Wall clock time and date at job start Tue Mar 31 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 N 1.46497 * 109.46739 * 120.00277 * 2 1 3 5 5 C 1.36942 * 120.00138 * 301.89688 * 4 2 1 6 6 H 1.07991 * 119.99858 * 324.86411 * 5 4 2 7 7 C 1.38814 * 119.99708 * 144.86340 * 5 4 2 8 8 N 1.31617 * 119.99457 * 157.16842 * 7 5 4 9 9 Si 1.86796 * 120.00056 * 337.16548 * 7 5 4 10 10 H 1.48505 * 109.47012 * 95.36032 * 9 7 5 11 11 H 1.48499 * 109.46864 * 215.35500 * 9 7 5 12 12 H 1.48492 * 109.47505 * 335.35843 * 9 7 5 13 13 C 1.46502 * 120.00089 * 121.90289 * 4 2 1 14 14 C 1.52998 * 109.47210 * 89.99428 * 13 4 2 15 15 C 1.53000 * 109.47141 * 180.02562 * 14 13 4 16 16 N 1.46497 * 109.47357 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00381 * 179.72406 * 16 15 14 18 18 O 1.21279 * 119.99741 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00296 * 180.02562 * 17 16 15 20 20 C 1.54642 * 111.03497 * 292.02041 * 19 17 16 21 21 C 1.51099 * 104.72426 * 217.33229 * 20 19 17 22 22 C 1.30521 * 111.10651 * 16.44426 * 21 20 19 23 23 C 1.51104 * 111.10619 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47173 * 305.32533 * 1 2 3 25 25 H 1.09007 * 109.46960 * 65.33021 * 1 2 3 26 26 H 1.09004 * 109.47294 * 185.32709 * 1 2 3 27 27 H 1.09001 * 109.46991 * 239.99745 * 2 1 3 28 28 H 1.08999 * 109.47191 * 175.18660 * 3 2 1 29 29 H 1.08993 * 109.47052 * 295.18817 * 3 2 1 30 30 H 1.09002 * 109.46661 * 55.19105 * 3 2 1 31 31 H 0.97010 * 119.99613 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47025 * 329.99515 * 13 4 2 33 33 H 1.09001 * 109.47546 * 209.99748 * 13 4 2 34 34 H 1.08998 * 109.47065 * 60.00543 * 14 13 4 35 35 H 1.09003 * 109.47488 * 299.99894 * 14 13 4 36 36 H 1.08997 * 109.47547 * 59.99910 * 15 14 13 37 37 H 1.09001 * 109.47411 * 300.00195 * 15 14 13 38 38 H 0.96998 * 119.99975 * 0.02562 * 16 15 14 39 39 H 1.08993 * 110.91866 * 56.02846 * 19 17 16 40 40 H 1.08992 * 110.38620 * 336.15114 * 20 19 17 41 41 H 1.09008 * 110.38305 * 98.52631 * 20 19 17 42 42 H 1.08006 * 124.44351 * 196.45504 * 21 20 19 43 43 H 1.08000 * 124.44918 * 180.02562 * 22 21 20 44 44 H 1.08998 * 110.38990 * 224.76138 * 23 22 21 45 45 H 1.09001 * 110.48200 * 102.42225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.6556 -0.2460 2.4396 6 1 1.5322 0.8116 2.6200 7 6 1.4467 -1.1547 3.4679 8 7 1.5441 -0.7641 4.7210 9 14 1.0271 -2.9316 3.0733 10 1 2.2672 -3.7485 3.0904 11 1 0.0769 -3.4530 4.0884 12 1 0.4039 -3.0060 1.7276 13 6 2.8945 -1.8570 1.0621 14 6 4.3541 -1.3988 1.0431 15 6 5.2693 -2.6169 0.9025 16 7 6.6669 -2.1783 0.8849 17 6 7.6569 -3.0861 0.7736 18 8 7.3906 -4.2662 0.6876 19 6 9.0946 -2.6349 0.7561 20 6 9.4130 -1.8457 -0.5351 21 6 10.8195 -2.2592 -0.9009 22 6 11.1687 -3.3472 -0.2702 23 6 10.0534 -3.8406 0.6220 24 1 -0.3633 0.5942 0.8384 25 1 -0.3633 0.4290 -0.9339 26 1 -0.3634 -1.0233 0.0954 27 1 1.8933 -0.5139 -0.8900 28 1 3.1266 1.4437 0.0862 29 1 1.7488 1.9308 -0.9299 30 1 1.6080 1.9805 0.8438 31 1 1.3977 -1.3990 5.4397 32 1 2.6654 -2.3788 0.1329 33 1 2.7358 -2.5296 1.9051 34 1 4.5833 -0.8772 1.9723 35 1 4.5130 -0.7264 0.2001 36 1 5.0400 -3.1383 -0.0268 37 1 5.1106 -3.2898 1.7453 38 1 6.8801 -1.2348 0.9578 39 1 9.3285 -2.0461 1.6429 40 1 8.7180 -2.1198 -1.3287 41 1 9.3698 -0.7732 -0.3450 42 1 11.4529 -1.7244 -1.5933 43 1 12.1289 -3.8309 -0.3719 44 1 10.4457 -4.1246 1.5985 45 1 9.5400 -4.6838 0.1599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481346576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:06 Heat of formation + Delta-G solvation = -9.618341 kcal Electronic energy + Delta-G solvation = -22166.302145 eV Core-core repulsion = 18991.362426 eV Total energy + Delta-G solvation = -3174.939719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21568 -37.82107 -37.05688 -35.08375 -32.59458 -31.84986 -30.11663 -28.92212 -28.33624 -26.33591 -25.34288 -23.51126 -22.16304 -21.28545 -19.76120 -19.43484 -19.00969 -17.30630 -16.63095 -16.37865 -15.65680 -15.46905 -14.92129 -14.82674 -14.29753 -13.76739 -13.33850 -13.06026 -13.03048 -12.58919 -12.39744 -12.36392 -12.19590 -11.92644 -11.91440 -11.79943 -11.46684 -11.40817 -11.32522 -11.15283 -10.81472 -10.72802 -10.44871 -10.40658 -9.94760 -9.79417 -9.64403 -9.38049 -9.13576 -8.92282 -8.48426 -6.86650 -5.98721 -3.37433 2.00646 2.66990 3.25532 3.32406 3.48791 3.52511 4.26450 4.39055 4.52852 4.74283 4.84662 4.97203 5.04651 5.32074 5.34785 5.41886 5.48689 5.52639 5.56891 5.65814 5.75756 5.77720 5.83366 5.97227 6.01531 6.04500 6.16255 6.23358 6.26311 6.30076 6.32367 6.52533 6.60452 6.62166 6.62667 6.69386 6.75142 6.90212 7.07650 7.13911 7.59682 8.05508 8.28650 8.39153 9.00125 9.73474 10.12801 11.17048 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003781 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.460400 B = 7403.155054 C = 8109.463869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.602 5.602 5 C -0.260 4.260 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.145 4.145 15 C 0.117 3.883 16 N -0.723 5.723 17 C 0.518 3.482 18 O -0.544 6.544 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.171 4.171 22 C -0.161 4.161 23 C -0.089 4.089 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.262 0.738 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.765 -0.496 -11.081 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.324 5.324 5 C -0.388 4.388 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.185 4.185 15 C -0.007 4.007 16 N -0.373 5.373 17 C 0.304 3.696 18 O -0.421 6.421 19 C -0.139 4.139 20 C -0.126 4.126 21 C -0.189 4.189 22 C -0.179 4.179 23 C -0.126 4.126 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.481 -1.376 -10.962 18.214 hybrid contribution -0.102 -0.539 0.064 0.553 sum 14.380 -1.915 -10.898 18.144 Atomic orbital electron populations 1.22124 0.97662 1.01379 0.99956 1.20390 0.92503 0.92224 0.88887 1.22157 1.00656 0.98350 1.00017 1.44247 1.52409 1.33128 1.02594 1.18681 1.42556 0.93150 0.84409 0.90174 1.25393 0.98485 0.97639 0.95053 1.69872 1.50442 1.35415 0.98551 0.87003 0.77821 0.86796 0.77888 1.21422 1.23185 1.19464 1.21072 0.88035 0.90280 0.99065 1.22415 0.97086 0.96262 1.02782 1.21488 0.79202 0.98260 1.01775 1.46113 1.06780 1.10264 1.74185 1.20364 0.87131 0.86129 0.75968 1.90682 1.84500 1.17202 1.49715 1.22188 0.92286 0.99022 1.00410 1.21309 0.95358 1.00088 0.95853 1.23207 0.96594 0.98287 1.00838 1.23325 0.98864 0.97166 0.98537 1.21294 0.93555 0.97837 0.99928 0.92078 0.94488 0.93478 0.93302 0.93476 0.94392 0.92477 0.92807 0.94167 0.92804 0.90530 0.92194 0.91961 0.91661 0.76512 0.87672 0.90233 0.90286 0.85612 0.85641 0.90754 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.04 37.16 0.34 -2.48 16 2 C 0.17 3.15 3.36 -67.93 -0.23 2.92 16 3 C -0.15 -2.63 9.11 37.16 0.34 -2.29 16 4 N -0.60 -13.43 2.06 -165.66 -0.34 -13.77 16 5 C -0.26 -6.86 8.74 -15.06 -0.13 -6.99 16 6 H 0.08 2.30 7.17 -52.49 -0.38 1.92 16 7 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 8 N -0.90 -26.96 13.97 55.49 0.78 -26.18 16 9 Si 0.87 22.06 24.97 -169.99 -4.24 17.82 16 10 H -0.29 -7.08 6.66 56.52 0.38 -6.71 16 11 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 2.92 4.49 -4.04 -0.02 2.90 16 14 C -0.14 -2.50 5.65 -26.73 -0.15 -2.65 16 15 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 16 N -0.72 -9.66 5.56 -60.30 -0.33 -9.99 16 17 C 0.52 7.29 7.06 -10.99 -0.08 7.21 16 18 O -0.54 -9.79 15.51 5.56 0.09 -9.71 16 19 C -0.12 -1.23 3.55 -90.06 -0.32 -1.55 16 20 C -0.09 -0.78 6.37 -26.82 -0.17 -0.95 16 21 C -0.17 -1.42 10.77 -35.70 -0.38 -1.81 16 22 C -0.16 -1.40 10.77 -35.69 -0.38 -1.79 16 23 C -0.09 -0.93 6.18 -26.83 -0.17 -1.09 16 24 H 0.06 1.22 7.80 -51.93 -0.40 0.82 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.84 7.78 -51.93 -0.40 0.44 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.08 7.25 -51.93 -0.38 0.70 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 33 H 0.05 1.25 2.98 -51.93 -0.15 1.09 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 41 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.18 6.95 -51.93 -0.36 0.82 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -31.24 357.20 -8.05 -39.29 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.90 Total: 3.03 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.47 Total: -5.87 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.10 Total: -49.94 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.24 Total: 17.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.24 -8.05 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481346576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.674 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds