Wall clock time and date at job start Tue Mar 31 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47250 * 2 1 4 4 N 1.46502 * 109.47611 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99709 * 270.00103 * 4 3 2 6 6 H 1.08001 * 120.00211 * 38.12811 * 5 4 3 7 7 C 1.38817 * 119.99904 * 218.12598 * 5 4 3 8 8 N 1.31626 * 119.99527 * 21.28105 * 7 5 4 9 9 Si 1.86792 * 120.00181 * 201.27865 * 7 5 4 10 10 H 1.48507 * 109.47091 * 90.00049 * 9 7 5 11 11 H 1.48500 * 109.47217 * 209.99939 * 9 7 5 12 12 H 1.48504 * 109.47319 * 330.00527 * 9 7 5 13 13 C 1.46501 * 120.00237 * 89.99463 * 4 3 2 14 14 C 1.52999 * 109.47169 * 264.50819 * 13 4 3 15 15 N 1.46501 * 109.47169 * 179.97438 * 14 13 4 16 16 C 1.34774 * 120.00043 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.53000 * 110.43577 * 60.89238 * 18 16 15 20 20 C 1.51106 * 110.38571 * 298.54652 * 18 16 15 21 21 C 1.30531 * 111.10242 * 257.86813 * 20 18 16 22 22 C 1.51099 * 111.10274 * 359.61458 * 21 20 18 23 23 C 1.54632 * 104.78527 * 343.93036 * 22 21 20 24 24 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 300.00432 * 1 2 3 26 26 H 1.09002 * 109.47099 * 60.00598 * 1 2 3 27 27 H 1.09000 * 109.47394 * 240.00087 * 2 1 3 28 28 H 1.08999 * 109.47506 * 119.99717 * 2 1 3 29 29 H 1.08993 * 109.47510 * 59.99733 * 3 2 1 30 30 H 1.09007 * 109.47016 * 299.99762 * 3 2 1 31 31 H 0.97000 * 119.99060 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47255 * 144.50386 * 13 4 3 33 33 H 1.09004 * 109.46823 * 24.50415 * 13 4 3 34 34 H 1.09002 * 109.47385 * 59.99647 * 14 13 4 35 35 H 1.09004 * 109.46918 * 299.99538 * 14 13 4 36 36 H 0.96999 * 119.99993 * 359.97438 * 15 14 13 37 37 H 1.08997 * 109.47101 * 299.10913 * 19 18 16 38 38 H 1.08999 * 109.46763 * 59.10711 * 19 18 16 39 39 H 1.09004 * 109.47064 * 179.10263 * 19 18 16 40 40 H 1.08001 * 124.44564 * 77.60416 * 20 18 16 41 41 H 1.07998 * 124.44333 * 179.73422 * 21 20 18 42 42 H 1.09002 * 110.52411 * 225.01348 * 22 21 20 43 43 H 1.09006 * 110.29087 * 102.73217 * 22 21 20 44 44 H 1.08994 * 111.04065 * 266.41042 * 23 22 21 45 45 H 1.08999 * 111.07081 * 142.48230 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4959 9 14 6.5944 1.7569 2.6444 10 1 7.5729 0.7742 2.1131 11 1 7.3093 2.9871 3.0693 12 1 5.8854 1.1690 3.8093 13 6 4.2370 1.4427 -1.2696 14 6 4.6115 0.0069 -1.6425 15 7 5.3430 0.0069 -2.9118 16 6 5.7769 -1.1548 -3.4396 17 8 5.5614 -2.2003 -2.8640 18 6 6.5299 -1.1547 -4.7450 19 6 7.8187 -0.3400 -4.6182 20 6 5.6637 -0.6005 -5.8522 21 6 5.1818 -1.5586 -6.5962 22 6 5.6538 -2.9109 -6.1149 23 6 6.8488 -2.6030 -5.1831 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 6.4038 3.7089 0.5856 32 1 5.1433 2.0395 -1.1663 33 1 3.6084 1.8690 -2.0516 34 1 3.7052 -0.5899 -1.7459 35 1 5.2400 -0.4194 -0.8606 36 1 5.5150 0.8431 -3.3724 37 1 7.5732 0.6914 -4.3654 38 1 8.4431 -0.7677 -3.8338 39 1 8.3581 -0.3636 -5.5652 40 1 5.4657 0.4502 -6.0051 41 1 4.5326 -1.4048 -7.4455 42 1 5.9763 -3.5247 -6.9559 43 1 4.8603 -3.4133 -5.5615 44 1 7.7917 -2.6483 -5.7280 45 1 6.8617 -3.2770 -4.3265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493308727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:19 Heat of formation + Delta-G solvation = -17.500408 kcal Electronic energy + Delta-G solvation = -22701.910192 eV Core-core repulsion = 19526.628680 eV Total energy + Delta-G solvation = -3175.281511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34478 -37.52410 -36.37004 -34.21281 -32.88960 -31.63089 -30.68674 -29.04489 -27.93637 -25.56656 -25.03569 -23.60396 -21.89608 -20.81570 -20.19868 -19.74960 -18.66948 -17.05282 -16.51903 -15.76650 -15.17609 -15.04529 -14.54878 -14.35726 -14.28115 -13.84378 -13.31130 -13.15182 -12.93669 -12.78687 -12.54863 -12.20698 -11.96968 -11.86916 -11.58882 -11.48998 -11.23560 -11.15298 -11.08906 -10.93423 -10.78620 -10.75833 -10.41911 -10.33734 -10.07116 -9.86732 -9.81910 -9.63228 -8.82332 -8.54626 -8.40267 -6.61805 -5.82059 -3.43665 2.10348 3.06142 3.35397 3.42858 3.45083 3.67981 4.44607 4.46408 4.58962 4.91660 5.02839 5.23171 5.28109 5.35812 5.45958 5.48898 5.64788 5.65870 5.67011 5.76028 5.79619 5.88937 6.02106 6.03453 6.11688 6.15432 6.23358 6.28771 6.30884 6.36596 6.42865 6.55240 6.62285 6.67602 6.77240 6.94819 6.97288 7.06317 7.17294 7.56411 7.80612 8.00752 8.48132 8.66529 9.14556 9.76238 10.34405 11.16158 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.005110 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.388858 B = 5477.980584 C = 6675.546948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.136 3.864 14 C 0.099 3.901 15 N -0.716 5.716 16 C 0.524 3.476 17 O -0.547 6.547 18 C -0.061 4.061 19 C -0.135 4.135 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.102 4.102 23 C -0.108 4.108 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.255 0.745 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -5.791 -13.467 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.300 5.300 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.026 4.026 15 N -0.365 5.365 16 C 0.309 3.691 17 O -0.425 6.425 18 C -0.065 4.065 19 C -0.193 4.193 20 C -0.176 4.176 21 C -0.173 4.173 22 C -0.139 4.139 23 C -0.145 4.145 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.008 -6.373 -12.984 14.464 hybrid contribution 0.714 0.235 0.409 0.856 sum 0.706 -6.137 -12.575 14.011 Atomic orbital electron populations 1.21718 0.97318 1.00384 1.01005 1.22204 0.93847 1.01016 1.01506 1.20944 0.85062 0.92845 0.98963 1.43602 0.99409 1.85109 1.01832 1.19030 1.06080 1.22596 0.91339 0.92108 1.25184 1.00808 0.94617 0.97966 1.69979 1.25949 1.17107 1.39861 0.86398 0.81696 0.77519 0.81847 1.21234 1.21694 1.20133 1.21073 0.99505 0.91845 0.86757 1.22386 0.94905 1.02230 0.83061 1.46083 1.57032 1.08473 1.24961 1.20216 0.79149 0.84021 0.85746 1.90645 1.57698 1.31657 1.62487 1.20670 0.95551 0.97562 0.92670 1.21780 0.95316 0.99730 1.02428 1.23095 0.99398 0.99296 0.95797 1.23353 0.99437 0.95191 0.99273 1.21385 0.98098 0.95760 0.98667 1.22465 0.97780 0.94353 0.99944 0.93831 0.93193 0.93464 0.93016 0.92397 0.93279 0.95016 0.93546 0.88507 0.95309 0.93157 0.91788 0.77095 0.91795 0.91926 0.91569 0.85289 0.85624 0.91160 0.90374 0.90726 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.15 0.37 -1.82 16 2 C -0.15 -2.69 6.26 -26.74 -0.17 -2.86 16 3 C 0.15 3.10 5.71 -4.04 -0.02 3.08 16 4 N -0.58 -14.06 2.43 -173.23 -0.42 -14.48 16 5 C -0.26 -7.00 9.42 -15.06 -0.14 -7.14 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.40 5.00 -17.43 -0.09 0.31 16 8 N -0.89 -24.67 11.43 55.49 0.63 -24.04 16 9 Si 0.90 21.49 29.60 -169.99 -5.03 16.46 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.14 3.02 5.50 -4.04 -0.02 3.00 16 14 C 0.10 2.07 5.97 -4.04 -0.02 2.05 16 15 N -0.72 -12.41 5.41 -60.29 -0.33 -12.74 16 16 C 0.52 9.10 6.54 -10.99 -0.07 9.03 16 17 O -0.55 -11.55 15.44 5.55 0.09 -11.46 16 18 C -0.06 -0.80 0.73 -155.75 -0.11 -0.91 16 19 C -0.14 -1.53 8.41 37.16 0.31 -1.22 16 20 C -0.16 -1.79 9.29 -35.70 -0.33 -2.12 16 21 C -0.15 -1.66 10.78 -35.70 -0.38 -2.04 16 22 C -0.10 -1.14 6.80 -26.83 -0.18 -1.32 16 23 C -0.11 -1.32 6.05 -25.01 -0.15 -1.47 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.98 6.65 -51.93 -0.35 0.64 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.03 0.63 7.86 -51.92 -0.41 0.22 16 31 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.10 2.42 5.53 -51.93 -0.29 2.13 16 33 H 0.03 0.59 7.83 -51.93 -0.41 0.19 16 34 H 0.05 1.08 6.65 -51.93 -0.35 0.73 16 35 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.40 5.89 8.00 -40.82 -0.33 5.57 16 37 H 0.06 0.70 7.74 -51.93 -0.40 0.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 45 H 0.09 1.29 6.91 -51.93 -0.36 0.93 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -30.20 360.74 -8.55 -38.75 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.91 Total: 5.51 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.02 Total: -3.44 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.11 Total: -51.26 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.20 -8.55 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493308727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.252 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds