Wall clock time and date at job start Tue Mar 31 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21613 * 120.00509 * 359.97438 * 7 6 5 9 9 C 1.47098 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.50705 * 120.00179 * 359.97438 * 9 7 6 11 11 C 1.32994 * 120.00138 * 180.02562 * 9 7 6 12 12 C 1.51451 * 126.34177 * 359.67764 * 11 9 7 13 13 C 1.54273 * 106.85427 * 180.25024 * 12 11 9 14 14 C 1.54982 * 103.66142 * 23.48493 * 13 12 11 15 15 C 1.51850 * 126.34303 * 180.02562 * 11 9 7 16 16 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 3 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 3 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 3 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 30 30 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 31 31 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 32 32 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 33 33 H 1.08999 * 109.46860 * 90.00376 * 10 9 7 34 34 H 1.08998 * 109.47396 * 209.99932 * 10 9 7 35 35 H 1.08990 * 109.47223 * 330.00274 * 10 9 7 36 36 H 1.08999 * 109.98578 * 299.73685 * 12 11 9 37 37 H 1.09005 * 109.97681 * 61.03505 * 12 11 9 38 38 H 1.09000 * 110.79236 * 264.86134 * 13 12 11 39 39 H 1.08994 * 110.42776 * 141.93592 * 13 12 11 40 40 H 1.08997 * 110.83281 * 204.49191 * 14 13 12 41 41 H 1.08997 * 110.83366 * 80.90969 * 14 13 12 42 42 H 1.08995 * 110.43692 * 274.91548 * 15 11 9 43 43 H 1.08994 * 110.44123 * 37.31873 * 15 11 9 44 44 H 0.97000 * 119.99792 * 264.99726 * 16 3 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1657 2.1458 0.2576 9 6 5.8861 4.4409 -0.0350 10 6 4.9197 5.5775 -0.2485 11 6 7.1913 4.6838 0.0433 12 6 8.2838 3.6575 0.2599 13 6 9.6213 4.4260 0.2828 14 6 9.2094 5.8658 0.6816 15 6 7.8617 6.0423 -0.0607 16 7 1.6524 2.0975 -1.2518 17 6 0.4157 2.6734 -1.3688 18 1 -0.2740 2.6452 -0.5381 19 6 0.0506 3.2991 -2.5530 20 7 0.8912 3.3339 -3.5651 21 14 -1.6337 4.0915 -2.7099 22 1 -1.5562 5.5093 -2.2749 23 1 -2.0790 4.0317 -4.1253 24 1 -2.6049 3.3636 -1.8542 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 3.8500 1.0377 1.0960 31 1 3.9955 0.8311 -0.6660 32 1 3.4411 3.5483 -0.1315 33 1 4.6027 5.9711 0.7173 34 1 5.4077 6.3669 -0.8201 35 1 4.0497 5.2165 -0.7969 36 1 8.1302 3.1447 1.2094 37 1 8.2846 2.9363 -0.5574 38 1 10.0877 4.4201 -0.7024 39 1 10.2925 3.9993 1.0280 40 1 9.9436 6.5906 0.3299 41 1 9.0709 5.9448 1.7599 42 1 8.0338 6.3029 -1.1050 43 1 7.2538 6.8050 0.4260 44 1 2.2720 2.1232 -1.9978 45 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494971041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:17 Heat of formation + Delta-G solvation = -40.749808 kcal Electronic energy + Delta-G solvation = -22371.157441 eV Core-core repulsion = 19194.867760 eV Total energy + Delta-G solvation = -3176.289681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.69193 -37.89794 -36.55838 -33.85006 -33.14737 -32.29379 -29.74527 -28.93973 -28.14437 -27.22032 -24.54433 -23.49146 -22.42627 -20.75185 -20.31394 -19.96944 -18.16108 -17.16591 -16.24092 -15.80990 -15.67515 -15.22526 -14.60094 -14.27029 -14.00632 -13.53029 -13.36009 -13.21834 -13.06912 -12.81518 -12.52877 -12.44362 -12.23824 -12.05209 -11.82011 -11.42279 -11.22155 -11.13812 -10.96713 -10.95269 -10.87749 -10.71858 -10.69895 -10.42076 -10.18495 -10.00634 -9.53785 -9.32172 -8.95314 -8.77211 -8.39189 -7.03285 -5.81550 -3.10673 1.58356 3.38877 3.45354 3.46679 3.62378 3.68898 4.45587 4.54186 4.61283 4.90860 5.07111 5.19831 5.29128 5.37498 5.44096 5.45364 5.50635 5.58322 5.68073 5.72113 5.77672 5.81196 5.92408 5.94584 5.97628 5.99287 6.00755 6.04236 6.19688 6.23002 6.28259 6.44686 6.54963 6.57763 6.60045 6.63320 6.76459 6.97751 7.05984 7.25224 7.66227 8.07682 8.35713 8.69543 9.47664 10.03100 10.39273 11.40281 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.004143 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.026337 B = 6756.563468 C = 7850.972192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.550 3.450 8 O -0.557 6.557 9 C -0.176 4.176 10 C -0.115 4.115 11 C -0.050 4.050 12 C -0.087 4.087 13 C -0.129 4.129 14 C -0.123 4.123 15 C -0.098 4.098 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.397 3.699 8.596 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.360 5.360 7 C 0.338 3.662 8 O -0.438 6.438 9 C -0.179 4.179 10 C -0.172 4.172 11 C -0.052 4.052 12 C -0.124 4.124 13 C -0.167 4.167 14 C -0.161 4.161 15 C -0.135 4.135 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.731 3.113 8.727 15.746 hybrid contribution -1.191 0.706 -0.573 1.498 sum 11.540 3.819 8.154 14.638 Atomic orbital electron populations 1.21768 0.95742 0.99601 1.03239 1.22065 0.96934 0.98438 0.99998 1.20565 0.90038 0.92765 0.91371 0.92923 1.21644 0.95502 0.82839 1.00939 1.45923 1.07144 1.10657 1.72292 1.18260 0.82455 0.88583 0.76869 1.90717 1.56072 1.46218 1.50785 1.20858 0.94087 0.94414 1.08571 1.20749 0.98515 0.95893 1.01999 1.22609 0.93063 0.96519 0.93019 1.21212 0.91084 0.96590 1.03495 1.22474 0.97436 0.95380 1.01409 1.22505 0.96232 0.97076 1.00239 1.21531 0.96032 0.94574 1.01314 1.42457 1.16748 1.65859 1.11300 1.19211 0.91998 1.27555 0.98066 0.90922 1.24724 0.98019 1.01552 0.96407 1.69664 1.35224 1.48773 1.04048 0.86272 0.84179 0.79355 0.76872 1.21779 1.21887 1.20765 0.94904 0.94150 0.89659 0.92541 0.93878 0.92011 0.91943 0.75220 0.91365 0.91473 0.90591 0.89910 0.89920 0.91525 0.91512 0.91280 0.91292 0.89774 0.90586 0.78086 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 3 C 0.16 3.06 2.59 -67.93 -0.18 2.88 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.12 2.03 5.23 -4.04 -0.02 2.01 16 6 N -0.71 -12.41 5.33 -61.49 -0.33 -12.74 16 7 C 0.55 9.72 7.75 -12.67 -0.10 9.62 16 8 O -0.56 -11.00 14.11 5.27 0.07 -10.93 16 9 C -0.18 -2.63 6.00 -102.85 -0.62 -3.24 16 10 C -0.11 -1.50 9.16 36.01 0.33 -1.17 16 11 C -0.05 -0.67 6.12 -100.23 -0.61 -1.28 16 12 C -0.09 -1.13 4.81 -26.85 -0.13 -1.26 16 13 C -0.13 -1.26 6.88 -25.02 -0.17 -1.43 16 14 C -0.12 -1.08 6.94 -24.70 -0.17 -1.25 16 15 C -0.10 -0.98 5.66 -26.33 -0.15 -1.13 16 16 N -0.72 -16.52 4.51 -53.42 -0.24 -16.77 16 17 C -0.24 -6.01 7.75 -15.06 -0.12 -6.12 16 18 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 21 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.81 5.99 -51.93 -0.31 1.50 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.41 7.25 6.24 -40.82 -0.25 7.00 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.77 7.22 -51.93 -0.37 0.39 16 35 H 0.08 1.12 6.70 -51.93 -0.35 0.77 16 36 H 0.08 1.17 7.67 -51.93 -0.40 0.78 16 37 H 0.08 1.21 7.68 -51.93 -0.40 0.81 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 44 H 0.39 9.71 7.80 -40.82 -0.32 9.39 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -28.75 355.46 -9.09 -37.84 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.82 Total: 14.33 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.84 Total: -7.53 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.16 Total: -55.44 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.75 -9.09 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494971041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.908 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds