Wall clock time and date at job start Tue Mar 31 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 N 1.46505 * 109.46868 * 119.99703 * 2 1 3 5 5 C 1.36932 * 120.00229 * 302.24255 * 4 2 1 6 6 H 1.08008 * 119.99802 * 321.90483 * 5 4 2 7 7 C 1.38806 * 120.00141 * 141.91081 * 5 4 2 8 8 N 1.31616 * 120.00386 * 338.45489 * 7 5 4 9 9 Si 1.86801 * 120.00007 * 158.45991 * 7 5 4 10 10 H 1.48501 * 109.47054 * 60.00036 * 9 7 5 11 11 H 1.48501 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47119 * 300.00018 * 9 7 5 13 13 C 1.46500 * 119.99879 * 122.23689 * 4 2 1 14 14 C 1.52997 * 109.46989 * 89.99997 * 13 4 2 15 15 C 1.52999 * 109.47329 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99991 * 179.97438 * 16 15 14 18 18 O 1.21280 * 120.00061 * 359.72942 * 17 16 15 19 19 C 1.50700 * 119.99731 * 179.72293 * 17 16 15 20 20 H 1.09000 * 115.55752 * 325.58630 * 19 17 16 21 21 C 1.53000 * 117.49808 * 111.25538 * 19 17 16 22 22 C 1.52992 * 117.49797 * 179.91149 * 19 17 16 23 23 C 1.52999 * 138.58816 * 121.61979 * 22 19 17 24 24 C 1.52998 * 138.58866 * 23.41160 * 22 19 17 25 25 H 1.08997 * 109.46947 * 305.40587 * 1 2 3 26 26 H 1.09003 * 109.46841 * 65.40190 * 1 2 3 27 27 H 1.08990 * 109.47390 * 185.40153 * 1 2 3 28 28 H 1.08996 * 109.47304 * 239.99645 * 2 1 3 29 29 H 1.08999 * 109.46900 * 180.43472 * 3 2 1 30 30 H 1.08996 * 109.46999 * 300.43728 * 3 2 1 31 31 H 1.08996 * 109.47012 * 60.43888 * 3 2 1 32 32 H 0.96998 * 120.00793 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47162 * 330.00540 * 13 4 2 34 34 H 1.08993 * 109.47600 * 210.00320 * 13 4 2 35 35 H 1.09002 * 109.47179 * 60.00011 * 14 13 4 36 36 H 1.09006 * 109.47324 * 299.99972 * 14 13 4 37 37 H 1.09002 * 109.47096 * 59.99819 * 15 14 13 38 38 H 1.09007 * 109.47285 * 300.00313 * 15 14 13 39 39 H 0.96998 * 119.99752 * 359.72690 * 16 15 14 40 40 H 1.09000 * 117.50366 * 214.97604 * 21 19 17 41 41 H 1.09006 * 117.50102 * 0.02562 * 21 19 17 42 42 H 1.09003 * 117.49589 * 336.59772 * 23 22 19 43 43 H 1.09003 * 117.49993 * 121.61984 * 23 22 19 44 44 H 1.08998 * 117.49691 * 238.38244 * 24 22 19 45 45 H 1.09001 * 117.49578 * 23.37337 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6500 -0.2501 2.4394 6 1 1.5674 0.8090 2.6345 7 6 1.3831 -1.1647 3.4489 8 7 1.0658 -2.4055 3.1457 9 14 1.4739 -0.6343 5.2377 10 1 0.5006 0.4609 5.4793 11 1 1.1472 -1.7883 6.1134 12 1 2.8456 -0.1538 5.5425 13 6 2.9005 -1.8525 1.0625 14 6 4.3580 -1.3873 1.0484 15 6 5.2794 -2.6006 0.9080 16 7 6.6750 -2.1552 0.8952 17 6 7.6693 -3.0577 0.7798 18 8 7.4089 -4.2389 0.6916 19 6 9.1046 -2.5989 0.7603 20 1 9.2852 -1.6398 0.2749 21 6 9.9768 -2.9558 1.9656 22 6 10.1874 -3.6718 0.6293 23 6 11.3396 -4.0303 -0.3113 24 6 10.3285 -5.1014 0.1027 25 1 -0.3633 0.5954 0.8376 26 1 -0.3633 0.4278 -0.9344 27 1 -0.3633 -1.0230 0.0967 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0078 30 1 1.6703 1.9586 -0.8860 31 1 1.6832 1.9540 0.8939 32 1 0.8796 -3.0448 3.8511 33 1 2.6765 -2.3735 0.1316 34 1 2.7427 -2.5274 1.9036 35 1 4.5820 -0.8662 1.9792 36 1 4.5159 -0.7124 0.2071 37 1 5.0552 -3.1213 -0.0230 38 1 5.1216 -3.2759 1.7490 39 1 6.8832 -1.2105 0.9661 40 1 10.7314 -2.2318 2.2730 41 1 9.5125 -3.5229 2.7726 42 1 11.2882 -3.6585 -1.3347 43 1 12.3399 -4.0897 0.1178 44 1 10.6634 -5.8653 0.8043 45 1 9.6116 -5.4342 -0.6479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481354768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:11 Heat of formation + Delta-G solvation = 11.652117 kcal Electronic energy + Delta-G solvation = -21874.470453 eV Core-core repulsion = 18700.453090 eV Total energy + Delta-G solvation = -3174.017363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01482 -38.73583 -38.30163 -36.28734 -34.28542 -33.72758 -32.95385 -30.51384 -27.73293 -27.37622 -25.58247 -23.96810 -23.28109 -22.39464 -21.46312 -21.27231 -20.04452 -18.21421 -18.03073 -17.02349 -16.86331 -16.55720 -15.97930 -15.89620 -15.75153 -15.52051 -15.02637 -14.83998 -14.51319 -14.07972 -13.52910 -13.32242 -13.25661 -13.15898 -12.83878 -12.73919 -12.62068 -12.50180 -12.36938 -12.34184 -12.15632 -11.91329 -11.70974 -11.32529 -11.25121 -11.18480 -11.09981 -10.94046 -10.74590 -10.45387 -10.10619 -8.47925 -7.76295 -5.38087 1.46137 1.46515 1.49029 1.54406 2.06904 2.53683 2.73612 2.87830 3.29998 3.33475 3.61967 3.78846 3.85066 4.09572 4.16983 4.30471 4.36458 4.49036 4.52107 4.61361 4.64787 4.72918 4.74813 4.76905 4.80321 4.80941 4.96816 4.98208 5.01317 5.02735 5.09857 5.16428 5.21258 5.23372 5.27069 5.44811 5.48867 5.62707 5.68985 5.75878 5.88826 6.54138 6.57542 7.23968 7.25451 7.95027 8.47923 9.19134 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.003512 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.265708 B = 7970.850390 C = 8705.157134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.142 4.142 4 N -0.593 5.593 5 C -0.248 4.248 6 H 0.056 0.944 7 C -0.036 4.036 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.152 3.848 14 C -0.120 4.120 15 C 0.134 3.866 16 N -0.712 5.712 17 C 0.529 3.471 18 O -0.585 6.585 19 C -0.145 4.145 20 H 0.153 0.847 21 C -0.089 4.089 22 C -0.226 4.226 23 C -0.101 4.101 24 C -0.137 4.137 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.247 0.753 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.415 0.585 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.266 3.348 -6.979 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.378 4.378 6 H 0.074 0.926 7 C -0.233 4.233 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.205 1.205 13 C 0.025 3.975 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.364 5.364 17 C 0.317 3.683 18 O -0.465 6.465 19 C -0.165 4.165 20 H 0.171 0.829 21 C -0.126 4.126 22 C -0.227 4.227 23 C -0.137 4.137 24 C -0.174 4.174 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.252 0.748 40 H 0.156 0.844 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.118 0.882 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.975 2.393 -6.953 19.421 hybrid contribution -0.664 0.146 1.247 1.421 sum 17.311 2.538 -5.705 18.403 Atomic orbital electron populations 1.21974 0.97908 0.99656 1.00083 1.20669 0.92526 0.93205 0.89000 1.22025 1.00377 0.96961 1.00680 1.44067 1.52464 1.33459 1.01445 1.19011 1.39965 0.91049 0.87825 0.92637 1.25776 0.99220 0.96567 1.01749 1.70129 1.48820 1.05099 1.32152 0.85673 0.78212 0.76881 0.81693 1.20242 1.22553 1.20477 1.20669 0.87302 0.90250 0.99327 1.22119 0.96168 0.96184 1.01571 1.21114 0.80201 0.97289 1.00467 1.45955 1.05631 1.11070 1.73714 1.20408 0.87527 0.85387 0.75002 1.90670 1.85395 1.18980 1.51476 1.22030 0.86697 1.01023 1.06794 0.82913 1.22766 0.99762 1.01081 0.89014 1.21440 1.01478 0.98323 1.01429 1.22863 0.93471 0.99005 0.98365 1.22605 1.01798 0.90509 1.02463 0.94566 0.91650 0.95864 0.92423 0.93296 0.91540 0.94411 0.94342 0.95687 0.92435 0.92813 0.91260 0.92524 0.94139 0.74844 0.84416 0.89640 0.87602 0.86146 0.88222 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 9.03 71.98 0.65 -4.77 16 2 C 0.15 5.99 3.36 44.99 0.15 6.14 16 3 C -0.14 -4.73 9.20 71.98 0.66 -4.07 16 4 N -0.59 -27.92 2.36 -678.04 -1.60 -29.52 16 5 C -0.25 -12.94 8.23 84.03 0.69 -12.25 16 6 H 0.06 2.91 6.95 -2.91 -0.02 2.89 16 7 C -0.04 -1.96 4.94 84.86 0.42 -1.54 16 8 N -0.92 -53.39 11.52 21.65 0.25 -53.15 16 9 Si 0.95 44.21 29.61 68.60 2.03 46.24 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.15 6.85 5.27 86.38 0.46 7.30 16 14 C -0.12 -4.33 5.65 30.59 0.17 -4.15 16 15 C 0.13 4.57 5.67 86.38 0.49 5.06 16 16 N -0.71 -19.69 5.56 -463.05 -2.57 -22.27 16 17 C 0.53 15.70 7.61 87.66 0.67 16.37 16 18 O -0.58 -22.71 16.24 -3.03 -0.05 -22.76 16 19 C -0.14 -2.98 6.19 -11.54 -0.07 -3.05 16 20 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.09 -1.59 10.24 30.62 0.31 -1.28 16 22 C -0.23 -4.58 5.06 -52.16 -0.26 -4.84 16 23 C -0.10 -1.47 10.53 30.59 0.32 -1.15 16 24 C -0.14 -2.89 10.16 30.59 0.31 -2.58 16 25 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 2.12 7.78 -2.39 -0.02 2.10 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.37 7.06 -2.39 -0.02 1.36 16 32 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.02 1.09 7.90 -2.39 -0.02 1.07 16 34 H 0.06 3.07 5.56 -2.39 -0.01 3.06 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.41 8.79 8.47 -92.71 -0.79 8.00 16 40 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -67.39 369.73 3.20 -64.19 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.17 Total: 22.08 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.97 Total: -4.82 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.92 Total: -104.94 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.39 3.20 -64.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481354768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.844 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds