Wall clock time and date at job start Tue Mar 31 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47042 * 2 1 4 4 N 1.46497 * 109.46818 * 119.99932 * 2 1 3 5 5 C 1.36941 * 120.00384 * 294.90166 * 4 2 1 6 6 H 1.08008 * 119.99508 * 37.14562 * 5 4 2 7 7 C 1.38812 * 120.00433 * 217.15078 * 5 4 2 8 8 N 1.31611 * 119.99865 * 21.26393 * 7 5 4 9 9 Si 1.86801 * 119.99810 * 201.26407 * 7 5 4 10 10 H 1.48503 * 109.47018 * 90.00225 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99480 * 9 7 5 12 12 H 1.48496 * 109.47116 * 329.99871 * 9 7 5 13 13 C 1.46499 * 120.00346 * 114.90477 * 4 2 1 14 14 C 1.52996 * 109.47254 * 270.00076 * 13 4 2 15 15 C 1.53003 * 109.47243 * 179.97438 * 14 13 4 16 16 N 1.46501 * 109.47102 * 179.97438 * 15 14 13 17 17 C 1.34772 * 119.99826 * 179.72945 * 16 15 14 18 18 O 1.21610 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.47104 * 120.00064 * 180.02562 * 17 16 15 20 20 C 1.32989 * 120.00034 * 179.97438 * 19 17 16 21 21 C 1.51406 * 136.32112 * 359.63475 * 20 19 17 22 22 C 1.53370 * 87.51969 * 206.05335 * 21 20 19 23 23 C 1.51411 * 136.31390 * 179.97438 * 20 19 17 24 24 H 1.08994 * 109.47302 * 303.31057 * 1 2 3 25 25 H 1.08996 * 109.46544 * 63.31286 * 1 2 3 26 26 H 1.08997 * 109.46981 * 183.31052 * 1 2 3 27 27 H 1.09001 * 109.47441 * 239.99928 * 2 1 3 28 28 H 1.09003 * 109.47049 * 181.61452 * 3 2 1 29 29 H 1.09005 * 109.47366 * 301.61775 * 3 2 1 30 30 H 1.09001 * 109.47473 * 61.61787 * 3 2 1 31 31 H 0.97006 * 119.99815 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47755 * 149.99477 * 13 4 2 33 33 H 1.09010 * 109.46761 * 29.99839 * 13 4 2 34 34 H 1.08995 * 109.47286 * 59.99545 * 14 13 4 35 35 H 1.09001 * 109.47057 * 299.99843 * 14 13 4 36 36 H 1.09001 * 109.46879 * 60.00214 * 15 14 13 37 37 H 1.08996 * 109.46920 * 299.99921 * 15 14 13 38 38 H 0.96997 * 120.00079 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.99897 * 359.97438 * 19 17 16 40 40 H 1.09001 * 113.55399 * 320.63238 * 21 20 19 41 41 H 1.08998 * 113.55927 * 91.36282 * 21 20 19 42 42 H 1.08997 * 113.96972 * 220.28977 * 22 21 20 43 43 H 1.09002 * 113.60623 * 88.79240 * 22 21 20 44 44 H 1.09001 * 113.56121 * 268.63290 * 23 20 19 45 45 H 1.09000 * 113.55877 * 39.36741 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7757 -0.1651 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2581 3.4311 8 7 4.0012 -0.4529 3.1081 9 14 2.2487 -0.1069 5.2269 10 1 1.9206 -1.4514 5.7652 11 1 3.3746 0.4749 6.0010 12 1 1.0603 0.7761 5.3421 13 6 2.7661 -1.9434 1.0648 14 6 1.7930 -3.1237 1.0929 15 6 2.5740 -4.4321 0.9551 16 7 1.6422 -5.5623 0.9827 17 6 2.1075 -6.8221 0.8706 18 8 3.3008 -7.0208 0.7460 19 6 1.1718 -7.9569 0.8977 20 6 1.6309 -9.2001 0.7865 21 6 2.9847 -9.8563 0.6157 22 6 2.2570 -11.0312 -0.0494 23 6 1.0324 -10.5908 0.7682 24 1 -0.3633 0.5643 0.8588 25 1 -0.3632 0.4615 -0.9182 26 1 -0.3633 -1.0259 0.0593 27 1 1.8934 -0.5138 -0.8900 28 1 3.1296 1.4426 -0.0290 29 1 1.6532 1.9647 -0.8751 30 1 1.7006 1.9479 0.9041 31 1 4.6754 -0.5175 3.8027 32 1 3.4713 -2.0341 1.8910 33 1 3.3109 -1.9441 0.1205 34 1 1.0879 -3.0330 0.2667 35 1 1.2483 -3.1230 2.0371 36 1 3.2793 -4.5230 1.7812 37 1 3.1183 -4.4325 0.0108 38 1 0.6900 -5.4036 1.0780 39 1 0.1121 -7.7805 1.0078 40 1 3.6477 -9.3172 -0.0610 41 1 3.4640 -10.1182 1.5589 42 1 2.6458 -12.0096 0.2326 43 1 2.1330 -10.9147 -1.1261 44 1 0.9766 -11.0541 1.7533 45 1 0.0944 -10.6541 0.2167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493858879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:09 Heat of formation + Delta-G solvation = 7.750147 kcal Electronic energy + Delta-G solvation = -21727.783216 eV Core-core repulsion = 18553.596651 eV Total energy + Delta-G solvation = -3174.186565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72513 -38.37153 -36.73993 -34.85863 -32.49187 -31.71937 -30.68515 -28.66829 -26.17338 -25.97560 -25.42296 -23.75540 -22.61466 -20.84499 -20.44914 -19.49916 -18.23274 -16.82209 -16.35332 -15.79536 -15.65376 -15.27009 -14.87475 -14.45217 -14.12914 -13.92420 -13.61303 -13.27868 -12.82732 -12.67124 -12.39541 -12.16685 -11.90962 -11.68189 -11.46936 -11.38566 -11.28294 -11.20873 -10.93830 -10.75780 -10.69568 -10.59441 -10.39611 -10.16992 -9.91879 -9.60879 -9.54313 -9.43478 -9.33042 -8.69980 -8.44636 -6.52903 -5.74618 -3.32620 1.32744 3.36205 3.40139 3.45450 3.45713 3.45947 4.24318 4.32171 4.49862 4.55137 4.87805 5.10489 5.26521 5.30123 5.39057 5.40742 5.47688 5.57798 5.72062 5.75824 5.88386 5.96524 6.00433 6.08866 6.11110 6.20884 6.34058 6.44615 6.46598 6.48296 6.50891 6.72349 6.75274 6.78613 6.81490 6.86983 7.15548 7.23747 7.36075 7.72531 7.78857 7.87097 8.46769 8.56563 9.23576 9.86533 10.45106 11.25059 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.003303 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.744889 B = 8475.218640 C = 9186.222964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.145 4.145 4 N -0.580 5.580 5 C -0.251 4.251 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.151 3.849 14 C -0.145 4.145 15 C 0.122 3.878 16 N -0.722 5.722 17 C 0.543 3.457 18 O -0.547 6.547 19 C -0.195 4.195 20 C -0.069 4.069 21 C -0.105 4.105 22 C -0.143 4.143 23 C -0.108 4.108 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.097 0.903 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.399 0.601 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -15.606 -6.022 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.300 5.300 5 C -0.381 4.381 6 H 0.077 0.923 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.023 3.977 14 C -0.185 4.185 15 C -0.002 4.002 16 N -0.372 5.372 17 C 0.332 3.668 18 O -0.427 6.427 19 C -0.216 4.216 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.180 4.180 23 C -0.145 4.145 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.819 -15.689 -6.014 17.781 hybrid contribution -0.846 0.229 1.091 1.400 sum -6.665 -15.459 -4.922 17.539 Atomic orbital electron populations 1.22206 0.98954 1.00475 0.99694 1.20411 0.91933 0.92313 0.89856 1.22038 1.00829 0.97855 0.99695 1.43865 1.64349 1.20534 1.01221 1.18908 0.97448 1.34507 0.87257 0.92290 1.25155 0.94534 1.00542 0.98648 1.69982 0.99387 1.51637 1.31864 0.86449 0.77664 0.77844 0.85770 1.21421 1.21830 1.20377 1.20817 0.93089 0.82881 1.00874 1.22488 1.00375 0.94233 1.01452 1.21453 0.92322 0.84691 1.01729 1.46073 1.11227 1.06014 1.73909 1.18432 0.88277 0.83222 0.76917 1.90760 1.16479 1.85446 1.50004 1.21678 0.99629 0.91356 1.08894 1.23424 0.99023 0.93393 0.91241 1.22201 0.95145 0.95147 1.01717 1.22732 0.96830 0.98696 0.99758 1.22344 0.98647 0.92276 1.01225 0.92979 0.94651 0.93782 0.93744 0.93337 0.95227 0.92369 0.93616 0.88554 0.95788 0.93315 0.91709 0.91584 0.92098 0.76769 0.85141 0.89497 0.88525 0.90505 0.89795 0.88241 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.19 37.16 0.34 -2.46 16 2 C 0.16 3.33 3.37 -67.93 -0.23 3.10 16 3 C -0.15 -2.94 9.11 37.16 0.34 -2.61 16 4 N -0.58 -13.74 2.37 -165.66 -0.39 -14.13 16 5 C -0.25 -6.56 8.04 -15.06 -0.12 -6.68 16 6 H 0.06 1.56 7.14 -52.48 -0.37 1.19 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 8 N -0.89 -25.03 11.43 55.49 0.63 -24.40 16 9 Si 0.89 21.32 29.60 -169.99 -5.03 16.29 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.15 3.38 5.28 -4.04 -0.02 3.36 16 14 C -0.14 -2.69 5.65 -26.73 -0.15 -2.84 16 15 C 0.12 2.10 5.67 -4.04 -0.02 2.08 16 16 N -0.72 -10.61 5.55 -61.49 -0.34 -10.96 16 17 C 0.54 8.43 7.76 -12.67 -0.10 8.33 16 18 O -0.55 -10.41 15.15 5.27 0.08 -10.33 16 19 C -0.19 -2.31 10.03 -37.81 -0.38 -2.69 16 20 C -0.07 -0.76 6.93 -100.48 -0.70 -1.45 16 21 C -0.11 -1.12 6.99 -27.56 -0.19 -1.32 16 22 C -0.14 -1.10 8.17 -26.19 -0.21 -1.32 16 23 C -0.11 -0.83 7.96 -27.39 -0.22 -1.04 16 24 H 0.05 1.00 7.32 -51.93 -0.38 0.62 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.87 7.77 -51.93 -0.40 0.47 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.10 2.49 5.48 -51.93 -0.28 2.21 16 33 H 0.02 0.52 7.88 -51.92 -0.41 0.11 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.40 4.79 8.46 -40.82 -0.35 4.44 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.09 1.10 7.49 -51.93 -0.39 0.71 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -30.20 365.78 -9.32 -39.52 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.03 Total: 3.81 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.75 Total: -5.31 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.10 Total: -49.49 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.20 -9.32 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493858879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.268 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds