Wall clock time and date at job start Tue Mar 31 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 H 1.08995 * 109.46851 * 54.24207 * 3 2 1 5 5 C 1.53001 * 109.47117 * 174.24171 * 3 2 1 6 6 O 1.42907 * 109.47175 * 55.00223 * 5 3 2 7 7 C 1.42892 * 113.99624 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.46926 * 179.97438 * 7 6 5 9 9 C 1.53009 * 117.49872 * 243.74879 * 8 7 6 10 10 C 1.53002 * 117.50283 * 175.08958 * 8 7 6 11 11 N 1.46901 * 109.46940 * 294.24277 * 3 2 1 12 12 C 1.46900 * 111.00143 * 152.80934 * 11 3 2 13 13 C 1.53001 * 109.47368 * 174.81069 * 12 11 3 14 14 H 1.09006 * 109.46924 * 304.99807 * 13 12 11 15 15 C 1.47202 * 109.47186 * 64.99718 * 13 12 11 16 16 N 5.43144 * 61.85935 * 315.34482 * 2 1 3 17 17 C 1.52994 * 109.47181 * 184.99732 * 13 12 11 18 18 C 1.50698 * 109.47321 * 174.99646 * 17 13 12 19 19 H 1.08005 * 120.00014 * 0.02562 * 18 17 13 20 20 C 1.37883 * 120.00354 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99614 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47271 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47217 * 119.99885 * 22 20 18 25 25 H 1.48506 * 109.46723 * 240.00248 * 22 20 18 26 26 H 1.09002 * 109.47102 * 298.65413 * 1 2 3 27 27 H 1.09007 * 109.47235 * 58.65204 * 1 2 3 28 28 H 1.09005 * 109.47565 * 178.64963 * 1 2 3 29 29 H 1.09004 * 109.46986 * 239.99657 * 2 1 3 30 30 H 1.08996 * 109.47116 * 120.00203 * 2 1 3 31 31 H 1.09002 * 109.46698 * 174.99553 * 5 3 2 32 32 H 1.08992 * 109.47023 * 295.00040 * 5 3 2 33 33 H 1.08995 * 109.47852 * 299.99648 * 7 6 5 34 34 H 1.09007 * 109.47469 * 59.99852 * 7 6 5 35 35 H 1.08994 * 115.55333 * 29.41371 * 8 7 6 36 36 H 1.08997 * 117.49391 * 359.97438 * 9 8 7 37 37 H 1.08994 * 117.49638 * 145.01830 * 9 8 7 38 38 H 1.09002 * 117.50129 * 214.98131 * 10 8 7 39 39 H 1.09005 * 117.49327 * 359.97438 * 10 8 7 40 40 H 1.00899 * 111.00240 * 28.85274 * 11 3 2 41 41 H 1.08997 * 109.47311 * 54.80545 * 12 11 3 42 42 H 1.09006 * 109.46820 * 294.81154 * 12 11 3 43 43 H 1.08998 * 109.47160 * 295.00210 * 17 13 12 44 44 H 1.09007 * 109.47163 * 54.99938 * 17 13 12 45 45 H 0.97001 * 119.99656 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9852 0.8339 5 6 3.5631 1.4449 0.1447 6 8 4.1405 0.6364 -0.8825 7 6 5.5672 0.5713 -0.8378 8 6 6.0732 -0.3165 -1.9766 9 6 6.8052 -1.6051 -1.5959 10 6 7.5871 -0.4216 -2.1713 11 7 1.6670 2.0937 -1.2629 12 6 1.5355 3.5462 -1.0874 13 6 1.2747 4.2024 -2.4448 14 1 2.0623 3.9185 -3.1428 15 6 -0.0271 3.7534 -2.9648 16 7 -1.0318 3.4069 -3.3662 17 6 1.2616 5.7236 -2.2817 18 6 1.1277 6.3727 -3.6351 19 1 1.0584 5.7614 -4.5228 20 6 1.0926 7.7471 -3.7402 21 7 1.1765 8.4915 -2.6592 22 14 0.9259 8.5517 -5.4177 23 1 0.8514 7.5016 -6.4651 24 1 -0.3102 9.3740 -5.4517 25 1 2.1047 9.4190 -5.6700 26 1 -0.3633 0.4928 0.9018 27 1 -0.3634 0.5347 -0.8777 28 1 -0.3634 -1.0274 -0.0242 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8899 31 1 3.9349 2.4656 0.0557 32 1 3.8360 1.0425 1.1202 33 1 5.9804 1.5740 -0.9474 34 1 5.8821 0.1511 0.1174 35 1 5.4483 -0.3377 -2.8693 36 1 6.9267 -1.8200 -0.5343 37 1 6.6621 -2.4737 -2.2385 38 1 7.9581 -0.5121 -3.1923 39 1 8.2227 0.1422 -1.4884 40 1 0.8187 1.6965 -1.6378 41 1 2.4559 3.9456 -0.6616 42 1 0.7031 3.7571 -0.4160 43 1 0.4192 6.0145 -1.6542 44 1 2.1917 6.0469 -1.8142 45 1 1.1514 9.4584 -2.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356619011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:42 Heat of formation + Delta-G solvation = -17.979127 kcal Electronic energy + Delta-G solvation = -21696.578978 eV Core-core repulsion = 18521.276708 eV Total energy + Delta-G solvation = -3175.302270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.86510 -37.78941 -36.62897 -35.55784 -33.90017 -32.62662 -30.75730 -29.03018 -26.76356 -25.97070 -23.71105 -22.60110 -22.52098 -21.79163 -20.82677 -20.10832 -16.97958 -16.66016 -16.56629 -16.21891 -15.69398 -15.08299 -14.95978 -14.79353 -14.50416 -13.81014 -13.49694 -13.26114 -12.93176 -12.76520 -12.71961 -12.46116 -12.15483 -12.04993 -11.75013 -11.71549 -11.39461 -11.23827 -11.17199 -11.04655 -10.91782 -10.70681 -10.62687 -10.50185 -10.47912 -10.32354 -10.22005 -9.51866 -9.41963 -9.19138 -8.44512 -8.21604 -6.08393 -4.11014 3.29551 3.37626 3.42771 3.43461 3.61469 3.67539 3.77112 4.25896 4.43935 4.62390 4.70715 4.75521 4.83138 4.86146 4.99208 5.11605 5.16514 5.28680 5.29826 5.40472 5.42295 5.45553 5.54255 5.56977 5.61165 5.64053 5.67134 5.78810 5.83473 5.88153 5.89686 6.06190 6.08905 6.17371 6.29197 6.44290 6.58830 7.14095 7.36308 7.45234 7.52433 7.56550 7.87388 8.25295 8.44828 8.93915 9.54374 11.02593 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.003728 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.260809 B = 7508.577018 C = 8733.254565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C 0.089 3.911 4 H 0.058 0.942 5 C 0.076 3.924 6 O -0.364 6.364 7 C 0.092 3.908 8 C -0.147 4.147 9 C -0.181 4.181 10 C -0.176 4.176 11 N -0.679 5.679 12 C 0.066 3.934 13 C 0.008 3.992 14 H 0.111 0.889 15 C 0.243 3.757 16 N -0.479 5.479 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.341 0.659 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.024 0.976 44 H 0.039 0.961 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -17.695 8.587 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C -0.021 4.021 4 H 0.076 0.924 5 C -0.002 4.002 6 O -0.283 6.283 7 C 0.015 3.985 8 C -0.165 4.165 9 C -0.218 4.218 10 C -0.213 4.213 11 N -0.313 5.313 12 C -0.064 4.064 13 C -0.014 4.014 14 H 0.129 0.871 15 C -0.073 4.073 16 N -0.156 5.156 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.161 0.839 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.997 -18.104 7.672 21.623 hybrid contribution -0.375 1.031 -0.092 1.101 sum 8.622 -17.073 7.580 20.574 Atomic orbital electron populations 1.21865 0.96184 1.01832 1.01740 1.21602 0.95158 0.95950 1.03209 1.21585 0.93501 0.95088 0.91921 0.92382 1.22523 0.93436 0.94639 0.89595 1.87963 1.18120 1.69820 1.52350 1.21937 0.82434 0.98156 0.95959 1.22139 0.94460 0.98923 1.00951 1.23061 1.04668 0.92518 1.01519 1.22972 0.93631 1.02209 1.02512 1.60533 1.40607 1.03700 1.26421 1.22131 1.01205 0.86946 0.96104 1.19305 0.86961 0.99662 0.95450 0.87127 1.29310 0.94674 0.90945 0.92381 1.81022 1.12577 1.12031 1.09962 1.19163 0.98750 0.84553 0.98165 1.21199 1.50741 0.91574 0.92726 0.92435 1.24956 0.94968 0.97458 0.96645 1.69950 1.50264 1.05139 1.27759 0.86539 0.77688 0.79481 0.84409 1.19649 1.21024 1.20837 0.92929 0.92635 0.92472 0.90091 0.91692 0.92932 0.93838 0.92968 0.93955 0.86678 0.88933 0.88813 0.88489 0.88787 0.83895 0.89392 0.94846 0.95811 0.94311 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.78 37.15 0.36 -1.26 16 2 C -0.12 -1.26 5.20 -26.73 -0.14 -1.40 16 3 C 0.09 1.01 2.43 -67.71 -0.16 0.85 16 4 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 5 C 0.08 0.83 5.71 37.16 0.21 1.04 16 6 O -0.36 -4.48 9.53 -35.23 -0.34 -4.82 16 7 C 0.09 0.94 6.22 37.16 0.23 1.17 16 8 C -0.15 -1.42 6.05 -90.61 -0.55 -1.97 16 9 C -0.18 -1.45 10.18 -26.69 -0.27 -1.72 16 10 C -0.18 -1.40 10.25 -26.69 -0.27 -1.68 16 11 N -0.68 -9.35 6.21 -106.72 -0.66 -10.02 16 12 C 0.07 1.00 4.88 -3.82 -0.02 0.98 16 13 C 0.01 0.15 2.42 -93.41 -0.23 -0.07 16 14 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 15 C 0.24 5.03 13.07 -20.76 -0.27 4.76 16 16 N -0.48 -10.60 18.54 42.15 0.78 -9.82 16 17 C 0.03 0.76 4.42 -27.89 -0.12 0.63 16 18 C -0.52 -14.11 8.60 -34.44 -0.30 -14.40 16 19 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.65 6.44 -51.92 -0.33 0.31 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.96 7.76 -51.93 -0.40 0.55 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.59 7.46 -51.93 -0.39 0.21 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.34 4.91 5.71 -39.29 -0.22 4.68 16 41 H 0.09 1.24 7.43 -51.93 -0.39 0.86 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -29.85 373.36 -8.50 -38.34 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.00 Total: 0.61 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.62 Total: -11.47 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.85 Total: -44.76 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.34 Total: -4.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.85 -8.50 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.366 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds