Wall clock time and date at job start Tue Mar 31 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50696 * 120.00009 * 2 1 4 4 H 1.09003 * 109.47128 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47140 * 239.99865 * 3 2 1 6 6 C 1.53001 * 109.46855 * 65.00023 * 5 3 2 7 7 C 1.52998 * 109.47326 * 119.99738 * 3 2 1 8 8 C 1.50701 * 109.47181 * 295.00405 * 7 3 2 9 9 O 1.21280 * 119.99898 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99771 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00357 * 359.97438 * 10 8 7 12 12 C 1.46503 * 120.00031 * 179.97438 * 10 8 7 13 13 C 1.53770 * 113.61743 * 196.48327 * 12 10 8 14 14 C 1.53786 * 87.08251 * 89.11298 * 13 12 10 15 15 N 1.46500 * 113.69014 * 139.99049 * 14 13 12 16 16 C 1.36941 * 119.99813 * 107.46731 * 15 14 13 17 17 H 1.08000 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99692 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00455 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46781 * 60.00153 * 20 18 16 22 22 H 1.48498 * 109.46980 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47137 * 300.00172 * 20 18 16 24 24 C 1.53781 * 113.61309 * 293.98512 * 12 10 8 25 25 H 1.07996 * 119.99764 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99856 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99856 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47238 * 184.99777 * 5 3 2 29 29 H 1.08997 * 109.47494 * 305.00205 * 5 3 2 30 30 H 1.09000 * 109.47599 * 299.99635 * 6 5 3 31 31 H 1.08997 * 109.47283 * 60.00519 * 6 5 3 32 32 H 1.09010 * 109.46966 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47201 * 174.99667 * 7 3 2 34 34 H 1.09003 * 109.46710 * 55.00226 * 7 3 2 35 35 H 1.08999 * 109.47310 * 264.66324 * 11 10 8 36 36 H 1.09005 * 109.46814 * 24.65924 * 11 10 8 37 37 H 1.08998 * 109.47256 * 144.66005 * 11 10 8 38 38 H 1.09001 * 112.90669 * 65.22998 * 12 10 8 39 39 H 1.08995 * 113.61839 * 203.66598 * 13 12 10 40 40 H 1.09002 * 113.61412 * 334.56910 * 13 12 10 41 41 H 1.08990 * 113.61464 * 270.88430 * 14 13 12 42 42 H 0.96996 * 119.99841 * 287.47247 * 15 14 13 43 43 H 0.97000 * 120.00567 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61584 * 25.42789 * 24 12 10 45 45 H 1.08994 * 113.61752 * 156.33687 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0565 1.4306 -2.4953 7 6 2.9432 1.3862 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3999 2.3632 10 7 2.6302 1.5038 3.7001 11 6 4.0883 1.5408 3.8370 12 6 1.7811 1.5470 4.8933 13 6 2.5166 2.0267 6.1556 14 6 2.1139 3.4550 5.7521 15 7 1.7089 4.2940 6.8828 16 6 2.5322 5.2969 7.3205 17 1 3.4801 5.4691 6.8325 18 6 2.1487 6.0915 8.3921 19 7 0.9942 5.8807 8.9878 20 14 3.2720 7.4592 8.9897 21 1 3.5010 8.4285 7.8881 22 1 2.6368 8.1557 10.1371 23 1 4.5710 6.8812 9.4184 24 6 0.9310 2.8241 4.9985 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 3.5540 2.2877 -1.2056 29 1 3.5907 0.5105 -1.2952 30 1 1.4456 0.5290 -2.5390 31 1 1.4091 2.3063 -2.4494 32 1 2.6832 1.4879 -3.3853 33 1 3.5541 2.2878 1.2055 34 1 3.5906 0.5105 1.2951 35 1 4.4619 0.5330 4.0180 36 1 4.5294 1.9327 2.9205 37 1 4.3584 2.1842 4.6743 38 1 1.2113 0.6297 5.0419 39 1 2.0562 1.6890 7.0841 40 1 3.5921 1.8519 6.1273 41 1 2.8365 3.9444 5.0993 42 1 0.8578 4.1390 7.3213 43 1 0.7260 6.4362 9.7364 44 1 0.7266 3.2931 4.0360 45 1 0.0372 2.7045 5.6106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486473798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:26 Heat of formation + Delta-G solvation = -6.374760 kcal Electronic energy + Delta-G solvation = -22332.712318 eV Core-core repulsion = 19157.913251 eV Total energy + Delta-G solvation = -3174.799067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48803 -39.52282 -37.45540 -36.07611 -34.78643 -32.58380 -32.10454 -30.95104 -28.22719 -26.87053 -25.93043 -25.58000 -23.62161 -22.50400 -21.31523 -20.38454 -19.54292 -18.94614 -17.85431 -17.37404 -16.96934 -16.53431 -15.94321 -15.85955 -15.40868 -15.31509 -14.83031 -14.55260 -14.24500 -14.05165 -13.78974 -13.52840 -13.39798 -13.24475 -13.01168 -12.86668 -12.73676 -12.58237 -12.55437 -12.20374 -12.09905 -12.02204 -11.88440 -11.64778 -11.62735 -11.32613 -11.22260 -10.88551 -10.64105 -9.97942 -9.49013 -9.01934 -7.95058 -5.24771 1.47378 1.50768 1.56824 1.57279 1.80298 2.08228 2.56296 3.35171 3.49159 3.77093 3.85988 3.87497 3.92357 3.96181 4.22998 4.30039 4.33611 4.39895 4.44847 4.49472 4.59634 4.66556 4.68726 4.70714 4.85893 4.87264 4.94242 5.00367 5.03872 5.08880 5.10119 5.15032 5.21285 5.24091 5.31258 5.42423 5.49228 5.50109 5.78529 5.85823 6.09801 6.25968 6.55704 7.31774 7.34804 8.07253 8.31276 9.28264 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.003288 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.774018 B = 8513.117244 C = 8725.994425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.053 0.947 5 C -0.109 4.109 6 C -0.153 4.153 7 C -0.124 4.124 8 C 0.501 3.499 9 O -0.570 6.570 10 N -0.601 5.601 11 C 0.063 3.937 12 C 0.139 3.861 13 C -0.155 4.155 14 C 0.158 3.842 15 N -0.729 5.729 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.273 1.273 24 C -0.149 4.149 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -13.531 -20.230 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.162 4.162 3 C -0.065 4.065 4 H 0.072 0.928 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.163 4.163 8 C 0.290 3.710 9 O -0.449 6.449 10 N -0.335 5.335 11 C -0.079 4.079 12 C 0.034 3.966 13 C -0.195 4.195 14 C 0.048 3.952 15 N -0.366 5.366 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.199 1.199 24 C -0.189 4.189 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.599 -13.399 -20.264 25.770 hybrid contribution -0.569 0.839 1.056 1.464 sum 8.030 -12.560 -19.208 24.314 Atomic orbital electron populations 1.23679 0.96669 1.00729 1.01089 1.22843 0.95710 0.98031 0.99610 1.20170 0.96602 0.95693 0.94005 0.92815 1.21507 0.97507 1.03228 0.92415 1.21772 0.99932 1.01388 0.97910 1.21798 0.98207 1.06284 0.90050 1.21405 0.89127 0.75329 0.85097 1.90695 1.16748 1.50630 1.86780 1.47762 1.07973 1.72951 1.04790 1.22159 0.77721 1.03367 1.04616 1.21460 0.92736 0.96568 0.85789 1.23982 1.01329 0.98399 0.95820 1.21846 0.95219 0.89530 0.88565 1.42625 1.21628 1.36823 1.35543 1.19685 0.99926 1.07491 1.10644 0.90214 1.25622 0.98902 1.02770 0.99645 1.69822 1.23327 1.43266 1.25847 0.85188 0.78130 0.79052 0.77254 1.20404 1.22427 1.19932 1.23601 0.98363 0.97369 0.99606 0.88666 0.90593 0.86543 0.90688 0.90205 0.93084 0.93821 0.91641 0.86757 0.86198 0.90566 0.88234 0.90972 0.90726 0.90298 0.89274 0.90833 0.79592 0.94021 0.93158 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 13.22 67.77 0.90 -3.40 16 2 C -0.14 -2.86 6.76 25.64 0.17 -2.68 16 3 C -0.05 -0.83 1.81 -11.54 -0.02 -0.85 16 4 H 0.05 1.28 7.60 -2.39 -0.02 1.26 16 5 C -0.11 -1.36 5.39 30.59 0.16 -1.19 16 6 C -0.15 -2.08 9.73 71.98 0.70 -1.38 16 7 C -0.12 -2.00 3.64 29.85 0.11 -1.90 16 8 C 0.50 13.02 7.14 87.66 0.63 13.65 16 9 O -0.57 -19.59 13.36 -3.03 -0.04 -19.63 16 10 N -0.60 -14.97 3.01 -819.66 -2.47 -17.44 16 11 C 0.06 1.04 9.74 127.77 1.24 2.28 16 12 C 0.14 4.28 4.09 45.51 0.19 4.47 16 13 C -0.15 -5.03 7.00 31.12 0.22 -4.81 16 14 C 0.16 6.33 4.25 45.52 0.19 6.52 16 15 N -0.73 -37.47 5.40 -320.44 -1.73 -39.20 16 16 C -0.25 -13.63 9.97 84.03 0.84 -12.80 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -60.25 13.06 21.65 0.28 -59.96 16 20 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.15 -5.62 7.18 31.12 0.22 -5.40 16 25 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.08 2.04 7.83 -2.91 -0.02 2.01 16 27 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.75 7.38 -2.39 -0.02 0.73 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.11 1.41 7.42 -2.39 -0.02 1.39 16 34 H 0.12 1.29 8.11 -2.39 -0.02 1.27 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.08 6.25 -2.38 -0.01 1.07 16 37 H 0.07 1.38 5.63 -2.39 -0.01 1.36 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.09 2.48 5.81 -2.39 -0.01 2.46 16 41 H 0.07 2.91 7.99 -2.39 -0.02 2.89 16 42 H 0.37 20.79 7.92 -92.71 -0.73 20.06 16 43 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.05 2.01 7.41 -2.39 -0.02 1.99 16 45 H 0.07 2.85 8.12 -2.39 -0.02 2.83 16 Total: -1.00 -70.49 357.85 4.30 -66.19 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.22 Total: 33.62 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 6.02 Total: -11.47 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.92 Total: -116.61 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.04 Total: -19.63 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.49 4.30 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486473798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.811 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds