Wall clock time and date at job start Tue Mar 31 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 H 1.09004 * 109.46917 * 305.76451 * 3 2 1 5 5 C 1.53004 * 109.47412 * 185.76739 * 3 2 1 6 6 O 1.42900 * 109.46723 * 304.99588 * 5 3 2 7 7 C 1.42901 * 113.99789 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47140 * 180.02562 * 7 6 5 9 9 C 1.53004 * 117.50018 * 243.74649 * 8 7 6 10 10 C 1.53006 * 117.50089 * 175.08560 * 8 7 6 11 11 N 1.46902 * 109.47162 * 65.76378 * 3 2 1 12 12 C 1.46902 * 110.99778 * 206.36507 * 11 3 2 13 13 C 1.53002 * 109.46827 * 184.99917 * 12 11 3 14 14 H 1.09010 * 109.46919 * 305.00069 * 13 12 11 15 15 C 1.47203 * 109.47448 * 64.99554 * 13 12 11 16 16 N 5.84480 * 108.16821 * 46.14182 * 2 1 3 17 17 C 1.52995 * 109.47173 * 185.00140 * 13 12 11 18 18 C 1.50700 * 109.47217 * 174.99623 * 17 13 12 19 19 H 1.08001 * 120.00010 * 0.02562 * 18 17 13 20 20 C 1.37879 * 120.00174 * 179.97438 * 18 17 13 21 21 N 1.31515 * 119.99701 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00263 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46900 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47475 * 119.99684 * 22 20 18 25 25 H 1.48498 * 109.47175 * 239.99761 * 22 20 18 26 26 H 1.08998 * 109.47004 * 174.41661 * 1 2 3 27 27 H 1.09005 * 109.47118 * 294.40983 * 1 2 3 28 28 H 1.08999 * 109.47428 * 54.41177 * 1 2 3 29 29 H 1.09004 * 109.47226 * 239.99986 * 2 1 3 30 30 H 1.09004 * 109.47852 * 119.99780 * 2 1 3 31 31 H 1.09000 * 109.46898 * 64.99648 * 5 3 2 32 32 H 1.08995 * 109.47380 * 185.00007 * 5 3 2 33 33 H 1.08999 * 109.47294 * 299.99923 * 7 6 5 34 34 H 1.08998 * 109.47263 * 60.00355 * 7 6 5 35 35 H 1.09001 * 115.55340 * 29.41697 * 8 7 6 36 36 H 1.08995 * 117.49447 * 0.02562 * 9 8 7 37 37 H 1.09002 * 117.49992 * 145.01627 * 9 8 7 38 38 H 1.08994 * 117.49966 * 214.98001 * 10 8 7 39 39 H 1.08996 * 117.49667 * 0.02562 * 10 8 7 40 40 H 1.00899 * 110.99508 * 330.31611 * 11 3 2 41 41 H 1.08994 * 109.47149 * 64.99929 * 12 11 3 42 42 H 1.08994 * 109.46941 * 304.99115 * 12 11 3 43 43 H 1.09000 * 109.47445 * 294.99487 * 17 13 12 44 44 H 1.08994 * 109.47503 * 54.99902 * 17 13 12 45 45 H 0.97003 * 119.99728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9853 -0.8339 5 6 3.5631 1.4450 -0.1450 6 8 4.1406 0.6366 0.8822 7 6 5.5673 0.5706 0.8367 8 6 6.0734 -0.3171 1.9754 9 6 6.9408 0.3397 3.0512 10 6 7.5744 -0.6088 2.0302 11 7 1.6671 2.0937 1.2629 12 6 1.5547 3.5484 1.0919 13 6 1.2888 4.2023 2.4494 14 1 0.4084 3.7488 2.9050 15 6 2.4535 4.0022 3.3271 16 7 3.3524 3.8478 4.0043 17 6 1.0479 5.7007 2.2552 18 6 0.6654 6.3230 3.5734 19 1 0.6010 5.7110 4.4609 20 6 0.3987 7.6737 3.6465 21 7 0.4786 8.4192 2.5660 22 14 -0.0747 8.4452 5.2805 23 1 -0.0929 7.3995 6.3348 24 1 0.9151 9.4927 5.6387 25 1 -1.4232 9.0566 5.1670 26 1 -0.3633 -1.0228 -0.1000 27 1 -0.3633 0.4247 0.9358 28 1 -0.3634 0.5980 -0.8357 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8358 1.0427 -1.1206 32 1 3.9349 2.4657 -0.0560 33 1 5.8814 0.1499 -0.1185 34 1 5.9811 1.5731 0.9457 35 1 5.3949 -1.1098 2.2907 36 1 7.1505 1.4043 2.9478 37 1 6.8331 -0.0211 4.0741 38 1 7.8833 -1.5931 2.3819 39 1 8.2014 -0.1678 1.2553 40 1 0.8116 1.7056 1.6310 41 1 0.7314 3.7719 0.4135 42 1 2.4839 3.9383 0.6767 43 1 1.9585 6.1698 1.8827 44 1 0.2424 5.8490 1.5362 45 1 0.2914 9.3695 2.6175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356619013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:47 Heat of formation + Delta-G solvation = -35.585584 kcal Electronic energy + Delta-G solvation = -21876.833261 eV Core-core repulsion = 18700.767518 eV Total energy + Delta-G solvation = -3176.065743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80963 -38.80111 -37.80859 -36.66807 -35.55974 -34.23501 -32.08730 -30.02203 -28.14078 -27.23447 -24.83349 -23.84103 -23.36392 -23.29318 -21.66028 -21.04868 -18.63819 -18.37022 -17.83877 -16.89811 -16.69007 -16.40357 -16.19420 -15.94085 -15.37910 -15.15645 -14.80637 -14.49780 -14.36099 -13.93827 -13.80235 -13.64025 -13.55541 -13.19495 -13.03261 -13.01045 -12.78073 -12.51220 -12.46063 -12.42016 -12.07463 -12.01673 -11.87113 -11.73943 -11.47602 -11.36778 -11.34356 -11.11160 -11.03245 -10.55608 -10.33642 -9.21596 -8.19649 -6.27477 1.38590 1.41763 1.52369 2.11484 2.19578 2.41541 2.60606 2.98189 3.15655 3.22889 3.40677 3.83419 3.90701 3.95871 4.00947 4.15402 4.32584 4.33907 4.36335 4.40648 4.45263 4.56876 4.61015 4.69011 4.72131 4.73952 4.77162 4.85659 4.90093 4.96636 5.01196 5.04501 5.17537 5.21615 5.23191 5.36771 5.47319 5.54080 5.62844 5.79657 6.09975 6.23143 6.44690 6.61135 6.84297 6.97759 7.41026 8.91471 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.003894 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.660321 B = 7188.589775 C = 8453.847128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.091 3.909 4 H 0.075 0.925 5 C 0.070 3.930 6 O -0.383 6.383 7 C 0.091 3.909 8 C -0.161 4.161 9 C -0.194 4.194 10 C -0.151 4.151 11 N -0.692 5.692 12 C 0.079 3.921 13 C 0.021 3.979 14 H 0.117 0.883 15 C 0.265 3.735 16 N -0.515 5.515 17 C 0.039 3.961 18 C -0.537 4.537 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.271 1.271 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.350 0.650 41 H 0.070 0.930 42 H 0.063 0.937 43 H -0.002 1.002 44 H 0.037 0.963 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -19.170 -9.742 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.018 4.018 4 H 0.092 0.908 5 C -0.008 4.008 6 O -0.302 6.302 7 C 0.015 3.985 8 C -0.179 4.179 9 C -0.231 4.231 10 C -0.188 4.188 11 N -0.327 5.327 12 C -0.052 4.052 13 C -0.001 4.001 14 H 0.135 0.865 15 C -0.051 4.051 16 N -0.193 5.193 17 C 0.000 4.000 18 C -0.576 4.576 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.171 0.829 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.055 0.945 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.309 -19.313 -8.408 21.989 hybrid contribution -1.037 1.359 0.167 1.718 sum 5.272 -17.954 -8.241 20.446 Atomic orbital electron populations 1.21835 0.94972 1.02475 1.01956 1.21503 0.96087 0.94592 1.02829 1.21673 0.92926 0.95964 0.91243 0.90771 1.22662 0.94167 0.93553 0.90386 1.87936 1.19045 1.69922 1.53324 1.22006 0.81743 0.97271 0.97517 1.22122 0.94447 1.02170 0.99138 1.23066 1.05297 0.98684 0.96040 1.23071 0.93135 1.01183 1.01401 1.60373 1.40851 1.02880 1.28560 1.21911 1.01643 0.87725 0.93900 1.19172 0.89891 0.98947 0.92103 0.86496 1.29378 0.93809 0.89611 0.92347 1.80960 1.13445 1.12516 1.12330 1.18980 0.96639 0.87834 0.96522 1.21584 1.46307 0.93923 0.95740 0.92917 1.25707 0.95563 0.98039 0.99456 1.70038 1.50264 1.06532 1.29500 0.85647 0.78115 0.78407 0.80428 1.19462 1.21161 1.19674 0.91717 0.92769 0.92146 0.90504 0.92050 0.91415 0.95193 0.91559 0.94996 0.87556 0.90017 0.88742 0.86816 0.87682 0.82863 0.91200 0.91825 0.98327 0.94494 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.65 71.98 0.69 -1.61 16 2 C -0.11 -1.98 5.21 30.59 0.16 -1.82 16 3 C 0.09 1.90 2.43 44.92 0.11 2.01 16 4 H 0.07 1.33 7.84 -2.38 -0.02 1.32 16 5 C 0.07 1.60 5.70 71.98 0.41 2.01 16 6 O -0.38 -10.39 9.53 -148.98 -1.42 -11.81 16 7 C 0.09 2.15 6.22 71.98 0.45 2.59 16 8 C -0.16 -3.60 6.05 -10.79 -0.07 -3.66 16 9 C -0.19 -4.44 10.18 30.62 0.31 -4.13 16 10 C -0.15 -2.58 10.26 30.62 0.31 -2.26 16 11 N -0.69 -17.70 5.94 -491.56 -2.92 -20.61 16 12 C 0.08 2.25 4.82 86.30 0.42 2.66 16 13 C 0.02 0.76 2.40 -12.60 -0.03 0.73 16 14 H 0.12 3.88 8.14 -2.38 -0.02 3.86 16 15 C 0.26 11.45 13.67 89.44 1.22 12.68 16 16 N -0.51 -24.47 18.54 20.01 0.37 -24.10 16 17 C 0.04 1.82 4.42 29.85 0.13 1.95 16 18 C -0.54 -28.84 8.60 25.60 0.22 -28.62 16 19 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 20 C 0.01 0.62 5.46 84.66 0.46 1.08 16 21 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 22 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.85 6.66 -2.38 -0.02 0.83 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.03 0.78 7.40 -2.39 -0.02 0.77 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 0.83 7.88 -2.39 -0.02 0.81 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.35 8.02 6.64 -89.70 -0.60 7.42 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.96 7.37 -2.39 -0.02 1.94 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -66.07 374.52 3.50 -62.57 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.35 Total: 17.43 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.80 Total: -16.40 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.26 Total: -97.69 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.42 Total: -11.81 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.07 3.50 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356619013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.985 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds