Wall clock time and date at job start Tue Mar 31 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99941 * 2 1 4 4 H 1.08997 * 109.46994 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46993 * 120.00244 * 3 2 1 6 6 C 1.53001 * 109.46861 * 185.12918 * 5 3 2 7 7 C 1.53007 * 109.46856 * 240.00119 * 3 2 1 8 8 C 1.50702 * 109.46986 * 66.18923 * 7 3 2 9 9 O 1.21277 * 120.00355 * 5.84930 * 8 7 3 10 10 N 1.34780 * 119.99844 * 185.85149 * 8 7 3 11 11 C 1.46507 * 119.99597 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00034 * 179.97438 * 10 8 7 13 13 C 1.53787 * 113.61295 * 217.49645 * 12 10 8 14 14 C 1.53779 * 87.08096 * 220.01971 * 13 12 10 15 15 N 1.46497 * 113.69344 * 139.99289 * 14 13 12 16 16 C 1.36938 * 120.00225 * 107.46060 * 15 14 13 17 17 H 1.08002 * 119.99434 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00443 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99528 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46909 * 119.99875 * 20 18 16 23 23 H 1.48497 * 109.47105 * 239.99617 * 20 18 16 24 24 C 1.53784 * 113.61123 * 120.00331 * 12 10 8 25 25 H 1.08001 * 120.00317 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99720 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99783 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47279 * 305.12630 * 5 3 2 29 29 H 1.08994 * 109.47327 * 65.13163 * 5 3 2 30 30 H 1.08996 * 109.47075 * 294.23849 * 6 5 3 31 31 H 1.08998 * 109.47415 * 54.23967 * 6 5 3 32 32 H 1.08999 * 109.46889 * 174.24092 * 6 5 3 33 33 H 1.08998 * 109.46687 * 186.18542 * 7 3 2 34 34 H 1.09001 * 109.47317 * 306.18397 * 7 3 2 35 35 H 1.09007 * 109.46970 * 90.00405 * 11 10 8 36 36 H 1.08995 * 109.46698 * 209.99824 * 11 10 8 37 37 H 1.08991 * 109.47399 * 330.00044 * 11 10 8 38 38 H 1.08996 * 112.85029 * 348.80578 * 12 10 8 39 39 H 1.09002 * 113.61459 * 334.56586 * 13 12 10 40 40 H 1.08996 * 113.60956 * 105.47113 * 13 12 10 41 41 H 1.08993 * 113.61563 * 270.88696 * 14 13 12 42 42 H 0.97003 * 119.99865 * 287.47121 * 15 14 13 43 43 H 0.96992 * 119.99907 * 179.97438 * 19 18 16 44 44 H 1.09005 * 113.60842 * 254.52372 * 24 12 10 45 45 H 1.08998 * 113.61980 * 25.42758 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3861 1.2492 6 6 3.6095 2.7618 1.3153 7 6 2.9431 1.3861 -1.2493 8 6 2.0693 1.4594 -2.4750 9 8 0.8661 1.5550 -2.3571 10 7 2.6250 1.4187 -3.7022 11 6 4.0786 1.3037 -3.8445 12 6 1.7756 1.4894 -4.8937 13 6 2.2571 0.5939 -6.0475 14 6 1.8768 1.7441 -6.9946 15 7 2.8347 1.9513 -8.0834 16 6 2.5050 1.5922 -9.3631 17 1 1.5385 1.1565 -9.5696 18 6 3.4129 1.7880 -10.3947 19 7 4.5905 2.3194 -10.1431 20 14 2.9627 1.2987 -12.1404 21 1 1.5917 0.7287 -12.1567 22 1 3.0124 2.4954 -13.0183 23 1 3.9267 0.2825 -12.6338 24 6 2.0864 2.6913 -5.8013 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 2.3283 1.2372 2.1368 29 1 3.7099 0.6128 1.2044 30 1 4.3027 2.8701 0.4812 31 1 2.8467 3.5382 1.2569 32 1 4.1537 2.8570 2.2549 33 1 3.5691 2.2767 -1.1957 34 1 3.5756 0.5003 -1.3064 35 1 4.3578 0.2506 -3.8827 36 1 4.3937 1.7966 -4.7642 37 1 4.5658 1.7781 -2.9927 38 1 0.7158 1.3773 -4.6652 39 1 3.3267 0.3854 -6.0213 40 1 1.6532 -0.3030 -6.1853 41 1 0.8445 1.7009 -7.3416 42 1 3.7026 2.3428 -7.8979 43 1 5.2249 2.4558 -10.8639 44 1 1.3445 3.4876 -5.7404 45 1 3.1092 3.0562 -5.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486473797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:23 Heat of formation + Delta-G solvation = 4.682085 kcal Electronic energy + Delta-G solvation = -22136.906486 eV Core-core repulsion = 18962.586880 eV Total energy + Delta-G solvation = -3174.319606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21508 -38.35572 -36.59687 -34.72066 -33.11271 -32.37132 -30.27029 -29.46584 -26.91702 -25.71143 -25.09398 -24.23183 -22.36394 -21.16285 -19.89004 -19.22745 -18.71179 -17.09621 -16.99094 -16.32352 -15.77077 -15.10572 -14.73118 -14.54553 -14.31885 -14.06250 -13.54514 -13.26455 -13.16499 -13.00594 -12.70148 -12.51923 -12.19080 -12.06417 -11.89572 -11.82175 -11.75854 -11.27783 -11.22987 -10.91632 -10.85438 -10.63721 -10.55561 -10.44525 -10.23112 -9.97657 -9.71137 -9.53694 -9.19380 -8.91093 -8.35489 -6.99775 -5.81649 -3.10328 2.34788 2.77953 3.16307 3.41022 3.47338 3.49194 4.49064 4.57169 4.58505 4.64740 4.95128 5.04861 5.12650 5.16945 5.20154 5.25317 5.26122 5.33109 5.40606 5.45103 5.46122 5.57937 5.65892 5.69149 5.76851 5.80231 5.86611 5.92035 5.96423 5.98601 6.14521 6.18359 6.29763 6.34966 6.49587 6.57422 6.65269 6.84046 6.85294 7.05561 7.61348 7.68160 8.34397 8.37087 9.48401 10.05192 10.39931 11.40880 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037420 B = 0.003028 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.080057 B = 9245.133468 C = 9654.528888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.157 4.157 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.156 4.156 7 C -0.135 4.135 8 C 0.510 3.490 9 O -0.540 6.540 10 N -0.602 5.602 11 C 0.076 3.924 12 C 0.117 3.883 13 C -0.174 4.174 14 C 0.169 3.831 15 N -0.710 5.710 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.163 4.163 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -2.163 22.566 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.063 4.063 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.213 4.213 7 C -0.174 4.174 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.334 5.334 11 C -0.068 4.068 12 C 0.014 3.986 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.203 4.203 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.818 -2.156 22.418 22.595 hybrid contribution 0.347 -0.243 -1.053 1.135 sum -1.471 -2.399 21.365 21.550 Atomic orbital electron populations 1.23742 0.95968 1.01415 0.99077 1.22698 0.96032 0.97272 1.01521 1.20163 0.96496 0.96889 0.92775 0.89942 1.21537 0.98772 0.97629 0.97390 1.21850 1.00726 0.97133 1.01612 1.21802 0.98762 1.04085 0.92800 1.20657 0.88954 0.76084 0.84491 1.90662 1.15097 1.49586 1.86386 1.47901 1.07345 1.72280 1.05864 1.21768 0.80011 1.01742 1.03244 1.22551 0.95581 0.98256 0.82210 1.24305 1.01674 0.99458 0.96191 1.21346 0.94626 0.92004 0.86391 1.42364 1.15788 1.73461 1.03194 1.19363 0.99746 1.33757 0.84504 0.90958 1.24761 0.96352 1.01634 0.98165 1.69663 1.07058 1.49824 1.31570 0.86112 0.77522 0.77665 0.84873 1.20489 1.21831 1.21851 1.23918 1.01805 0.97359 0.97209 0.88499 0.89181 0.88082 0.91678 0.91846 0.92510 0.92583 0.92738 0.88670 0.89224 0.92613 0.90143 0.91439 0.86996 0.89946 0.92280 0.90335 0.78138 0.93508 0.91877 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 13.42 29.01 0.39 -1.45 16 2 C -0.16 -1.65 7.90 -36.03 -0.28 -1.93 16 3 C -0.04 -0.43 1.80 -91.77 -0.17 -0.59 16 4 H 0.08 0.93 7.47 -51.93 -0.39 0.54 16 5 C -0.12 -0.86 5.38 -26.73 -0.14 -1.00 16 6 C -0.16 -1.05 9.53 37.16 0.35 -0.70 16 7 C -0.13 -1.31 3.51 -27.88 -0.10 -1.41 16 8 C 0.51 6.99 7.37 -10.98 -0.08 6.91 16 9 O -0.54 -9.07 13.95 5.56 0.08 -9.00 16 10 N -0.60 -8.25 3.08 -173.00 -0.53 -8.78 16 11 C 0.08 0.84 8.74 59.85 0.52 1.36 16 12 C 0.12 1.85 4.21 -67.11 -0.28 1.57 16 13 C -0.17 -3.01 7.31 -25.92 -0.19 -3.20 16 14 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 15 N -0.71 -17.51 5.40 -52.64 -0.28 -17.79 16 16 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 C -0.16 -2.75 7.37 -25.91 -0.19 -2.94 16 25 H 0.10 1.14 7.83 -52.49 -0.41 0.73 16 26 H 0.09 0.90 8.06 -52.48 -0.42 0.48 16 27 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 6.72 -51.93 -0.35 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.78 5.98 -51.93 -0.31 0.47 16 34 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 37 H 0.07 0.57 6.60 -51.93 -0.34 0.22 16 38 H 0.11 1.87 7.23 -51.93 -0.38 1.50 16 39 H 0.08 1.45 6.72 -51.93 -0.35 1.10 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 42 H 0.38 9.97 7.92 -40.82 -0.32 9.65 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.36 6.90 -51.93 -0.36 1.00 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.15 357.85 -8.08 -39.23 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.72 Total: 8.42 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.72 Total: -7.62 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.09 Total: -53.60 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.15 -8.08 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486473797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.911 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds