Wall clock time and date at job start Tue Mar 31 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47250 * 2 1 4 4 N 1.46502 * 109.47611 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99709 * 270.00103 * 4 3 2 6 6 H 1.08001 * 120.00211 * 38.12811 * 5 4 3 7 7 C 1.38817 * 119.99904 * 218.12598 * 5 4 3 8 8 N 1.31626 * 119.99527 * 21.28105 * 7 5 4 9 9 Si 1.86792 * 120.00181 * 201.27865 * 7 5 4 10 10 H 1.48507 * 109.47091 * 90.00049 * 9 7 5 11 11 H 1.48500 * 109.47217 * 209.99939 * 9 7 5 12 12 H 1.48504 * 109.47319 * 330.00527 * 9 7 5 13 13 C 1.46501 * 120.00237 * 89.99463 * 4 3 2 14 14 C 1.52999 * 109.47169 * 264.50819 * 13 4 3 15 15 N 1.46501 * 109.47169 * 179.97438 * 14 13 4 16 16 C 1.34774 * 120.00043 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.53000 * 110.43577 * 60.89238 * 18 16 15 20 20 C 1.51106 * 110.38571 * 298.54652 * 18 16 15 21 21 C 1.30531 * 111.10242 * 257.86813 * 20 18 16 22 22 C 1.51099 * 111.10274 * 359.61458 * 21 20 18 23 23 C 1.54632 * 104.78527 * 343.93036 * 22 21 20 24 24 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 300.00432 * 1 2 3 26 26 H 1.09002 * 109.47099 * 60.00598 * 1 2 3 27 27 H 1.09000 * 109.47394 * 240.00087 * 2 1 3 28 28 H 1.08999 * 109.47506 * 119.99717 * 2 1 3 29 29 H 1.08993 * 109.47510 * 59.99733 * 3 2 1 30 30 H 1.09007 * 109.47016 * 299.99762 * 3 2 1 31 31 H 0.97000 * 119.99060 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47255 * 144.50386 * 13 4 3 33 33 H 1.09004 * 109.46823 * 24.50415 * 13 4 3 34 34 H 1.09002 * 109.47385 * 59.99647 * 14 13 4 35 35 H 1.09004 * 109.46918 * 299.99538 * 14 13 4 36 36 H 0.96999 * 119.99993 * 359.97438 * 15 14 13 37 37 H 1.08997 * 109.47101 * 299.10913 * 19 18 16 38 38 H 1.08999 * 109.46763 * 59.10711 * 19 18 16 39 39 H 1.09004 * 109.47064 * 179.10263 * 19 18 16 40 40 H 1.08001 * 124.44564 * 77.60416 * 20 18 16 41 41 H 1.07998 * 124.44333 * 179.73422 * 21 20 18 42 42 H 1.09002 * 110.52411 * 225.01348 * 22 21 20 43 43 H 1.09006 * 110.29087 * 102.73217 * 22 21 20 44 44 H 1.08994 * 111.04065 * 266.41042 * 23 22 21 45 45 H 1.08999 * 111.07081 * 142.48230 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4959 9 14 6.5944 1.7569 2.6444 10 1 7.5729 0.7742 2.1131 11 1 7.3093 2.9871 3.0693 12 1 5.8854 1.1690 3.8093 13 6 4.2370 1.4427 -1.2696 14 6 4.6115 0.0069 -1.6425 15 7 5.3430 0.0069 -2.9118 16 6 5.7769 -1.1548 -3.4396 17 8 5.5614 -2.2003 -2.8640 18 6 6.5299 -1.1547 -4.7450 19 6 7.8187 -0.3400 -4.6182 20 6 5.6637 -0.6005 -5.8522 21 6 5.1818 -1.5586 -6.5962 22 6 5.6538 -2.9109 -6.1149 23 6 6.8488 -2.6030 -5.1831 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 6.4038 3.7089 0.5856 32 1 5.1433 2.0395 -1.1663 33 1 3.6084 1.8690 -2.0516 34 1 3.7052 -0.5899 -1.7459 35 1 5.2400 -0.4194 -0.8606 36 1 5.5150 0.8431 -3.3724 37 1 7.5732 0.6914 -4.3654 38 1 8.4431 -0.7677 -3.8338 39 1 8.3581 -0.3636 -5.5652 40 1 5.4657 0.4502 -6.0051 41 1 4.5326 -1.4048 -7.4455 42 1 5.9763 -3.5247 -6.9559 43 1 4.8603 -3.4133 -5.5615 44 1 7.7917 -2.6483 -5.7280 45 1 6.8617 -3.2770 -4.3265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493308727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:18 Heat of formation + Delta-G solvation = -34.630487 kcal Electronic energy + Delta-G solvation = -22702.653007 eV Core-core repulsion = 19526.628680 eV Total energy + Delta-G solvation = -3176.024327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56437 -38.83057 -38.06479 -35.78066 -34.62638 -32.88294 -32.27364 -30.08736 -29.44510 -27.36119 -26.09516 -25.16827 -23.26034 -22.46561 -21.83821 -20.84049 -19.86241 -18.61540 -17.96967 -17.09143 -17.02493 -16.40064 -16.13730 -15.85358 -15.59591 -15.47207 -14.80152 -14.42680 -14.34932 -14.22288 -13.95456 -13.37991 -13.25678 -13.08162 -12.93011 -12.85173 -12.74320 -12.66660 -12.53118 -12.28551 -12.12712 -12.08965 -12.01040 -11.89718 -11.71257 -11.68493 -11.35790 -10.99738 -10.56372 -10.03914 -9.82709 -8.60626 -7.85476 -5.51510 1.21141 1.41490 1.45826 1.52300 1.70165 2.26407 2.49533 3.20271 3.50374 3.63462 3.71567 3.88339 4.08572 4.19642 4.29161 4.33804 4.36429 4.46156 4.53124 4.57068 4.66193 4.71306 4.78351 4.81109 4.84552 4.92297 4.97514 5.00344 5.11570 5.15087 5.19894 5.21116 5.25022 5.34268 5.41420 5.45153 5.52618 5.60281 5.63981 5.74526 5.94984 6.43392 6.61405 7.13094 7.27542 7.80834 8.33297 9.08208 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.005110 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.388858 B = 5477.980584 C = 6675.546948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.144 3.856 14 C 0.122 3.878 15 N -0.709 5.709 16 C 0.518 3.482 17 O -0.591 6.591 18 C -0.057 4.057 19 C -0.133 4.133 20 C -0.169 4.169 21 C -0.146 4.146 22 C -0.105 4.105 23 C -0.111 4.111 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.025 0.975 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -5.644 -15.485 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.219 1.219 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.017 3.983 14 C -0.004 4.004 15 N -0.360 5.360 16 C 0.305 3.695 17 O -0.471 6.471 18 C -0.061 4.061 19 C -0.191 4.191 20 C -0.187 4.187 21 C -0.163 4.163 22 C -0.142 4.142 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.246 0.754 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.328 -6.211 -15.022 16.259 hybrid contribution 0.775 0.139 1.018 1.287 sum 0.447 -6.073 -14.004 15.271 Atomic orbital electron populations 1.21649 0.94122 1.01780 1.02067 1.22029 0.96552 0.98810 1.00113 1.21059 0.83299 0.94415 0.99162 1.43839 1.00871 1.85368 1.01672 1.19142 1.06755 1.22157 0.92085 0.93251 1.25730 1.02017 0.94700 0.99893 1.70061 1.26230 1.17750 1.41106 0.85577 0.79670 0.77067 0.80017 1.21855 1.21273 1.19630 1.20937 0.98689 0.92051 0.86646 1.21850 0.94046 1.00845 0.83674 1.45946 1.56694 1.09549 1.23779 1.21135 0.78443 0.82965 0.86912 1.90622 1.59301 1.33147 1.64074 1.20706 0.96039 0.98794 0.90524 1.21810 0.94387 0.99369 1.03488 1.23192 0.99806 1.00489 0.95247 1.23617 0.98779 0.94350 0.99587 1.21423 0.97086 0.96639 0.99045 1.22508 0.99627 0.93218 0.99512 0.92297 0.92526 0.92012 0.93790 0.94418 0.94211 0.93519 0.93654 0.90851 0.93430 0.93846 0.95690 0.75430 0.91445 0.93250 0.88818 0.83422 0.83055 0.88623 0.92326 0.88185 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.14 -4.95 6.26 30.59 0.19 -4.75 16 3 C 0.15 6.07 5.71 86.38 0.49 6.56 16 4 N -0.60 -29.35 2.43 -701.98 -1.71 -31.06 16 5 C -0.27 -14.85 9.42 84.04 0.79 -14.06 16 6 H 0.05 2.77 7.92 -2.91 -0.02 2.74 16 7 C -0.03 -1.37 5.00 84.86 0.42 -0.95 16 8 N -0.91 -51.05 11.43 21.65 0.25 -50.80 16 9 Si 0.95 44.82 29.60 68.60 2.03 46.85 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.14 6.48 5.50 86.38 0.47 6.96 16 14 C 0.12 5.23 5.97 86.38 0.52 5.75 16 15 N -0.71 -24.67 5.41 -463.05 -2.51 -27.18 16 16 C 0.52 18.13 6.54 87.66 0.57 18.70 16 17 O -0.59 -25.82 15.44 -3.04 -0.05 -25.87 16 18 C -0.06 -1.43 0.73 -52.99 -0.04 -1.47 16 19 C -0.13 -2.78 8.41 71.98 0.61 -2.18 16 20 C -0.17 -3.39 9.29 26.26 0.24 -3.15 16 21 C -0.15 -2.68 10.78 26.26 0.28 -2.39 16 22 C -0.11 -2.15 6.80 30.53 0.21 -1.94 16 23 C -0.11 -2.59 6.05 31.71 0.19 -2.40 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.66 6.65 -2.39 -0.02 1.64 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 30 H 0.05 1.79 7.86 -2.38 -0.02 1.77 16 31 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.07 3.73 5.53 -2.39 -0.01 3.71 16 33 H 0.05 1.93 7.83 -2.39 -0.02 1.92 16 34 H 0.04 1.91 6.65 -2.39 -0.02 1.89 16 35 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 11.90 8.00 -92.71 -0.74 11.15 16 37 H 0.07 1.35 7.74 -2.39 -0.02 1.33 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.46 8.13 -2.38 -0.02 1.44 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.10 1.80 7.90 -2.39 -0.02 1.78 16 45 H 0.06 1.83 6.91 -2.39 -0.02 1.82 16 Total: -1.00 -66.64 360.74 3.90 -62.74 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.21 Total: 23.78 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 5.67 Total: 1.54 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.97 Total: -109.04 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.64 3.90 -62.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493308727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.114 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds