Wall clock time and date at job start Tue Mar 31 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50696 * 120.00009 * 2 1 4 4 H 1.09003 * 109.47128 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47140 * 239.99865 * 3 2 1 6 6 C 1.53001 * 109.46855 * 65.00023 * 5 3 2 7 7 C 1.52998 * 109.47326 * 119.99738 * 3 2 1 8 8 C 1.50701 * 109.47181 * 295.00405 * 7 3 2 9 9 O 1.21280 * 119.99898 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99771 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.46503 * 120.00031 * 179.97438 * 10 8 7 13 13 C 1.53770 * 113.61743 * 196.48327 * 12 10 8 14 14 C 1.53786 * 87.08251 * 89.11298 * 13 12 10 15 15 N 1.46500 * 113.69014 * 139.99049 * 14 13 12 16 16 C 1.36941 * 119.99813 * 107.46731 * 15 14 13 17 17 H 1.08000 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99692 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00455 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46781 * 60.00153 * 20 18 16 22 22 H 1.48498 * 109.46980 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47137 * 300.00172 * 20 18 16 24 24 C 1.53781 * 113.61309 * 293.98512 * 12 10 8 25 25 H 1.07996 * 119.99764 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99856 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99856 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47238 * 184.99777 * 5 3 2 29 29 H 1.08997 * 109.47494 * 305.00205 * 5 3 2 30 30 H 1.09000 * 109.47599 * 299.99635 * 6 5 3 31 31 H 1.08997 * 109.47283 * 60.00519 * 6 5 3 32 32 H 1.09010 * 109.46966 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47201 * 174.99667 * 7 3 2 34 34 H 1.09003 * 109.46710 * 55.00226 * 7 3 2 35 35 H 1.08999 * 109.47310 * 264.66324 * 11 10 8 36 36 H 1.09005 * 109.46814 * 24.65924 * 11 10 8 37 37 H 1.08998 * 109.47256 * 144.66005 * 11 10 8 38 38 H 1.09001 * 112.90669 * 65.22998 * 12 10 8 39 39 H 1.08995 * 113.61839 * 203.66598 * 13 12 10 40 40 H 1.09002 * 113.61412 * 334.56910 * 13 12 10 41 41 H 1.08990 * 113.61464 * 270.88430 * 14 13 12 42 42 H 0.96996 * 119.99841 * 287.47247 * 15 14 13 43 43 H 0.97000 * 120.00567 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61584 * 25.42789 * 24 12 10 45 45 H 1.08994 * 113.61752 * 156.33687 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0565 1.4306 -2.4953 7 6 2.9432 1.3862 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3999 2.3632 10 7 2.6302 1.5038 3.7001 11 6 4.0883 1.5408 3.8370 12 6 1.7811 1.5470 4.8933 13 6 2.5166 2.0267 6.1556 14 6 2.1139 3.4550 5.7521 15 7 1.7089 4.2940 6.8828 16 6 2.5322 5.2969 7.3205 17 1 3.4801 5.4691 6.8325 18 6 2.1487 6.0915 8.3921 19 7 0.9942 5.8807 8.9878 20 14 3.2720 7.4592 8.9897 21 1 3.5010 8.4285 7.8881 22 1 2.6368 8.1557 10.1371 23 1 4.5710 6.8812 9.4184 24 6 0.9310 2.8241 4.9985 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 3.5540 2.2877 -1.2056 29 1 3.5907 0.5105 -1.2952 30 1 1.4456 0.5290 -2.5390 31 1 1.4091 2.3063 -2.4494 32 1 2.6832 1.4879 -3.3853 33 1 3.5541 2.2878 1.2055 34 1 3.5906 0.5105 1.2951 35 1 4.4619 0.5330 4.0180 36 1 4.5294 1.9327 2.9205 37 1 4.3584 2.1842 4.6743 38 1 1.2113 0.6297 5.0419 39 1 2.0562 1.6890 7.0841 40 1 3.5921 1.8519 6.1273 41 1 2.8365 3.9444 5.0993 42 1 0.8578 4.1390 7.3213 43 1 0.7260 6.4362 9.7364 44 1 0.7266 3.2931 4.0360 45 1 0.0372 2.7045 5.6106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486473798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:26 Heat of formation + Delta-G solvation = 12.442445 kcal Electronic energy + Delta-G solvation = -22331.896342 eV Core-core repulsion = 19157.913251 eV Total energy + Delta-G solvation = -3173.983092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31000 -38.28309 -36.52236 -34.63600 -33.06787 -31.84565 -30.54233 -29.71658 -27.18817 -25.46292 -24.72731 -23.98493 -22.16609 -21.73237 -20.11511 -19.46770 -18.17177 -17.07719 -16.67875 -16.23127 -15.79276 -15.23492 -14.77598 -14.65733 -14.15704 -13.96744 -13.75336 -13.35514 -13.18004 -12.82733 -12.65694 -12.46986 -12.23923 -12.02838 -11.66431 -11.63379 -11.49737 -11.34214 -11.30547 -10.93009 -10.85245 -10.75099 -10.59572 -10.33128 -10.16697 -9.83704 -9.67763 -9.51525 -9.07202 -8.88325 -8.34466 -6.97342 -5.78645 -3.07747 2.42585 2.84368 3.12827 3.42235 3.46601 3.47925 4.46798 4.58116 4.62278 4.70901 4.94680 5.07048 5.12818 5.15331 5.23397 5.25736 5.32380 5.36217 5.46819 5.49283 5.51619 5.59200 5.68762 5.73845 5.75336 5.78997 5.90438 5.94779 5.98567 6.05571 6.16463 6.19591 6.33811 6.42335 6.61107 6.64675 6.71432 6.80064 6.92217 7.15237 7.58446 7.66980 8.39748 8.40420 9.50671 10.09115 10.43773 11.43677 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.003288 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.774018 B = 8513.117244 C = 8725.994425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.528 6.528 10 N -0.598 5.598 11 C 0.070 3.930 12 C 0.122 3.878 13 C -0.174 4.174 14 C 0.169 3.831 15 N -0.712 5.712 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.151 4.151 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.064 0.936 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -12.618 -18.870 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.064 4.064 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.332 5.332 11 C -0.073 4.073 12 C 0.018 3.982 13 C -0.215 4.215 14 C 0.057 3.943 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.191 4.191 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.341 -12.454 -18.853 23.218 hybrid contribution 0.445 0.595 0.722 1.036 sum 5.786 -11.859 -18.132 22.425 Atomic orbital electron populations 1.23693 0.95937 1.01277 0.99081 1.22597 0.95962 0.96965 1.01443 1.20166 0.96623 0.97113 0.92484 0.90024 1.21536 0.97857 1.01864 0.94073 1.21760 0.99832 1.02169 0.97075 1.21748 0.98726 1.03925 0.92860 1.20573 0.89077 0.76448 0.84099 1.90698 1.14678 1.48859 1.86170 1.47633 1.06658 1.73251 1.05706 1.21896 0.80069 1.01951 1.03432 1.21758 0.93299 0.98124 0.85012 1.24278 0.99763 1.01646 0.95804 1.21574 0.94401 0.88689 0.89655 1.42422 1.22216 1.36152 1.34218 1.19245 0.99631 1.07582 1.11179 0.91230 1.24767 0.97279 0.99919 0.98874 1.69649 1.21273 1.41932 1.25140 0.86269 0.79803 0.82019 0.78093 1.21237 1.21661 1.21231 1.23706 0.98832 0.95680 1.00927 0.89364 0.88570 0.88301 0.91820 0.91955 0.92443 0.92753 0.93009 0.88912 0.89200 0.92826 0.91141 0.89920 0.90797 0.89247 0.91702 0.90995 0.78035 0.93371 0.91711 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 13.22 29.01 0.38 -1.48 16 2 C -0.15 -1.61 6.76 -36.03 -0.24 -1.85 16 3 C -0.05 -0.45 1.81 -91.78 -0.17 -0.61 16 4 H 0.08 0.97 7.60 -51.93 -0.39 0.57 16 5 C -0.12 -0.89 5.39 -26.73 -0.14 -1.03 16 6 C -0.15 -1.15 9.73 37.16 0.36 -0.79 16 7 C -0.13 -1.30 3.64 -27.88 -0.10 -1.40 16 8 C 0.51 7.10 7.14 -10.98 -0.08 7.02 16 9 O -0.53 -9.07 13.36 5.56 0.07 -9.00 16 10 N -0.60 -8.16 3.01 -173.01 -0.52 -8.68 16 11 C 0.07 0.72 9.74 59.85 0.58 1.30 16 12 C 0.12 1.94 4.09 -67.12 -0.27 1.66 16 13 C -0.17 -2.93 7.00 -25.92 -0.18 -3.12 16 14 C 0.17 3.40 4.25 -67.11 -0.29 3.12 16 15 N -0.71 -18.06 5.40 -52.64 -0.28 -18.34 16 16 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.15 -2.80 7.18 -25.92 -0.19 -2.99 16 25 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 26 H 0.10 1.19 7.83 -52.49 -0.41 0.78 16 27 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 6.25 -51.93 -0.32 0.24 16 37 H 0.08 0.94 5.63 -51.93 -0.29 0.64 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.06 0.99 5.81 -51.93 -0.30 0.69 16 41 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 42 H 0.39 10.42 7.92 -40.82 -0.32 10.09 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.06 1.26 7.41 -51.93 -0.38 0.88 16 45 H 0.08 1.60 8.12 -51.93 -0.42 1.17 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.77 357.85 -8.03 -39.80 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.81 Total: 8.69 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.58 Total: -7.58 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.08 Total: -54.56 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.77 -8.03 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486473798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.241 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds