Wall clock time and date at job start Tue Mar 31 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 H 1.08995 * 109.46851 * 54.24207 * 3 2 1 5 5 C 1.53001 * 109.47117 * 174.24171 * 3 2 1 6 6 O 1.42907 * 109.47175 * 55.00223 * 5 3 2 7 7 C 1.42892 * 113.99624 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.46926 * 179.97438 * 7 6 5 9 9 C 1.53009 * 117.49872 * 243.74879 * 8 7 6 10 10 C 1.53002 * 117.50283 * 175.08958 * 8 7 6 11 11 N 1.46901 * 109.46940 * 294.24277 * 3 2 1 12 12 C 1.46900 * 111.00143 * 152.80934 * 11 3 2 13 13 C 1.53001 * 109.47368 * 174.81069 * 12 11 3 14 14 H 1.09006 * 109.46924 * 304.99807 * 13 12 11 15 15 C 1.47202 * 109.47186 * 64.99718 * 13 12 11 16 16 N 5.43144 * 61.85935 * 315.34482 * 2 1 3 17 17 C 1.52994 * 109.47181 * 184.99732 * 13 12 11 18 18 C 1.50698 * 109.47321 * 174.99646 * 17 13 12 19 19 H 1.08005 * 120.00014 * 0.02562 * 18 17 13 20 20 C 1.37883 * 120.00354 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99614 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47271 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47217 * 119.99885 * 22 20 18 25 25 H 1.48506 * 109.46723 * 240.00248 * 22 20 18 26 26 H 1.09002 * 109.47102 * 298.65413 * 1 2 3 27 27 H 1.09007 * 109.47235 * 58.65204 * 1 2 3 28 28 H 1.09005 * 109.47565 * 178.64963 * 1 2 3 29 29 H 1.09004 * 109.46986 * 239.99657 * 2 1 3 30 30 H 1.08996 * 109.47116 * 120.00203 * 2 1 3 31 31 H 1.09002 * 109.46698 * 174.99553 * 5 3 2 32 32 H 1.08992 * 109.47023 * 295.00040 * 5 3 2 33 33 H 1.08995 * 109.47852 * 299.99648 * 7 6 5 34 34 H 1.09007 * 109.47469 * 59.99852 * 7 6 5 35 35 H 1.08994 * 115.55333 * 29.41371 * 8 7 6 36 36 H 1.08997 * 117.49391 * 359.97438 * 9 8 7 37 37 H 1.08994 * 117.49638 * 145.01830 * 9 8 7 38 38 H 1.09002 * 117.50129 * 214.98131 * 10 8 7 39 39 H 1.09005 * 117.49327 * 359.97438 * 10 8 7 40 40 H 1.00899 * 111.00240 * 28.85274 * 11 3 2 41 41 H 1.08997 * 109.47311 * 54.80545 * 12 11 3 42 42 H 1.09006 * 109.46820 * 294.81154 * 12 11 3 43 43 H 1.08998 * 109.47160 * 295.00210 * 17 13 12 44 44 H 1.09007 * 109.47163 * 54.99938 * 17 13 12 45 45 H 0.97001 * 119.99656 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9852 0.8339 5 6 3.5631 1.4449 0.1447 6 8 4.1405 0.6364 -0.8825 7 6 5.5672 0.5713 -0.8378 8 6 6.0732 -0.3165 -1.9766 9 6 6.8052 -1.6051 -1.5959 10 6 7.5871 -0.4216 -2.1713 11 7 1.6670 2.0937 -1.2629 12 6 1.5355 3.5462 -1.0874 13 6 1.2747 4.2024 -2.4448 14 1 2.0623 3.9185 -3.1428 15 6 -0.0271 3.7534 -2.9648 16 7 -1.0318 3.4069 -3.3662 17 6 1.2616 5.7236 -2.2817 18 6 1.1277 6.3727 -3.6351 19 1 1.0584 5.7614 -4.5228 20 6 1.0926 7.7471 -3.7402 21 7 1.1765 8.4915 -2.6592 22 14 0.9259 8.5517 -5.4177 23 1 0.8514 7.5016 -6.4651 24 1 -0.3102 9.3740 -5.4517 25 1 2.1047 9.4190 -5.6700 26 1 -0.3633 0.4928 0.9018 27 1 -0.3634 0.5347 -0.8777 28 1 -0.3634 -1.0274 -0.0242 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8899 31 1 3.9349 2.4656 0.0557 32 1 3.8360 1.0425 1.1202 33 1 5.9804 1.5740 -0.9474 34 1 5.8821 0.1511 0.1174 35 1 5.4483 -0.3377 -2.8693 36 1 6.9267 -1.8200 -0.5343 37 1 6.6621 -2.4737 -2.2385 38 1 7.9581 -0.5121 -3.1923 39 1 8.2227 0.1422 -1.4884 40 1 0.8187 1.6965 -1.6378 41 1 2.4559 3.9456 -0.6616 42 1 0.7031 3.7571 -0.4160 43 1 0.4192 6.0145 -1.6542 44 1 2.1917 6.0469 -1.8142 45 1 1.1514 9.4584 -2.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356619011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:42 Heat of formation + Delta-G solvation = -34.708578 kcal Electronic energy + Delta-G solvation = -21697.304421 eV Core-core repulsion = 18521.276708 eV Total energy + Delta-G solvation = -3176.027713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79781 -38.82580 -37.81421 -36.61991 -35.63295 -34.26415 -32.13631 -30.01608 -28.11249 -27.15540 -24.84150 -23.87760 -23.44883 -23.19641 -21.56921 -21.01122 -18.56668 -18.25965 -17.69177 -17.22433 -16.81108 -16.47982 -15.98701 -15.81853 -15.53622 -15.01268 -14.80325 -14.51943 -14.24657 -14.09241 -13.93274 -13.74816 -13.51440 -13.24689 -13.06571 -13.01482 -12.68315 -12.50541 -12.45221 -12.33870 -12.16048 -12.03189 -11.89781 -11.79883 -11.41578 -11.35915 -11.25143 -11.12797 -10.99559 -10.55814 -10.23244 -9.29838 -8.20054 -6.27967 1.38527 1.41360 1.52148 1.94512 1.97423 2.41173 2.70695 3.05487 3.15017 3.20039 3.26071 3.90486 3.93480 4.02990 4.05755 4.19123 4.26521 4.31284 4.40401 4.43162 4.52557 4.60979 4.65592 4.70342 4.76900 4.81790 4.82074 4.84656 4.95161 4.98260 4.99880 5.06048 5.11807 5.27552 5.28879 5.32940 5.45458 5.46784 5.62873 5.79168 6.08525 6.22484 6.40309 6.53316 6.75619 6.86996 7.40483 8.91051 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.003728 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.260809 B = 7508.577018 C = 8733.254565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.069 0.931 5 C 0.074 3.926 6 O -0.385 6.385 7 C 0.091 3.909 8 C -0.168 4.168 9 C -0.173 4.173 10 C -0.169 4.169 11 N -0.684 5.684 12 C 0.078 3.922 13 C 0.020 3.980 14 H 0.117 0.883 15 C 0.253 3.747 16 N -0.505 5.505 17 C 0.040 3.960 18 C -0.539 4.539 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.336 0.664 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.036 0.964 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -18.620 9.186 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.023 4.023 4 H 0.087 0.913 5 C -0.003 4.003 6 O -0.304 6.304 7 C 0.015 3.985 8 C -0.186 4.186 9 C -0.210 4.210 10 C -0.206 4.206 11 N -0.318 5.318 12 C -0.052 4.052 13 C -0.002 4.002 14 H 0.135 0.865 15 C -0.063 4.063 16 N -0.182 5.182 17 C 0.001 3.999 18 C -0.577 4.577 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.119 0.881 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.011 -19.042 8.272 23.049 hybrid contribution -0.676 1.285 -0.270 1.477 sum 9.334 -17.757 8.002 21.598 Atomic orbital electron populations 1.21846 0.96112 1.02285 1.01155 1.21528 0.95093 0.95220 1.03269 1.21717 0.94103 0.95516 0.90963 0.91279 1.22587 0.92859 0.94476 0.90411 1.87940 1.19307 1.70058 1.53098 1.22017 0.81473 0.98193 0.96834 1.22110 0.95418 1.00612 1.00457 1.23138 1.03495 0.92146 1.02236 1.23059 0.92467 1.01984 1.03110 1.60521 1.40324 1.02796 1.28115 1.21964 1.01876 0.87812 0.93552 1.19202 0.86202 0.97019 0.97775 0.86536 1.29642 0.94747 0.90308 0.91645 1.81018 1.13376 1.12872 1.10979 1.18977 0.97474 0.87373 0.96074 1.21581 1.50120 0.91965 0.94022 0.92992 1.25704 0.94946 0.98241 0.99831 1.70035 1.51283 1.05458 1.29478 0.85643 0.77831 0.78567 0.80539 1.19514 1.21016 1.19727 0.92266 0.94444 0.91491 0.91665 0.89896 0.93449 0.91560 0.93354 0.92422 0.88571 0.87952 0.88367 0.88019 0.87810 0.84414 0.88079 0.94684 0.98004 0.94619 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.78 71.98 0.70 -2.29 16 2 C -0.11 -2.17 5.20 30.59 0.16 -2.01 16 3 C 0.09 1.82 2.43 44.92 0.11 1.93 16 4 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 5 C 0.07 1.48 5.71 71.98 0.41 1.89 16 6 O -0.38 -9.05 9.53 -148.98 -1.42 -10.46 16 7 C 0.09 1.75 6.22 71.98 0.45 2.20 16 8 C -0.17 -3.13 6.05 -10.79 -0.07 -3.19 16 9 C -0.17 -2.50 10.18 30.62 0.31 -2.19 16 10 C -0.17 -2.44 10.25 30.62 0.31 -2.13 16 11 N -0.68 -18.18 6.21 -491.57 -3.05 -21.24 16 12 C 0.08 2.28 4.88 86.30 0.42 2.70 16 13 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 14 H 0.12 4.24 8.14 -2.38 -0.02 4.22 16 15 C 0.25 10.40 13.07 89.44 1.17 11.57 16 16 N -0.50 -22.34 18.54 20.01 0.37 -21.97 16 17 C 0.04 1.87 4.42 29.85 0.13 2.00 16 18 C -0.54 -29.04 8.60 25.60 0.22 -28.82 16 19 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 20 C 0.01 0.65 5.46 84.66 0.46 1.11 16 21 N -0.92 -53.21 13.29 21.45 0.28 -52.93 16 22 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.85 6.44 -2.38 -0.02 0.83 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.06 1.48 7.76 -2.39 -0.02 1.46 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.99 7.46 -2.39 -0.02 0.97 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.91 7.87 -2.38 -0.02 0.89 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 1.27 8.03 -2.39 -0.02 1.25 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.34 9.50 5.71 -89.69 -0.51 8.99 16 41 H 0.10 2.70 7.43 -2.39 -0.02 2.69 16 42 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -62.86 373.36 3.41 -59.45 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.44 Total: 17.70 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.76 Total: -16.52 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -2.40 Total: -96.14 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.42 Total: -10.46 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.86 3.41 -59.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.742 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds