Wall clock time and date at job start Tue Mar 31 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 N 1.46505 * 109.46868 * 119.99703 * 2 1 3 5 5 C 1.36932 * 120.00229 * 302.24255 * 4 2 1 6 6 H 1.08008 * 119.99802 * 321.90483 * 5 4 2 7 7 C 1.38806 * 120.00141 * 141.91081 * 5 4 2 8 8 N 1.31616 * 120.00386 * 338.45489 * 7 5 4 9 9 Si 1.86801 * 120.00007 * 158.45991 * 7 5 4 10 10 H 1.48501 * 109.47054 * 60.00036 * 9 7 5 11 11 H 1.48501 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47119 * 300.00018 * 9 7 5 13 13 C 1.46500 * 119.99879 * 122.23689 * 4 2 1 14 14 C 1.52997 * 109.46989 * 89.99997 * 13 4 2 15 15 C 1.52999 * 109.47329 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99991 * 179.97438 * 16 15 14 18 18 O 1.21280 * 120.00061 * 359.72942 * 17 16 15 19 19 C 1.50700 * 119.99731 * 179.72293 * 17 16 15 20 20 H 1.09000 * 115.55752 * 325.58630 * 19 17 16 21 21 C 1.53000 * 117.49808 * 111.25538 * 19 17 16 22 22 C 1.52992 * 117.49797 * 179.91149 * 19 17 16 23 23 C 1.52999 * 138.58816 * 121.61979 * 22 19 17 24 24 C 1.52998 * 138.58866 * 23.41160 * 22 19 17 25 25 H 1.08997 * 109.46947 * 305.40587 * 1 2 3 26 26 H 1.09003 * 109.46841 * 65.40190 * 1 2 3 27 27 H 1.08990 * 109.47390 * 185.40153 * 1 2 3 28 28 H 1.08996 * 109.47304 * 239.99645 * 2 1 3 29 29 H 1.08999 * 109.46900 * 180.43472 * 3 2 1 30 30 H 1.08996 * 109.46999 * 300.43728 * 3 2 1 31 31 H 1.08996 * 109.47012 * 60.43888 * 3 2 1 32 32 H 0.96998 * 120.00793 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47162 * 330.00540 * 13 4 2 34 34 H 1.08993 * 109.47600 * 210.00320 * 13 4 2 35 35 H 1.09002 * 109.47179 * 60.00011 * 14 13 4 36 36 H 1.09006 * 109.47324 * 299.99972 * 14 13 4 37 37 H 1.09002 * 109.47096 * 59.99819 * 15 14 13 38 38 H 1.09007 * 109.47285 * 300.00313 * 15 14 13 39 39 H 0.96998 * 119.99752 * 359.72690 * 16 15 14 40 40 H 1.09000 * 117.50366 * 214.97604 * 21 19 17 41 41 H 1.09006 * 117.50102 * 0.02562 * 21 19 17 42 42 H 1.09003 * 117.49589 * 336.59772 * 23 22 19 43 43 H 1.09003 * 117.49993 * 121.61984 * 23 22 19 44 44 H 1.08998 * 117.49691 * 238.38244 * 24 22 19 45 45 H 1.09001 * 117.49578 * 23.37337 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6500 -0.2501 2.4394 6 1 1.5674 0.8090 2.6345 7 6 1.3831 -1.1647 3.4489 8 7 1.0658 -2.4055 3.1457 9 14 1.4739 -0.6343 5.2377 10 1 0.5006 0.4609 5.4793 11 1 1.1472 -1.7883 6.1134 12 1 2.8456 -0.1538 5.5425 13 6 2.9005 -1.8525 1.0625 14 6 4.3580 -1.3873 1.0484 15 6 5.2794 -2.6006 0.9080 16 7 6.6750 -2.1552 0.8952 17 6 7.6693 -3.0577 0.7798 18 8 7.4089 -4.2389 0.6916 19 6 9.1046 -2.5989 0.7603 20 1 9.2852 -1.6398 0.2749 21 6 9.9768 -2.9558 1.9656 22 6 10.1874 -3.6718 0.6293 23 6 11.3396 -4.0303 -0.3113 24 6 10.3285 -5.1014 0.1027 25 1 -0.3633 0.5954 0.8376 26 1 -0.3633 0.4278 -0.9344 27 1 -0.3633 -1.0230 0.0967 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0078 30 1 1.6703 1.9586 -0.8860 31 1 1.6832 1.9540 0.8939 32 1 0.8796 -3.0448 3.8511 33 1 2.6765 -2.3735 0.1316 34 1 2.7427 -2.5274 1.9036 35 1 4.5820 -0.8662 1.9792 36 1 4.5159 -0.7124 0.2071 37 1 5.0552 -3.1213 -0.0230 38 1 5.1216 -3.2759 1.7490 39 1 6.8832 -1.2105 0.9661 40 1 10.7314 -2.2318 2.2730 41 1 9.5125 -3.5229 2.7726 42 1 11.2882 -3.6585 -1.3347 43 1 12.3399 -4.0897 0.1178 44 1 10.6634 -5.8653 0.8043 45 1 9.6116 -5.4342 -0.6479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481354768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:12 Heat of formation + Delta-G solvation = 28.389396 kcal Electronic energy + Delta-G solvation = -21873.744670 eV Core-core repulsion = 18700.453090 eV Total energy + Delta-G solvation = -3173.291580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.88658 -37.65147 -36.70721 -34.87700 -32.85067 -32.42666 -31.38730 -28.81186 -26.17991 -25.71860 -24.08058 -22.60688 -22.54147 -20.87431 -20.36782 -19.51503 -19.06902 -16.96868 -16.36407 -15.68205 -15.36406 -15.14837 -15.03685 -14.61435 -14.29423 -13.98541 -13.71603 -13.32002 -12.82363 -12.56317 -12.41558 -11.91801 -11.67352 -11.61416 -11.49314 -11.40911 -11.29712 -10.94620 -10.74198 -10.61899 -10.43720 -10.37257 -10.26335 -10.20117 -10.15039 -9.93636 -9.64457 -9.56444 -9.44594 -8.79260 -8.44698 -6.52702 -5.76133 -3.34185 2.58339 3.14894 3.36886 3.43769 3.44862 3.58607 3.74758 4.13930 4.48878 4.62331 4.68566 5.00659 5.24258 5.28072 5.37605 5.40527 5.42900 5.48115 5.50608 5.68737 5.76332 5.78326 5.86072 5.95864 6.01853 6.06049 6.20128 6.33327 6.42066 6.44925 6.46397 6.70020 6.73473 6.77243 6.82069 6.83797 7.13589 7.21740 7.36218 7.68880 7.72059 7.86086 8.41016 8.56001 9.22697 9.85268 10.44732 11.23942 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.003512 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.265708 B = 7970.850390 C = 8705.157134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.254 4.254 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.153 3.847 14 C -0.145 4.145 15 C 0.121 3.879 16 N -0.722 5.722 17 C 0.535 3.465 18 O -0.539 6.539 19 C -0.141 4.141 20 H 0.122 0.878 21 C -0.101 4.101 22 C -0.202 4.202 23 C -0.131 4.131 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.254 0.746 33 H 0.024 0.976 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.074 1.095 -6.053 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.384 4.384 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.002 4.002 16 N -0.373 5.373 17 C 0.320 3.680 18 O -0.416 6.416 19 C -0.162 4.162 20 H 0.140 0.860 21 C -0.138 4.138 22 C -0.202 4.202 23 C -0.168 4.168 24 C -0.150 4.150 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.764 0.082 -6.014 16.873 hybrid contribution 0.056 0.868 1.045 1.360 sum 15.820 0.950 -4.969 16.609 Atomic orbital electron populations 1.22059 0.97889 1.01573 0.98926 1.20412 0.92455 0.91772 0.89830 1.22180 1.00056 0.99015 1.00017 1.43836 1.51776 1.33266 1.01058 1.18848 1.41647 0.91245 0.86698 0.92382 1.25168 0.98481 0.96422 0.98603 1.69989 1.46824 1.04187 1.31764 0.86545 0.78133 0.77600 0.85519 1.20816 1.21686 1.21007 1.20776 0.84988 0.90818 1.00890 1.22495 0.98721 0.95897 1.01438 1.21474 0.78634 0.98366 1.01748 1.46128 1.06899 1.10129 1.74142 1.19663 0.85899 0.86066 0.76369 1.90688 1.84491 1.16947 1.49456 1.22004 0.89515 0.99614 1.05048 0.85985 1.22670 1.00006 1.01111 0.90048 1.21148 1.00437 0.98444 1.00215 1.22758 0.93474 1.02225 0.98343 1.22587 1.00480 0.89793 1.02141 0.92778 0.95300 0.93005 0.93741 0.93914 0.94606 0.92783 0.93558 0.95744 0.88830 0.91657 0.93289 0.92110 0.91586 0.76736 0.87662 0.88032 0.88613 0.88440 0.88592 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.03 37.16 0.34 -2.61 16 2 C 0.16 3.33 3.36 -67.93 -0.23 3.10 16 3 C -0.15 -2.78 9.20 37.16 0.34 -2.44 16 4 N -0.58 -13.67 2.36 -165.66 -0.39 -14.06 16 5 C -0.25 -6.62 8.23 -15.06 -0.12 -6.75 16 6 H 0.06 1.53 6.95 -52.48 -0.36 1.16 16 7 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 8 N -0.89 -24.93 11.52 55.49 0.64 -24.29 16 9 Si 0.89 21.22 29.61 -169.99 -5.03 16.18 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.15 3.40 5.27 -4.04 -0.02 3.38 16 14 C -0.14 -2.65 5.65 -26.73 -0.15 -2.80 16 15 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 16 N -0.72 -10.33 5.56 -60.29 -0.33 -10.67 16 17 C 0.53 8.07 7.61 -10.99 -0.08 7.98 16 18 O -0.54 -10.19 16.24 5.56 0.09 -10.10 16 19 C -0.14 -1.60 6.19 -91.78 -0.57 -2.17 16 20 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 21 C -0.10 -1.02 10.24 -26.70 -0.27 -1.29 16 22 C -0.20 -2.23 5.06 -154.48 -0.78 -3.01 16 23 C -0.13 -1.14 10.53 -26.73 -0.28 -1.42 16 24 C -0.11 -1.22 10.16 -26.73 -0.27 -1.49 16 25 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.87 7.78 -51.93 -0.40 0.46 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.04 7.06 -51.93 -0.37 0.68 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.09 2.40 5.56 -51.93 -0.29 2.11 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.40 4.66 8.47 -40.82 -0.35 4.31 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -30.16 369.73 -9.73 -39.90 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.06 Total: 4.68 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.22 Total: -7.22 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.09 Total: -49.02 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.16 -9.73 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481354768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.286 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds