Wall clock time and date at job start Tue Mar 31 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 N 1.46497 * 109.46739 * 120.00277 * 2 1 3 5 5 C 1.36942 * 120.00138 * 301.89688 * 4 2 1 6 6 H 1.07991 * 119.99858 * 324.86411 * 5 4 2 7 7 C 1.38814 * 119.99708 * 144.86340 * 5 4 2 8 8 N 1.31617 * 119.99457 * 157.16842 * 7 5 4 9 9 Si 1.86796 * 120.00056 * 337.16548 * 7 5 4 10 10 H 1.48505 * 109.47012 * 95.36032 * 9 7 5 11 11 H 1.48499 * 109.46864 * 215.35500 * 9 7 5 12 12 H 1.48492 * 109.47505 * 335.35843 * 9 7 5 13 13 C 1.46502 * 120.00089 * 121.90289 * 4 2 1 14 14 C 1.52998 * 109.47210 * 89.99428 * 13 4 2 15 15 C 1.53000 * 109.47141 * 180.02562 * 14 13 4 16 16 N 1.46497 * 109.47357 * 180.02562 * 15 14 13 17 17 C 1.34781 * 120.00381 * 179.72406 * 16 15 14 18 18 O 1.21279 * 119.99741 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00296 * 180.02562 * 17 16 15 20 20 C 1.54642 * 111.03497 * 292.02041 * 19 17 16 21 21 C 1.51099 * 104.72426 * 217.33229 * 20 19 17 22 22 C 1.30521 * 111.10651 * 16.44426 * 21 20 19 23 23 C 1.51104 * 111.10619 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47173 * 305.32533 * 1 2 3 25 25 H 1.09007 * 109.46960 * 65.33021 * 1 2 3 26 26 H 1.09004 * 109.47294 * 185.32709 * 1 2 3 27 27 H 1.09001 * 109.46991 * 239.99745 * 2 1 3 28 28 H 1.08999 * 109.47191 * 175.18660 * 3 2 1 29 29 H 1.08993 * 109.47052 * 295.18817 * 3 2 1 30 30 H 1.09002 * 109.46661 * 55.19105 * 3 2 1 31 31 H 0.97010 * 119.99613 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47025 * 329.99515 * 13 4 2 33 33 H 1.09001 * 109.47546 * 209.99748 * 13 4 2 34 34 H 1.08998 * 109.47065 * 60.00543 * 14 13 4 35 35 H 1.09003 * 109.47488 * 299.99894 * 14 13 4 36 36 H 1.08997 * 109.47547 * 59.99910 * 15 14 13 37 37 H 1.09001 * 109.47411 * 300.00195 * 15 14 13 38 38 H 0.96998 * 119.99975 * 0.02562 * 16 15 14 39 39 H 1.08993 * 110.91866 * 56.02846 * 19 17 16 40 40 H 1.08992 * 110.38620 * 336.15114 * 20 19 17 41 41 H 1.09008 * 110.38305 * 98.52631 * 20 19 17 42 42 H 1.08006 * 124.44351 * 196.45504 * 21 20 19 43 43 H 1.08000 * 124.44918 * 180.02562 * 22 21 20 44 44 H 1.08998 * 110.38990 * 224.76138 * 23 22 21 45 45 H 1.09001 * 110.48200 * 102.42225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.6556 -0.2460 2.4396 6 1 1.5322 0.8116 2.6200 7 6 1.4467 -1.1547 3.4679 8 7 1.5441 -0.7641 4.7210 9 14 1.0271 -2.9316 3.0733 10 1 2.2672 -3.7485 3.0904 11 1 0.0769 -3.4530 4.0884 12 1 0.4039 -3.0060 1.7276 13 6 2.8945 -1.8570 1.0621 14 6 4.3541 -1.3988 1.0431 15 6 5.2693 -2.6169 0.9025 16 7 6.6669 -2.1783 0.8849 17 6 7.6569 -3.0861 0.7736 18 8 7.3906 -4.2662 0.6876 19 6 9.0946 -2.6349 0.7561 20 6 9.4130 -1.8457 -0.5351 21 6 10.8195 -2.2592 -0.9009 22 6 11.1687 -3.3472 -0.2702 23 6 10.0534 -3.8406 0.6220 24 1 -0.3633 0.5942 0.8384 25 1 -0.3633 0.4290 -0.9339 26 1 -0.3634 -1.0233 0.0954 27 1 1.8933 -0.5139 -0.8900 28 1 3.1266 1.4437 0.0862 29 1 1.7488 1.9308 -0.9299 30 1 1.6080 1.9805 0.8438 31 1 1.3977 -1.3990 5.4397 32 1 2.6654 -2.3788 0.1329 33 1 2.7358 -2.5296 1.9051 34 1 4.5833 -0.8772 1.9723 35 1 4.5130 -0.7264 0.2001 36 1 5.0400 -3.1383 -0.0268 37 1 5.1106 -3.2898 1.7453 38 1 6.8801 -1.2348 0.9578 39 1 9.3285 -2.0461 1.6429 40 1 8.7180 -2.1198 -1.3287 41 1 9.3698 -0.7732 -0.3450 42 1 11.4529 -1.7244 -1.5933 43 1 12.1289 -3.8309 -0.3719 44 1 10.4457 -4.1246 1.5985 45 1 9.5400 -4.6838 0.1599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481346576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:06 Heat of formation + Delta-G solvation = -29.073588 kcal Electronic energy + Delta-G solvation = -22167.145788 eV Core-core repulsion = 18991.362426 eV Total energy + Delta-G solvation = -3175.783362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25084 -38.94887 -38.47884 -36.40573 -34.31796 -33.55198 -31.37768 -30.14868 -29.08306 -27.77531 -26.99947 -25.15128 -23.28347 -22.66066 -21.16382 -20.80226 -19.67612 -18.42612 -18.29436 -17.39711 -17.18334 -16.83686 -16.38552 -16.27521 -15.51302 -15.25222 -14.81726 -14.76563 -14.10529 -14.01699 -13.81872 -13.60986 -13.40454 -13.34274 -13.03605 -12.90129 -12.74502 -12.61653 -12.57063 -12.35347 -12.25169 -12.11208 -12.06306 -11.98610 -11.69201 -11.40298 -11.19609 -10.91301 -10.55188 -10.14683 -9.79832 -8.74765 -8.15200 -5.47981 1.29484 1.36835 1.40779 1.49404 1.56880 2.15325 2.43817 3.08212 3.34982 3.46821 3.63656 3.89383 4.04646 4.14854 4.25135 4.30136 4.36867 4.40412 4.50425 4.57499 4.59727 4.71107 4.74413 4.77199 4.81563 4.84367 4.93002 4.96874 5.06539 5.09208 5.16214 5.17359 5.20742 5.25467 5.36670 5.45045 5.58664 5.61688 5.65490 5.99863 6.01057 6.26236 6.52733 7.05644 7.20090 7.72398 8.12189 9.04953 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.003781 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.460400 B = 7403.155054 C = 8109.463869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 C -0.144 4.144 4 N -0.612 5.612 5 C -0.229 4.229 6 H 0.050 0.950 7 C -0.021 4.021 8 N -0.951 5.951 9 Si 0.929 3.071 10 H -0.283 1.283 11 H -0.317 1.317 12 H -0.259 1.259 13 C 0.133 3.867 14 C -0.125 4.125 15 C 0.126 3.874 16 N -0.713 5.713 17 C 0.516 3.484 18 O -0.588 6.588 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.170 4.170 23 C -0.094 4.094 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.416 0.584 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.266 0.194 -13.964 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.335 5.335 5 C -0.359 4.359 6 H 0.067 0.933 7 C -0.216 4.216 8 N -0.596 5.596 9 Si 0.760 3.240 10 H -0.211 1.211 11 H -0.247 1.247 12 H -0.183 1.183 13 C 0.007 3.993 14 C -0.165 4.165 15 C 0.001 3.999 16 N -0.365 5.365 17 C 0.304 3.696 18 O -0.469 6.469 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.184 4.184 22 C -0.188 4.188 23 C -0.131 4.131 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.252 0.748 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.999 -0.659 -13.899 21.204 hybrid contribution -0.563 -0.674 0.874 1.239 sum 15.436 -1.333 -13.025 20.242 Atomic orbital electron populations 1.22081 0.97423 1.00316 1.00887 1.20701 0.92799 0.93080 0.88275 1.22048 1.00491 0.97084 1.00671 1.44415 1.53215 1.33605 1.02267 1.18538 1.39652 0.91695 0.86017 0.93276 1.25879 0.99900 1.00904 0.94943 1.69985 1.53653 1.36497 0.99477 0.86093 0.77234 0.83123 0.77503 1.21120 1.24685 1.18275 1.21170 0.89620 0.89410 0.99100 1.22119 0.95181 0.96673 1.02555 1.21212 0.80506 0.97188 1.00976 1.45976 1.05690 1.11125 1.73696 1.21023 0.88540 0.85439 0.74636 1.90665 1.85325 1.19159 1.51705 1.22230 0.89382 0.99540 1.02345 1.21351 0.95573 1.01119 0.94435 1.23429 0.96310 0.98032 1.00616 1.23404 0.99095 0.97670 0.98639 1.21299 0.94164 0.97155 1.00485 0.94639 0.90747 0.94836 0.90288 0.93302 0.90942 0.95179 0.93285 0.91579 0.95571 0.92903 0.89694 0.91343 0.94291 0.74771 0.85715 0.91079 0.87993 0.83373 0.83964 0.90414 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.04 71.98 0.65 -4.50 16 2 C 0.16 5.47 3.36 44.99 0.15 5.62 16 3 C -0.14 -4.57 9.11 71.98 0.66 -3.92 16 4 N -0.61 -26.50 2.06 -678.04 -1.40 -27.90 16 5 C -0.23 -12.25 8.74 84.03 0.73 -11.52 16 6 H 0.05 2.92 7.17 -2.92 -0.02 2.90 16 7 C -0.02 -1.19 5.31 84.86 0.45 -0.74 16 8 N -0.95 -58.94 13.97 21.65 0.30 -58.64 16 9 Si 0.93 46.62 24.97 68.60 1.71 48.33 16 10 H -0.28 -13.89 6.66 99.48 0.66 -13.23 16 11 H -0.32 -16.46 7.11 99.48 0.71 -15.76 16 12 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.13 5.22 4.49 86.38 0.39 5.61 16 14 C -0.13 -4.09 5.65 30.59 0.17 -3.91 16 15 C 0.13 3.87 5.67 86.38 0.49 4.36 16 16 N -0.71 -17.96 5.56 -463.07 -2.57 -20.53 16 17 C 0.52 14.05 7.06 87.65 0.62 14.66 16 18 O -0.59 -21.34 15.51 -3.03 -0.05 -21.39 16 19 C -0.11 -2.17 3.55 -10.43 -0.04 -2.21 16 20 C -0.09 -1.29 6.37 30.53 0.19 -1.10 16 21 C -0.17 -2.25 10.77 26.27 0.28 -1.97 16 22 C -0.17 -2.60 10.77 26.27 0.28 -2.32 16 23 C -0.09 -1.87 6.18 30.53 0.19 -1.68 16 24 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 25 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.08 2.34 7.78 -2.39 -0.02 2.32 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.03 1.10 7.25 -2.39 -0.02 1.08 16 31 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 32 H 0.07 2.26 7.90 -2.38 -0.02 2.24 16 33 H 0.03 1.19 2.98 -2.39 -0.01 1.19 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.42 7.99 8.47 -92.71 -0.79 7.20 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 41 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.74 6.95 -2.39 -0.02 1.73 16 Total: -1.00 -70.28 357.20 3.34 -66.94 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.12 Total: 16.81 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.23 Total: -3.61 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.67 Total: -107.08 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.71 Total: 48.33 kcal Total: -70.28 3.34 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481346576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds