Wall clock time and date at job start Tue Mar 31 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47042 * 2 1 4 4 N 1.46497 * 109.46818 * 119.99932 * 2 1 3 5 5 C 1.36941 * 120.00384 * 294.90166 * 4 2 1 6 6 H 1.08008 * 119.99508 * 37.14562 * 5 4 2 7 7 C 1.38812 * 120.00433 * 217.15078 * 5 4 2 8 8 N 1.31611 * 119.99865 * 21.26393 * 7 5 4 9 9 Si 1.86801 * 119.99810 * 201.26407 * 7 5 4 10 10 H 1.48503 * 109.47018 * 90.00225 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99480 * 9 7 5 12 12 H 1.48496 * 109.47116 * 329.99871 * 9 7 5 13 13 C 1.46499 * 120.00346 * 114.90477 * 4 2 1 14 14 C 1.52996 * 109.47254 * 270.00076 * 13 4 2 15 15 C 1.53003 * 109.47243 * 179.97438 * 14 13 4 16 16 N 1.46501 * 109.47102 * 179.97438 * 15 14 13 17 17 C 1.34772 * 119.99826 * 179.72945 * 16 15 14 18 18 O 1.21610 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.47104 * 120.00064 * 180.02562 * 17 16 15 20 20 C 1.32989 * 120.00034 * 179.97438 * 19 17 16 21 21 C 1.51406 * 136.32112 * 359.63475 * 20 19 17 22 22 C 1.53370 * 87.51969 * 206.05335 * 21 20 19 23 23 C 1.51411 * 136.31390 * 179.97438 * 20 19 17 24 24 H 1.08994 * 109.47302 * 303.31057 * 1 2 3 25 25 H 1.08996 * 109.46544 * 63.31286 * 1 2 3 26 26 H 1.08997 * 109.46981 * 183.31052 * 1 2 3 27 27 H 1.09001 * 109.47441 * 239.99928 * 2 1 3 28 28 H 1.09003 * 109.47049 * 181.61452 * 3 2 1 29 29 H 1.09005 * 109.47366 * 301.61775 * 3 2 1 30 30 H 1.09001 * 109.47473 * 61.61787 * 3 2 1 31 31 H 0.97006 * 119.99815 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47755 * 149.99477 * 13 4 2 33 33 H 1.09010 * 109.46761 * 29.99839 * 13 4 2 34 34 H 1.08995 * 109.47286 * 59.99545 * 14 13 4 35 35 H 1.09001 * 109.47057 * 299.99843 * 14 13 4 36 36 H 1.09001 * 109.46879 * 60.00214 * 15 14 13 37 37 H 1.08996 * 109.46920 * 299.99921 * 15 14 13 38 38 H 0.96997 * 120.00079 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.99897 * 359.97438 * 19 17 16 40 40 H 1.09001 * 113.55399 * 320.63238 * 21 20 19 41 41 H 1.08998 * 113.55927 * 91.36282 * 21 20 19 42 42 H 1.08997 * 113.96972 * 220.28977 * 22 21 20 43 43 H 1.09002 * 113.60623 * 88.79240 * 22 21 20 44 44 H 1.09001 * 113.56121 * 268.63290 * 23 20 19 45 45 H 1.09000 * 113.55877 * 39.36741 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7757 -0.1651 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2581 3.4311 8 7 4.0012 -0.4529 3.1081 9 14 2.2487 -0.1069 5.2269 10 1 1.9206 -1.4514 5.7652 11 1 3.3746 0.4749 6.0010 12 1 1.0603 0.7761 5.3421 13 6 2.7661 -1.9434 1.0648 14 6 1.7930 -3.1237 1.0929 15 6 2.5740 -4.4321 0.9551 16 7 1.6422 -5.5623 0.9827 17 6 2.1075 -6.8221 0.8706 18 8 3.3008 -7.0208 0.7460 19 6 1.1718 -7.9569 0.8977 20 6 1.6309 -9.2001 0.7865 21 6 2.9847 -9.8563 0.6157 22 6 2.2570 -11.0312 -0.0494 23 6 1.0324 -10.5908 0.7682 24 1 -0.3633 0.5643 0.8588 25 1 -0.3632 0.4615 -0.9182 26 1 -0.3633 -1.0259 0.0593 27 1 1.8934 -0.5138 -0.8900 28 1 3.1296 1.4426 -0.0290 29 1 1.6532 1.9647 -0.8751 30 1 1.7006 1.9479 0.9041 31 1 4.6754 -0.5175 3.8027 32 1 3.4713 -2.0341 1.8910 33 1 3.3109 -1.9441 0.1205 34 1 1.0879 -3.0330 0.2667 35 1 1.2483 -3.1230 2.0371 36 1 3.2793 -4.5230 1.7812 37 1 3.1183 -4.4325 0.0108 38 1 0.6900 -5.4036 1.0780 39 1 0.1121 -7.7805 1.0078 40 1 3.6477 -9.3172 -0.0610 41 1 3.4640 -10.1182 1.5589 42 1 2.6458 -12.0096 0.2326 43 1 2.1330 -10.9147 -1.1261 44 1 0.9766 -11.0541 1.7533 45 1 0.0944 -10.6541 0.2167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493858879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:09 Heat of formation + Delta-G solvation = -9.344878 kcal Electronic energy + Delta-G solvation = -21728.524512 eV Core-core repulsion = 18553.596651 eV Total energy + Delta-G solvation = -3174.927861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84345 -39.28251 -38.47363 -36.28714 -34.28537 -33.27818 -31.82222 -30.32373 -27.72730 -27.18148 -26.66577 -25.21768 -23.76011 -22.38292 -21.61951 -21.28566 -19.18773 -18.21979 -17.87208 -17.04191 -16.87935 -16.57581 -16.27178 -15.94926 -15.59078 -15.32563 -14.91336 -14.82031 -14.51872 -14.04654 -13.35324 -13.31113 -13.25814 -13.13954 -12.93364 -12.83770 -12.71482 -12.63145 -12.51980 -12.34241 -12.13152 -11.91694 -11.89229 -11.70490 -11.48553 -11.32275 -11.22029 -10.71014 -10.46409 -10.32382 -9.92015 -8.48998 -7.75663 -5.37330 0.38045 1.45498 1.48734 1.55512 2.22836 2.31957 2.53953 3.29874 3.42036 3.58989 3.62942 3.83372 4.16216 4.17650 4.26526 4.34069 4.36453 4.52675 4.61359 4.63961 4.73300 4.74442 4.81007 4.85277 4.94326 4.97253 4.98949 5.04493 5.09864 5.16256 5.21293 5.23343 5.26378 5.35836 5.47458 5.49716 5.63586 5.67354 5.69225 5.75959 5.90296 6.54078 6.63718 7.24139 7.28774 7.95283 8.47375 9.19577 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.003303 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.744889 B = 8475.218640 C = 9186.222964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.151 3.849 3 C -0.137 4.137 4 N -0.594 5.594 5 C -0.243 4.243 6 H 0.056 0.944 7 C -0.039 4.039 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.269 1.269 13 C 0.150 3.850 14 C -0.120 4.120 15 C 0.135 3.865 16 N -0.713 5.713 17 C 0.536 3.464 18 O -0.593 6.593 19 C -0.210 4.210 20 C -0.072 4.072 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.093 4.093 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.247 0.753 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.164 0.836 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 -17.118 -6.819 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.045 3.955 3 C -0.196 4.196 4 N -0.315 5.315 5 C -0.374 4.374 6 H 0.074 0.926 7 C -0.236 4.236 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.193 1.193 13 C 0.023 3.977 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.364 5.364 17 C 0.327 3.673 18 O -0.475 6.475 19 C -0.230 4.230 20 C -0.074 4.074 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.130 4.130 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.251 0.749 39 H 0.181 0.819 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.651 -17.195 -6.824 20.423 hybrid contribution 0.067 0.692 1.247 1.427 sum -8.584 -16.503 -5.578 19.420 Atomic orbital electron populations 1.22048 0.96511 1.00881 1.00656 1.20672 0.93713 0.92115 0.88970 1.21955 0.99241 0.98072 1.00336 1.44098 1.64421 1.21310 1.01640 1.19053 0.96868 1.33139 0.88349 0.92596 1.25765 0.94541 1.01463 1.01806 1.70120 1.00169 1.53710 1.32310 0.85573 0.77216 0.77619 0.81919 1.21521 1.22637 1.19333 1.20705 0.93450 0.84202 0.99378 1.22119 0.99386 0.93036 1.01514 1.21096 0.92218 0.85243 1.00460 1.45895 1.11637 1.05253 1.73634 1.19141 0.88368 0.84084 0.75737 1.90741 1.18619 1.86048 1.52131 1.21697 1.00322 0.90108 1.10866 1.23959 0.99815 0.94729 0.88913 1.22352 0.95111 0.96810 1.01673 1.22723 0.96123 0.98281 0.99776 1.22387 0.99141 0.89098 1.02333 0.94428 0.91510 0.93364 0.92539 0.95768 0.91559 0.94446 0.94355 0.92121 0.95718 0.91315 0.92881 0.94160 0.92518 0.74908 0.81901 0.92478 0.88362 0.88497 0.89582 0.86402 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.19 71.98 0.66 -4.11 16 2 C 0.15 6.00 3.37 44.99 0.15 6.15 16 3 C -0.14 -5.42 9.11 71.98 0.66 -4.77 16 4 N -0.59 -28.13 2.37 -678.03 -1.61 -29.74 16 5 C -0.24 -12.77 8.04 84.03 0.68 -12.09 16 6 H 0.06 2.95 7.14 -2.91 -0.02 2.93 16 7 C -0.04 -2.13 4.96 84.86 0.42 -1.71 16 8 N -0.92 -53.65 11.43 21.65 0.25 -53.40 16 9 Si 0.95 44.53 29.60 68.60 2.03 46.56 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.15 6.84 5.28 86.38 0.46 7.29 16 14 C -0.12 -4.42 5.65 30.59 0.17 -4.25 16 15 C 0.13 4.72 5.67 86.38 0.49 5.21 16 16 N -0.71 -20.58 5.55 -466.71 -2.59 -23.17 16 17 C 0.54 16.61 7.76 86.57 0.67 17.28 16 18 O -0.59 -23.37 15.15 -4.06 -0.06 -23.43 16 19 C -0.21 -4.64 10.03 23.43 0.23 -4.40 16 20 C -0.07 -1.46 6.93 -17.17 -0.12 -1.58 16 21 C -0.12 -2.56 6.99 30.06 0.21 -2.35 16 22 C -0.13 -1.72 8.17 30.95 0.25 -1.46 16 23 C -0.09 -1.10 7.96 30.17 0.24 -0.86 16 24 H 0.04 1.36 7.32 -2.39 -0.02 1.34 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 2.10 7.77 -2.39 -0.02 2.09 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 31 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.06 3.27 5.48 -2.39 -0.01 3.26 16 33 H 0.02 1.09 7.88 -2.38 -0.02 1.07 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.41 9.25 8.46 -92.71 -0.78 8.46 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.06 1.52 7.49 -2.39 -0.02 1.51 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.76 365.78 3.36 -64.40 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.17 Total: 20.42 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.18 Total: -1.63 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.95 Total: -106.31 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.76 3.36 -64.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493858879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.056 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds