Wall clock time and date at job start Tue Mar 31 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 H 1.09004 * 109.46917 * 305.76451 * 3 2 1 5 5 C 1.53004 * 109.47412 * 185.76739 * 3 2 1 6 6 O 1.42900 * 109.46723 * 304.99588 * 5 3 2 7 7 C 1.42901 * 113.99789 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47140 * 180.02562 * 7 6 5 9 9 C 1.53004 * 117.50018 * 243.74649 * 8 7 6 10 10 C 1.53006 * 117.50089 * 175.08560 * 8 7 6 11 11 N 1.46902 * 109.47162 * 65.76378 * 3 2 1 12 12 C 1.46902 * 110.99778 * 206.36507 * 11 3 2 13 13 C 1.53002 * 109.46827 * 184.99917 * 12 11 3 14 14 H 1.09010 * 109.46919 * 305.00069 * 13 12 11 15 15 C 1.47203 * 109.47448 * 64.99554 * 13 12 11 16 16 N 5.84480 * 108.16821 * 46.14182 * 2 1 3 17 17 C 1.52995 * 109.47173 * 185.00140 * 13 12 11 18 18 C 1.50700 * 109.47217 * 174.99623 * 17 13 12 19 19 H 1.08001 * 120.00010 * 0.02562 * 18 17 13 20 20 C 1.37879 * 120.00174 * 179.97438 * 18 17 13 21 21 N 1.31515 * 119.99701 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00263 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46900 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47475 * 119.99684 * 22 20 18 25 25 H 1.48498 * 109.47175 * 239.99761 * 22 20 18 26 26 H 1.08998 * 109.47004 * 174.41661 * 1 2 3 27 27 H 1.09005 * 109.47118 * 294.40983 * 1 2 3 28 28 H 1.08999 * 109.47428 * 54.41177 * 1 2 3 29 29 H 1.09004 * 109.47226 * 239.99986 * 2 1 3 30 30 H 1.09004 * 109.47852 * 119.99780 * 2 1 3 31 31 H 1.09000 * 109.46898 * 64.99648 * 5 3 2 32 32 H 1.08995 * 109.47380 * 185.00007 * 5 3 2 33 33 H 1.08999 * 109.47294 * 299.99923 * 7 6 5 34 34 H 1.08998 * 109.47263 * 60.00355 * 7 6 5 35 35 H 1.09001 * 115.55340 * 29.41697 * 8 7 6 36 36 H 1.08995 * 117.49447 * 0.02562 * 9 8 7 37 37 H 1.09002 * 117.49992 * 145.01627 * 9 8 7 38 38 H 1.08994 * 117.49966 * 214.98001 * 10 8 7 39 39 H 1.08996 * 117.49667 * 0.02562 * 10 8 7 40 40 H 1.00899 * 110.99508 * 330.31611 * 11 3 2 41 41 H 1.08994 * 109.47149 * 64.99929 * 12 11 3 42 42 H 1.08994 * 109.46941 * 304.99115 * 12 11 3 43 43 H 1.09000 * 109.47445 * 294.99487 * 17 13 12 44 44 H 1.08994 * 109.47503 * 54.99902 * 17 13 12 45 45 H 0.97003 * 119.99728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9853 -0.8339 5 6 3.5631 1.4450 -0.1450 6 8 4.1406 0.6366 0.8822 7 6 5.5673 0.5706 0.8367 8 6 6.0734 -0.3171 1.9754 9 6 6.9408 0.3397 3.0512 10 6 7.5744 -0.6088 2.0302 11 7 1.6671 2.0937 1.2629 12 6 1.5547 3.5484 1.0919 13 6 1.2888 4.2023 2.4494 14 1 0.4084 3.7488 2.9050 15 6 2.4535 4.0022 3.3271 16 7 3.3524 3.8478 4.0043 17 6 1.0479 5.7007 2.2552 18 6 0.6654 6.3230 3.5734 19 1 0.6010 5.7110 4.4609 20 6 0.3987 7.6737 3.6465 21 7 0.4786 8.4192 2.5660 22 14 -0.0747 8.4452 5.2805 23 1 -0.0929 7.3995 6.3348 24 1 0.9151 9.4927 5.6387 25 1 -1.4232 9.0566 5.1670 26 1 -0.3633 -1.0228 -0.1000 27 1 -0.3633 0.4247 0.9358 28 1 -0.3634 0.5980 -0.8357 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8358 1.0427 -1.1206 32 1 3.9349 2.4657 -0.0560 33 1 5.8814 0.1499 -0.1185 34 1 5.9811 1.5731 0.9457 35 1 5.3949 -1.1098 2.2907 36 1 7.1505 1.4043 2.9478 37 1 6.8331 -0.0211 4.0741 38 1 7.8833 -1.5931 2.3819 39 1 8.2014 -0.1678 1.2553 40 1 0.8116 1.7056 1.6310 41 1 0.7314 3.7719 0.4135 42 1 2.4839 3.9383 0.6767 43 1 1.9585 6.1698 1.8827 44 1 0.2424 5.8490 1.5362 45 1 0.2914 9.3695 2.6175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356619013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:48 Heat of formation + Delta-G solvation = -17.788338 kcal Electronic energy + Delta-G solvation = -21876.061515 eV Core-core repulsion = 18700.767518 eV Total energy + Delta-G solvation = -3175.293997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.82383 -37.70410 -36.50998 -35.51061 -33.78931 -32.62735 -30.74551 -28.99804 -26.73438 -25.97541 -23.69743 -22.51958 -22.47710 -21.71098 -20.77215 -20.12984 -17.09478 -16.94379 -16.37302 -15.82221 -15.62065 -15.23506 -14.90277 -14.58363 -14.26505 -13.96572 -13.67421 -13.24805 -12.87498 -12.76420 -12.67291 -12.24940 -12.11991 -11.88748 -11.64192 -11.62389 -11.46015 -11.15983 -11.08515 -11.02157 -10.92827 -10.67166 -10.60639 -10.50469 -10.45213 -10.23402 -10.16102 -9.50533 -9.38011 -9.18175 -8.44582 -8.17902 -6.08225 -4.10843 3.29522 3.37748 3.42869 3.47624 3.83709 3.86484 3.94994 4.27309 4.44197 4.69646 4.76107 4.79398 4.86736 4.98741 5.01958 5.11832 5.25388 5.30129 5.31035 5.42937 5.45371 5.49767 5.52790 5.59969 5.61563 5.68425 5.82031 5.82953 5.83785 5.89304 5.99167 6.05545 6.09148 6.12254 6.30013 6.44057 6.55569 7.15643 7.39050 7.44777 7.54797 7.60446 7.87816 8.25705 8.69427 8.94494 9.54556 11.02774 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.003894 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.660321 B = 7188.589775 C = 8453.847128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.091 3.909 4 H 0.058 0.942 5 C 0.074 3.926 6 O -0.363 6.363 7 C 0.093 3.907 8 C -0.147 4.147 9 C -0.173 4.173 10 C -0.179 4.179 11 N -0.680 5.680 12 C 0.065 3.935 13 C 0.011 3.989 14 H 0.098 0.902 15 C 0.255 3.745 16 N -0.478 5.478 17 C 0.031 3.969 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.343 0.657 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.036 0.964 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -17.820 -8.953 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.019 4.019 4 H 0.076 0.924 5 C -0.003 4.003 6 O -0.281 6.281 7 C 0.016 3.984 8 C -0.165 4.165 9 C -0.210 4.210 10 C -0.216 4.216 11 N -0.313 5.313 12 C -0.065 4.065 13 C -0.011 4.011 14 H 0.116 0.884 15 C -0.062 4.062 16 N -0.154 5.154 17 C -0.007 4.007 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.163 0.837 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.899 -17.948 -7.618 20.682 hybrid contribution -1.243 0.952 -0.066 1.567 sum 5.656 -16.996 -7.684 19.491 Atomic orbital electron populations 1.21857 0.96032 1.01741 1.01884 1.21592 0.95275 0.95880 1.03136 1.21573 0.93333 0.95074 0.91882 0.92385 1.22527 0.93702 0.94519 0.89583 1.87961 1.18119 1.69704 1.52335 1.21926 0.82442 0.97773 0.96254 1.22079 0.93093 1.02199 0.99171 1.23053 1.03590 0.98887 0.95501 1.22975 0.94773 1.01076 1.02754 1.60464 1.40199 1.03831 1.26839 1.22123 1.01270 0.86830 0.96263 1.19167 0.90252 1.01379 0.90263 0.88440 1.28792 0.93836 0.90604 0.92918 1.80963 1.12154 1.11394 1.10933 1.19165 0.98148 0.85223 0.98191 1.21196 1.46888 0.93581 0.94527 0.92429 1.24957 0.95304 0.97305 0.96471 1.69951 1.49186 1.06206 1.27791 0.86541 0.78083 0.79398 0.84103 1.19643 1.20986 1.20890 0.92608 0.92360 0.92868 0.91821 0.90162 0.93846 0.93377 0.93675 0.93532 0.87070 0.88612 0.88689 0.88645 0.88913 0.83689 0.93418 0.90883 0.95677 0.94539 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.65 37.15 0.36 -1.01 16 2 C -0.12 -1.19 5.21 -26.73 -0.14 -1.33 16 3 C 0.09 1.03 2.43 -67.71 -0.16 0.87 16 4 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 5 C 0.07 0.89 5.70 37.16 0.21 1.11 16 6 O -0.36 -5.01 9.53 -35.23 -0.34 -5.34 16 7 C 0.09 1.11 6.22 37.16 0.23 1.34 16 8 C -0.15 -1.68 6.05 -90.62 -0.55 -2.23 16 9 C -0.17 -1.97 10.18 -26.69 -0.27 -2.24 16 10 C -0.18 -1.66 10.26 -26.69 -0.27 -1.94 16 11 N -0.68 -9.16 5.94 -106.72 -0.63 -9.80 16 12 C 0.07 0.98 4.82 -3.82 -0.02 0.96 16 13 C 0.01 0.21 2.40 -93.41 -0.22 -0.01 16 14 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 15 C 0.26 5.52 13.67 -20.76 -0.28 5.23 16 16 N -0.48 -11.20 18.54 42.15 0.78 -10.42 16 17 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 18 C -0.52 -14.08 8.60 -34.44 -0.30 -14.37 16 19 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 6.66 -51.93 -0.35 0.17 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.93 7.76 -51.93 -0.40 0.52 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.34 4.24 6.64 -39.29 -0.26 3.98 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -30.84 374.52 -8.51 -39.35 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.04 Total: 0.46 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.64 Total: -11.41 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.88 Total: -45.16 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.34 Total: -5.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.84 -8.51 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.561 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds