Wall clock time and date at job start Tue Mar 31 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21613 * 120.00509 * 359.97438 * 7 6 5 9 9 C 1.47098 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.50705 * 120.00179 * 359.97438 * 9 7 6 11 11 C 1.32994 * 120.00138 * 180.02562 * 9 7 6 12 12 C 1.51451 * 126.34177 * 359.67764 * 11 9 7 13 13 C 1.54273 * 106.85427 * 180.25024 * 12 11 9 14 14 C 1.54982 * 103.66142 * 23.48493 * 13 12 11 15 15 C 1.51850 * 126.34303 * 180.02562 * 11 9 7 16 16 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 3 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 3 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 3 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 30 30 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 31 31 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 32 32 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 33 33 H 1.08999 * 109.46860 * 90.00376 * 10 9 7 34 34 H 1.08998 * 109.47396 * 209.99932 * 10 9 7 35 35 H 1.08990 * 109.47223 * 330.00274 * 10 9 7 36 36 H 1.08999 * 109.98578 * 299.73685 * 12 11 9 37 37 H 1.09005 * 109.97681 * 61.03505 * 12 11 9 38 38 H 1.09000 * 110.79236 * 264.86134 * 13 12 11 39 39 H 1.08994 * 110.42776 * 141.93592 * 13 12 11 40 40 H 1.08997 * 110.83281 * 204.49191 * 14 13 12 41 41 H 1.08997 * 110.83366 * 80.90969 * 14 13 12 42 42 H 1.08995 * 110.43692 * 274.91548 * 15 11 9 43 43 H 1.08994 * 110.44123 * 37.31873 * 15 11 9 44 44 H 0.97000 * 119.99792 * 264.99726 * 16 3 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1657 2.1458 0.2576 9 6 5.8861 4.4409 -0.0350 10 6 4.9197 5.5775 -0.2485 11 6 7.1913 4.6838 0.0433 12 6 8.2838 3.6575 0.2599 13 6 9.6213 4.4260 0.2828 14 6 9.2094 5.8658 0.6816 15 6 7.8617 6.0423 -0.0607 16 7 1.6524 2.0975 -1.2518 17 6 0.4157 2.6734 -1.3688 18 1 -0.2740 2.6452 -0.5381 19 6 0.0506 3.2991 -2.5530 20 7 0.8912 3.3339 -3.5651 21 14 -1.6337 4.0915 -2.7099 22 1 -1.5562 5.5093 -2.2749 23 1 -2.0790 4.0317 -4.1253 24 1 -2.6049 3.3636 -1.8542 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 3.8500 1.0377 1.0960 31 1 3.9955 0.8311 -0.6660 32 1 3.4411 3.5483 -0.1315 33 1 4.6027 5.9711 0.7173 34 1 5.4077 6.3669 -0.8201 35 1 4.0497 5.2165 -0.7969 36 1 8.1302 3.1447 1.2094 37 1 8.2846 2.9363 -0.5574 38 1 10.0877 4.4201 -0.7024 39 1 10.2925 3.9993 1.0280 40 1 9.9436 6.5906 0.3299 41 1 9.0709 5.9448 1.7599 42 1 8.0338 6.3029 -1.1050 43 1 7.2538 6.8050 0.4260 44 1 2.2720 2.1232 -1.9978 45 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494971041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:16 Heat of formation + Delta-G solvation = -57.333374 kcal Electronic energy + Delta-G solvation = -22371.876559 eV Core-core repulsion = 19194.867760 eV Total energy + Delta-G solvation = -3177.008798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99568 -39.00077 -38.08480 -35.32164 -34.49579 -33.88518 -31.49827 -29.83422 -29.60476 -28.29189 -25.97011 -25.11235 -23.83101 -21.67705 -21.63379 -21.37077 -19.55976 -18.92498 -17.38537 -17.14402 -16.98021 -16.55963 -16.09917 -15.64741 -15.50963 -15.09659 -14.57097 -14.54443 -14.29161 -14.12773 -14.02617 -13.58320 -13.36613 -13.24842 -12.96971 -12.81135 -12.77044 -12.73134 -12.38549 -12.17465 -12.10381 -11.93005 -11.85379 -11.84956 -11.62598 -11.46438 -11.33313 -10.91909 -10.64541 -10.09294 -9.62031 -8.97363 -7.86563 -5.14080 0.42404 1.50809 1.52089 1.59181 2.28883 2.36918 2.60724 3.45987 3.50401 3.76531 3.88707 3.95478 3.98826 4.15703 4.19887 4.33277 4.37964 4.47369 4.51030 4.55783 4.69271 4.72783 4.79939 4.81905 4.87121 4.91352 4.97173 5.07148 5.08741 5.13113 5.14451 5.20156 5.20993 5.22341 5.41865 5.49436 5.53052 5.58314 5.61911 5.70458 5.72857 6.33106 6.66903 7.29712 7.40979 8.12091 8.37850 9.36381 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.004143 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.026337 B = 6756.563468 C = 7850.972192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.165 3.835 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.710 5.710 7 C 0.542 3.458 8 O -0.586 6.586 9 C -0.204 4.204 10 C -0.105 4.105 11 C -0.040 4.040 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.116 4.116 15 C -0.097 4.097 16 N -0.728 5.728 17 C -0.218 4.218 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.960 3.040 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.271 1.271 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.409 0.591 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.371 0.629 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.033 4.725 10.190 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.333 3.667 8 O -0.469 6.469 9 C -0.207 4.207 10 C -0.162 4.162 11 C -0.042 4.042 12 C -0.129 4.129 13 C -0.162 4.162 14 C -0.154 4.154 15 C -0.133 4.133 16 N -0.368 5.368 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.790 3.210 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.203 0.797 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.352 4.124 10.376 17.406 hybrid contribution -1.305 0.285 -0.982 1.658 sum 12.047 4.408 9.395 15.900 Atomic orbital electron populations 1.21692 0.95819 1.00622 1.01826 1.21984 0.96745 0.97274 1.00979 1.20702 0.90762 0.93348 0.89518 0.92415 1.21546 0.94497 0.82995 1.01135 1.45944 1.07324 1.10481 1.72316 1.18802 0.82125 0.89719 0.76094 1.90693 1.56542 1.47388 1.52266 1.20873 0.95235 0.93346 1.11240 1.20689 0.97277 0.95566 1.02684 1.23047 0.92560 0.98553 0.90076 1.21239 0.93355 0.96627 1.01630 1.22465 0.95546 0.95757 1.02400 1.22522 0.95839 0.96590 1.00424 1.21656 0.96613 0.92641 1.02436 1.42570 1.15828 1.66145 1.12259 1.19506 0.92476 1.25345 0.97643 0.90195 1.25370 1.00997 1.03365 0.96601 1.69816 1.36907 1.50780 1.04399 0.85339 0.81010 0.78587 0.76037 1.21589 1.23180 1.19650 0.92804 0.93172 0.93240 0.93680 0.90720 0.90484 0.93443 0.75333 0.89986 0.89695 0.92927 0.91547 0.92271 0.90715 0.90399 0.88867 0.90869 0.88607 0.89102 0.79670 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -4.33 5.61 30.59 0.17 -4.16 16 3 C 0.17 6.10 2.59 44.99 0.12 6.21 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 4.32 5.23 86.38 0.45 4.77 16 6 N -0.71 -25.28 5.33 -466.70 -2.49 -27.77 16 7 C 0.54 19.59 7.75 86.57 0.67 20.26 16 8 O -0.59 -23.82 14.11 -4.07 -0.06 -23.88 16 9 C -0.20 -6.05 6.00 -18.70 -0.11 -6.16 16 10 C -0.11 -2.67 9.16 71.24 0.65 -2.02 16 11 C -0.04 -1.03 6.12 -17.01 -0.10 -1.14 16 12 C -0.09 -2.37 4.81 30.52 0.15 -2.22 16 13 C -0.12 -2.17 6.88 31.70 0.22 -1.95 16 14 C -0.12 -1.65 6.94 31.91 0.22 -1.43 16 15 C -0.10 -1.67 5.66 30.86 0.17 -1.50 16 16 N -0.73 -33.63 4.51 -322.93 -1.46 -35.09 16 17 C -0.22 -11.03 7.75 84.04 0.65 -10.38 16 18 H 0.08 3.88 7.32 -2.91 -0.02 3.86 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.97 -56.94 13.06 21.65 0.28 -56.66 16 21 Si 0.96 44.36 29.55 68.60 2.03 46.39 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 2.05 5.99 -2.39 -0.01 2.04 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 14.76 6.24 -92.71 -0.58 14.18 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.80 7.22 -2.39 -0.02 1.79 16 35 H 0.05 1.57 6.70 -2.39 -0.02 1.55 16 36 H 0.07 1.92 7.67 -2.39 -0.02 1.90 16 37 H 0.06 1.80 7.68 -2.38 -0.02 1.78 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.35 7.68 -2.39 -0.02 1.34 16 44 H 0.37 19.24 7.80 -92.71 -0.72 18.52 16 45 H 0.25 14.34 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -62.97 355.46 2.37 -60.60 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.33 Total: 43.71 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.39 Total: -7.31 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -3.66 Total: -119.51 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.97 2.37 -60.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494971041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.269 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds