Wall clock time and date at job start Tue Mar 31 2020 01:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99941 * 2 1 4 4 H 1.08997 * 109.46994 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46993 * 120.00244 * 3 2 1 6 6 C 1.53001 * 109.46861 * 185.12918 * 5 3 2 7 7 C 1.53007 * 109.46856 * 240.00119 * 3 2 1 8 8 C 1.50702 * 109.46986 * 66.18923 * 7 3 2 9 9 O 1.21277 * 120.00355 * 5.84930 * 8 7 3 10 10 N 1.34780 * 119.99844 * 185.85149 * 8 7 3 11 11 C 1.46507 * 119.99597 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00034 * 179.97438 * 10 8 7 13 13 C 1.53787 * 113.61295 * 217.49645 * 12 10 8 14 14 C 1.53779 * 87.08096 * 220.01971 * 13 12 10 15 15 N 1.46497 * 113.69344 * 139.99289 * 14 13 12 16 16 C 1.36938 * 120.00225 * 107.46060 * 15 14 13 17 17 H 1.08002 * 119.99434 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00443 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99528 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46909 * 119.99875 * 20 18 16 23 23 H 1.48497 * 109.47105 * 239.99617 * 20 18 16 24 24 C 1.53784 * 113.61123 * 120.00331 * 12 10 8 25 25 H 1.08001 * 120.00317 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99720 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99783 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47279 * 305.12630 * 5 3 2 29 29 H 1.08994 * 109.47327 * 65.13163 * 5 3 2 30 30 H 1.08996 * 109.47075 * 294.23849 * 6 5 3 31 31 H 1.08998 * 109.47415 * 54.23967 * 6 5 3 32 32 H 1.08999 * 109.46889 * 174.24092 * 6 5 3 33 33 H 1.08998 * 109.46687 * 186.18542 * 7 3 2 34 34 H 1.09001 * 109.47317 * 306.18397 * 7 3 2 35 35 H 1.09007 * 109.46970 * 90.00405 * 11 10 8 36 36 H 1.08995 * 109.46698 * 209.99824 * 11 10 8 37 37 H 1.08991 * 109.47399 * 330.00044 * 11 10 8 38 38 H 1.08996 * 112.85029 * 348.80578 * 12 10 8 39 39 H 1.09002 * 113.61459 * 334.56586 * 13 12 10 40 40 H 1.08996 * 113.60956 * 105.47113 * 13 12 10 41 41 H 1.08993 * 113.61563 * 270.88696 * 14 13 12 42 42 H 0.97003 * 119.99865 * 287.47121 * 15 14 13 43 43 H 0.96992 * 119.99907 * 179.97438 * 19 18 16 44 44 H 1.09005 * 113.60842 * 254.52372 * 24 12 10 45 45 H 1.08998 * 113.61980 * 25.42758 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3861 1.2492 6 6 3.6095 2.7618 1.3153 7 6 2.9431 1.3861 -1.2493 8 6 2.0693 1.4594 -2.4750 9 8 0.8661 1.5550 -2.3571 10 7 2.6250 1.4187 -3.7022 11 6 4.0786 1.3037 -3.8445 12 6 1.7756 1.4894 -4.8937 13 6 2.2571 0.5939 -6.0475 14 6 1.8768 1.7441 -6.9946 15 7 2.8347 1.9513 -8.0834 16 6 2.5050 1.5922 -9.3631 17 1 1.5385 1.1565 -9.5696 18 6 3.4129 1.7880 -10.3947 19 7 4.5905 2.3194 -10.1431 20 14 2.9627 1.2987 -12.1404 21 1 1.5917 0.7287 -12.1567 22 1 3.0124 2.4954 -13.0183 23 1 3.9267 0.2825 -12.6338 24 6 2.0864 2.6913 -5.8013 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 2.3283 1.2372 2.1368 29 1 3.7099 0.6128 1.2044 30 1 4.3027 2.8701 0.4812 31 1 2.8467 3.5382 1.2569 32 1 4.1537 2.8570 2.2549 33 1 3.5691 2.2767 -1.1957 34 1 3.5756 0.5003 -1.3064 35 1 4.3578 0.2506 -3.8827 36 1 4.3937 1.7966 -4.7642 37 1 4.5658 1.7781 -2.9927 38 1 0.7158 1.3773 -4.6652 39 1 3.3267 0.3854 -6.0213 40 1 1.6532 -0.3030 -6.1853 41 1 0.8445 1.7009 -7.3416 42 1 3.7026 2.3428 -7.8979 43 1 5.2249 2.4558 -10.8639 44 1 1.3445 3.4876 -5.7404 45 1 3.1092 3.0562 -5.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486473797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:23 Heat of formation + Delta-G solvation = -13.244612 kcal Electronic energy + Delta-G solvation = -22137.683846 eV Core-core repulsion = 18962.586880 eV Total energy + Delta-G solvation = -3175.096966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36085 -39.62006 -37.49020 -36.12486 -34.85138 -33.08475 -32.02861 -30.45830 -27.93863 -26.78389 -26.45339 -25.87459 -23.76407 -21.93042 -20.91882 -20.44330 -19.90125 -19.04224 -18.11243 -17.48453 -16.73664 -16.49939 -16.08293 -15.83093 -15.44978 -15.00914 -14.86143 -14.66606 -14.23888 -14.07087 -13.78277 -13.51062 -13.28146 -13.15923 -13.13795 -13.06149 -12.82129 -12.75966 -12.44477 -12.20531 -12.12605 -11.96138 -11.90059 -11.68677 -11.53850 -11.41965 -11.29877 -10.89477 -10.68731 -10.06443 -9.51201 -8.99514 -7.95645 -5.23799 1.47928 1.48335 1.51528 1.58310 1.73319 2.09858 2.56626 3.36262 3.59010 3.79050 3.82262 3.84724 3.92184 3.96824 4.19315 4.28140 4.30569 4.36901 4.42616 4.49866 4.56718 4.65856 4.68734 4.75733 4.77924 4.84412 4.87960 4.99465 4.99535 5.06161 5.10240 5.13578 5.17359 5.24774 5.37935 5.44793 5.52550 5.54153 5.69882 5.82333 6.04375 6.26769 6.54563 7.28099 7.33436 8.07962 8.32468 9.27653 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037420 B = 0.003028 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.080057 B = 9245.133468 C = 9654.528888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C -0.043 4.043 4 H 0.060 0.940 5 C -0.109 4.109 6 C -0.157 4.157 7 C -0.127 4.127 8 C 0.503 3.497 9 O -0.576 6.576 10 N -0.604 5.604 11 C 0.071 3.929 12 C 0.133 3.867 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.722 5.722 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.150 4.150 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.065 0.935 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 -2.837 23.854 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.173 4.173 3 C -0.062 4.062 4 H 0.078 0.922 5 C -0.146 4.146 6 C -0.214 4.214 7 C -0.166 4.166 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.336 5.336 11 C -0.071 4.071 12 C 0.028 3.972 13 C -0.202 4.202 14 C 0.041 3.959 15 N -0.360 5.360 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.221 1.221 23 H -0.220 1.220 24 C -0.190 4.190 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.019 -2.845 23.750 23.942 hybrid contribution 0.038 -0.030 -1.377 1.378 sum -0.981 -2.875 22.373 22.578 Atomic orbital electron populations 1.23776 0.96585 1.01142 1.00605 1.22954 0.95933 0.98299 1.00142 1.20155 0.96467 0.95602 0.94014 0.92177 1.21487 0.98654 0.98538 0.95955 1.21861 1.00630 0.96370 1.02516 1.21852 0.98304 1.06141 0.90310 1.21410 0.88991 0.74949 0.85289 1.90657 1.16947 1.51117 1.86888 1.47962 1.08273 1.72122 1.05201 1.21967 0.78344 1.02733 1.04070 1.22154 0.95533 0.96588 0.82894 1.24066 1.01603 0.98702 0.95794 1.21626 0.93538 0.94508 0.86191 1.42490 1.16239 1.73753 1.03542 1.19715 0.99583 1.32441 0.85817 0.90691 1.25523 0.96554 1.02642 1.01857 1.69801 1.08034 1.51640 1.32333 0.85115 0.77620 0.76973 0.80309 1.19219 1.22113 1.22002 1.23759 1.01989 0.97419 0.95798 0.89985 0.88462 0.86643 0.91780 0.90355 0.91760 0.93477 0.91735 0.86528 0.86873 0.91536 0.91587 0.88102 0.87921 0.90054 0.92127 0.90731 0.79202 0.93975 0.91615 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 13.42 67.78 0.91 -3.16 16 2 C -0.16 -3.03 7.90 25.65 0.20 -2.83 16 3 C -0.04 -0.76 1.80 -11.54 -0.02 -0.78 16 4 H 0.06 1.33 7.47 -2.39 -0.02 1.31 16 5 C -0.11 -1.32 5.38 30.59 0.16 -1.15 16 6 C -0.16 -1.70 9.53 71.98 0.69 -1.01 16 7 C -0.13 -2.07 3.51 29.85 0.10 -1.97 16 8 C 0.50 12.89 7.37 87.66 0.65 13.54 16 9 O -0.58 -19.07 13.95 -3.02 -0.04 -19.12 16 10 N -0.60 -15.39 3.08 -819.63 -2.53 -17.91 16 11 C 0.07 1.38 8.74 127.77 1.12 2.49 16 12 C 0.13 4.06 4.21 45.52 0.19 4.26 16 13 C -0.16 -5.40 7.31 31.12 0.23 -5.17 16 14 C 0.15 5.97 4.48 45.52 0.20 6.17 16 15 N -0.72 -35.83 5.40 -320.45 -1.73 -37.56 16 16 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -58.20 13.06 21.65 0.28 -57.91 16 20 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 C -0.15 -4.96 7.37 31.12 0.23 -4.73 16 25 H 0.08 2.02 7.83 -2.91 -0.02 2.00 16 26 H 0.10 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.60 6.72 -2.39 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 1.45 5.98 -2.39 -0.01 1.44 16 34 H 0.11 1.38 7.94 -2.39 -0.02 1.36 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.51 6.34 -2.39 -0.02 1.49 16 37 H 0.10 1.28 6.60 -2.39 -0.02 1.27 16 38 H 0.10 3.39 7.23 -2.39 -0.02 3.37 16 39 H 0.08 2.78 6.72 -2.39 -0.02 2.77 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.96 8.10 -2.39 -0.02 2.94 16 42 H 0.38 19.73 7.92 -92.71 -0.73 18.99 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.08 2.71 6.90 -2.39 -0.02 2.69 16 Total: -1.00 -67.21 357.85 4.19 -63.02 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.22 Total: 32.28 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 5.97 Total: -10.62 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.98 Total: -113.38 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.04 Total: -19.12 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -67.21 4.19 -63.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486473797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.776 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds