1.285 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.338 0.662 41 H 0.028 0.972 42 H 0.109 0.891 43 H -0.001 1.001 44 H 0.038 0.962 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -18.882 9.863 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.019 4.019 4 H 0.125 0.875 5 C -0.049 4.049 6 O -0.315 6.315 7 C 0.018 3.982 8 C -0.192 4.192 9 C -0.203 4.203 10 C -0.207 4.207 11 N -0.312 5.312 12 C -0.053 4.053 13 C -0.002 4.002 14 H 0.139 0.861 15 C -0.064 4.064 16 N -0.185 5.185 17 C 0.001 3.999 18 C -0.576 4.576 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.211 1.211 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.047 0.953 42 H 0.127 0.873 43 H 0.018 0.982 44 H 0.056 0.944 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.493 -19.147 8.627 22.654 hybrid contribution 0.542 1.431 -0.548 1.626 sum 9.035 -17.716 8.079 21.466 Atomic orbital electron populations 1.21632 0.95186 1.00921 1.02065 1.21307 0.96304 0.94277 1.01672 1.21893 0.90242 0.96965 0.92782 0.87528 1.23355 0.96039 0.93934 0.91578 1.87851 1.20136 1.70493 1.53016 1.22032 0.80816 0.98044 0.97350 1.22109 0.95654 1.01176 1.00279 1.23144 1.02747 0.91937 1.02470 1.23074 0.92259 1.02223 1.03179 1.60571 1.54905 1.07850 1.07854 1.21984 1.00147 0.87197 0.95950 1.19241 0.93700 0.99201 0.88097 0.86120 1.29706 0.93026 0.90060 0.93654 1.81015 1.13133 1.12257 1.12104 1.18980 0.96296 0.87717 0.96914 1.21585 1.40485 0.94250 1.01289 0.92968 1.25703 0.96349 0.97889 0.98818 1.70037 1.48952 1.06294 1.31002 0.85648 0.78497 0.78349 0.80109 1.19499 1.19713 1.21115 0.92596 0.93027 0.92983 0.92994 0.90977 0.94208 0.90972 0.93896 0.91729 0.88816 0.87633 0.88087 0.88025 0.87765 0.84422 0.95348 0.87289 0.98244 0.94374 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.75 71.98 0.70 -1.98 16 2 C -0.10 -1.89 5.31 30.59 0.16 -1.73 16 3 C 0.09 1.86 2.41 44.91 0.11 1.97 16 4 H 0.11 1.88 7.69 -2.39 -0.02 1.87 16 5 C 0.03 0.59 5.61 71.98 0.40 0.99 16 6 O -0.40 -9.43 8.93 -148.98 -1.33 -10.76 16 7 C 0.09 1.91 6.22 71.98 0.45 2.36 16 8 C -0.17 -3.46 6.05 -10.79 -0.07 -3.52 16 9 C -0.17 -2.49 10.18 30.62 0.31 -2.18 16 10 C -0.17 -2.66 10.25 30.62 0.31 -2.35 16 11 N -0.68 -17.70 5.77 -491.58 -2.83 -20.53 16 12 C 0.08 2.21 4.94 86.30 0.43 2.63 16 13 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 14 H 0.12 4.22 8.14 -2.38 -0.02 4.20 16 15 C 0.25 10.45 13.07 89.44 1.17 11.62 16 16 N -0.51 -22.90 18.54 20.00 0.37 -22.53 16 17 C 0.04 1.85 4.42 29.85 0.13 1.98 16 18 C -0.54 -28.85 8.60 25.60 0.22 -28.63 16 19 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 20 C 0.01 0.62 5.46 84.66 0.46 1.08 16 21 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 22 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.17 7.90 -2.39 -0.02 1.15 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.20 7.75 -2.39 -0.02 1.18 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.88 7.54 -2.39 -0.02 0.86 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 1.33 8.03 -2.39 -0.02 1.31 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.34 10.11 7.14 -89.70 -0.64 9.47 16 41 H 0.03 0.83 7.57 -2.39 -0.02 0.81 16 42 H 0.11 2.73 7.92 -2.39 -0.02 2.71 16 43 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 44 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -62.72 375.10 3.59 -59.14 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.31 Total: 18.70 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.76 Total: -17.06 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -2.18 Total: -95.92 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.33 Total: -10.76 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.72 3.59 -59.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.490 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds